View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5427_high_26 (Length: 241)
Name: NF5427_high_26
Description: NF5427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5427_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 1530814 - 1530582
Alignment:
| Q |
1 |
ctaactataaatatcagaattgtgtgtaatgtaaatctatacacccacatagagaaaaacaacaagcaaaattatggatgttttatcctccttaaactca |
100 |
Q |
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| T |
1530814 |
ctaactataaatatgagaattgtgtgtaatgtaaatcaatacacccacatagagaaaaacaacaagcaaaattatggatgttttattatccttaaactca |
1530715 |
T |
|
| Q |
101 |
ggcctaattagcatttccaaaccatatcaacatcatatccttccactctcaagtagacaacctcgtatgcagttttttgtttcatgcagagctaacaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
1530714 |
ggcctaattagcatttccaaaccatatcaacatcatatccttccactctcaagtagacaacctcgtatgcagttttctgtttcatgcagagctacaaaaa |
1530615 |
T |
|
| Q |
201 |
atgttccaattcaacctgagctgaatgatgatg |
233 |
Q |
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| T |
1530614 |
atgttccaattcataatgagttgaatgatgatg |
1530582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 67 - 233
Target Start/End: Complemental strand, 1516518 - 1516352
Alignment:
| Q |
67 |
caaaattatggatgttttatcctccttaaactcaggcctaattagcatttccaaaccatatcaacatcatatccttccactctcaagtagacaacctcgt |
166 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1516518 |
caaaattatggatgttttattatccttaaactcaggcctaattagcatttccaaaccatatcaacatcatatccttccactctcaagtagacaacctcgt |
1516419 |
T |
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| Q |
167 |
atgcagttttttgtttcatgcagagctaacaaaaatgttccaattcaacctgagctgaatgatgatg |
233 |
Q |
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| T |
1516418 |
atgcagttttctgtttcatgcagagctacaaaaaatgttccaattcataatgagttgaatgatgatg |
1516352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 1498778 - 1498699
Alignment:
| Q |
74 |
atggatgttttatcctccttaaactcaggcctaattagca-tttccaaaccatatcaacatcatatccttccactctcaa |
152 |
Q |
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||||||||||||| |||||||| ||| || | |||| || ||||||||||||||| ||||||||||||| |||| |||| |
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| T |
1498778 |
atggatgttttattatccttaaattcaagcttcattaccaatttccaaaccatatccacatcatatcctttcactttcaa |
1498699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 47 - 152
Target Start/End: Original strand, 16553164 - 16553268
Alignment:
| Q |
47 |
acatagagaaaaacaacaagcaaaattatggatgttttatcctccttaaactcaggcctaattagcatttccaaaccatatcaacatcatatccttccac |
146 |
Q |
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|||||||||||||| |||| |||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||| || ||||||| |||||| |
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| T |
16553164 |
acatagagaaaaactacaat-aaaattatatatgttttatcatccttaaactcaggcataattagcatttccaaaccatatccacgtcatatcattccac |
16553262 |
T |
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| Q |
147 |
tctcaa |
152 |
Q |
| |
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|||||| |
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|
| T |
16553263 |
tctcaa |
16553268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 209
Target Start/End: Original strand, 7978165 - 7978307
Alignment:
| Q |
77 |
gatgttttatcctccttaaactcaggcctaattagcatttccaaaccatatcaacatcatatccttccactctcaagt---------agacaacctcgta |
167 |
Q |
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|||||||||| ||||||| ||| |||| |||||||||||||||||||||||||||||||||||||| | |||| | ||||||||| ||| |
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| T |
7978165 |
gatgttttattatccttaacctcgagcctcgttagcatttccaaaccatatcaacatcatatccttccaatttcaaataagcaacaaagacaaccttgta |
7978264 |
T |
|
| Q |
168 |
tgcagttttttgtttcatgcagagcta-acaaaaatgttccaa |
209 |
Q |
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|||||| || ||||||||||||||| | | ||||||||||||| |
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|
| T |
7978265 |
tgcagtgttatgtttcatgcagagccataaaaaaatgttccaa |
7978307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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