View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5427_high_2 (Length: 470)
Name: NF5427_high_2
Description: NF5427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5427_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 7 - 454
Target Start/End: Original strand, 27331104 - 27331550
Alignment:
| Q |
7 |
taaattatactaattaggtaagcaaaccatgtgaaaacacccgtccac--gaccctttatgtttattttaaccggttactttcactttgcatcttcttca |
104 |
Q |
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| T |
27331104 |
taaattatactaattaggtaagcaaaccatgtgaaaacacccgtccactggaccctttatgtttattttaaccggttactttcactttgcatcttcttca |
27331203 |
T |
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| Q |
105 |
ttttgtttgtctttatacataagtatctcctaataaattaattaagtgttaactttatccctttaaggccaacaactgaccaaccccaattgctataaat |
204 |
Q |
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| T |
27331204 |
ttttgtttgtctttatacataagtatctcctaataaattaattaagtgttaactttatccctttaaggccaacaactgaccaaccccaattgctataaat |
27331303 |
T |
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| Q |
205 |
tgcccttcaatatacagatctaaatttcactcaccccc--atatatctcgtgaataataaaatgacaaaaatatttattattgtttacctcttttgtgac |
302 |
Q |
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| T |
27331304 |
tgcccttcaatatacagatctaaatctcactcacgcccatatatatctcgtgaataataaaatgacaaaaatatttattattgtttacctcttttgtgac |
27331403 |
T |
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| Q |
303 |
taagcagaatagcatcaattgttttcatttatgaaactgaggtnnnnnnnnnnnnnnnnntcataattccttcttctccaatcatcttcatttgcattat |
402 |
Q |
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| T |
27331404 |
taagcagaatagcatcaattgttttcatttatgaaactgaggt-----aaaaaaaaaaattcataattccttcttctccaatcatcttcatttgcattat |
27331498 |
T |
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| Q |
403 |
tgctaaaattttgtttttgtttcataaattgatgtaccagtgaggaccattt |
454 |
Q |
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| T |
27331499 |
tgctaaaattttgtttttgtttcataaattgatgtaccagtgaggaccattt |
27331550 |
T |
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