View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5427_high_24 (Length: 243)
Name: NF5427_high_24
Description: NF5427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5427_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 6 - 187
Target Start/End: Original strand, 7129739 - 7129918
Alignment:
| Q |
6 |
tataacatggatcatgaatctttcaattcttccaaatcacgtatacattttcagcaacaaagaaaagtaggtacacgtgttattatcctaagatagccac |
105 |
Q |
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| T |
7129739 |
tataatatggatcatgaatctttcaattcttccaaatcacgtatacattttcactaacaaagaaaagtaggtacacatgttattatcctatgatagacac |
7129838 |
T |
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| Q |
106 |
atccatgatcctataaatagtaccaaccgtctcaacaaacaacacaaacacctgaaacttgaatattatctttctaaattaa |
187 |
Q |
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| T |
7129839 |
attcacgattctataaaa--tccaaaccgtcttagcaaacaacacaaacacctcaaacttgagtattatctttctaaattaa |
7129918 |
T |
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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 233
Target Start/End: Original strand, 7129917 - 7129951
Alignment:
| Q |
199 |
aacaaatatcatggaaattcaacttttgtcctttg |
233 |
Q |
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| T |
7129917 |
aacaaatatcatggaaattcaactttcgtcctttg |
7129951 |
T |
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