View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5427_high_25 (Length: 243)
Name: NF5427_high_25
Description: NF5427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5427_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 63 - 157
Target Start/End: Complemental strand, 1530934 - 1530840
Alignment:
| Q |
63 |
acgcgcaaggcattgaataattgattagtaaataaaattattgtgttgacttaattattaagtattcttatggtctaatataaatcaattaacaa |
157 |
Q |
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| T |
1530934 |
acgcgcaaggcattgaataattgattagtaaataaaattattgtgttgacttaattattaagtattcttatggtctaatataaatcaattaacaa |
1530840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 1530854 - 1530794
Alignment:
| Q |
183 |
taaatcaattaacaataagacgagttcaaacaaaattcttctaactataaatatcagaatt |
243 |
Q |
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| T |
1530854 |
taaatcaattaacaataagacgagttcaaacaaaattcttctaactataaatatgagaatt |
1530794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 1516626 - 1516574
Alignment:
| Q |
184 |
aaatcaattaacaataagacgagttcaaacaaaattcttctaactataaatat |
236 |
Q |
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| T |
1516626 |
aaatcaattaacaataagacgaattcaaacaacattcttctagctataaatat |
1516574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 157
Target Start/End: Complemental strand, 1516648 - 1516613
Alignment:
| Q |
122 |
aagtattcttatggtctaatataaatcaattaacaa |
157 |
Q |
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| T |
1516648 |
aagtattcttatggtctaatacaaatcaattaacaa |
1516613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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