View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5427_high_30 (Length: 232)
Name: NF5427_high_30
Description: NF5427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5427_high_30 |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 3e-87; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 20 - 212
Target Start/End: Original strand, 4819523 - 4819721
Alignment:
| Q |
20 |
cgtagacatgtttttcaacttgaatgctgaagaaaaagctcttgccgcgacattgctttacta--tcatcaagaccgggctcatagataggaagttgatt |
117 |
Q |
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| T |
4819523 |
cgtagacatgtttttcaacttgaatgctgaagaaaaagctcttgccgcgacattgctttactacatcatcaagaccggactcatagataggaacttgatt |
4819622 |
T |
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| Q |
118 |
gttgtgccacactgcaatacgcgatttcgagatatcaacgacagctacttcaatggatgg----attaatgcaatgactgccattgctggaccaccaat |
212 |
Q |
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| T |
4819623 |
gttgtgccacactgcaatacgcgatttcgagatatcaacgacagctacttcaatggatggacatattaatgcaatgactgccattgctggaccaccaat |
4819721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 22 - 178
Target Start/End: Original strand, 10779320 - 10779477
Alignment:
| Q |
22 |
tagacatgtttttcaacttgaatgctgaagaaaaagctcttgccgcgacattgctttacta--tcatcaagaccgggctcatagataggaagttgattgt |
119 |
Q |
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| T |
10779320 |
tagacatgtttttcaacatcagtgctgaagaaaagg-tcttgctgcgacattactttactacataatcaagattttgctcatagataggaagttgattgt |
10779418 |
T |
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| Q |
120 |
tgtgccacactgcaatacgcgatttcgagatatcaacgacagctacttcaatggatgga |
178 |
Q |
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| T |
10779419 |
tgttccacactgcaatgcgcgatttcgagatatcgaccactgctacgtcaatggatgga |
10779477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 178
Target Start/End: Original strand, 4829323 - 4829482
Alignment:
| Q |
20 |
cgtagacatgtttttcaacttgaatgctgaagaaaaagctcttgccgcgacattgctttacta--tcatcaagaccgggctcatagataggaagttgatt |
117 |
Q |
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| T |
4829323 |
cgtagacatattttttaacatcatagctgaagaaaa-gttcttgccacgaaattgctttgctacatcatcaagaccaggctcgtagatgggaagttgatg |
4829421 |
T |
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| Q |
118 |
gttgtgccacactgcaatacgcgatttcgagatatcaacgacagctacttcaatggatgga |
178 |
Q |
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| T |
4829422 |
gttgttccacagtgcaatgctcaattacaagatatcgacgactgctacttcagtggatgga |
4829482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 152
Target Start/End: Original strand, 4803928 - 4804060
Alignment:
| Q |
22 |
tagacatgtttttcaacttgaatgctgaagaaaaagctcttgccgcgacattgctttacta--tcatcaagaccgggctcatagataggaagttgattgt |
119 |
Q |
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| T |
4803928 |
tagacatgtttttcaacatcagtgttgaagacaaggtacttgcatcgacattgctttactacatcatcaatacctggctcatagataggaagttgattgc |
4804027 |
T |
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| Q |
120 |
tgtgccacactgcaatacgcgatttcgagatat |
152 |
Q |
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| T |
4804028 |
tattcaaggctgcaatgcacgatttcgagatat |
4804060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 4798043 - 4797949
Alignment:
| Q |
24 |
gacatgtttttcaacttgaatgctgaagaaaaagctcttgccgcgacattgctttact--atcatcaagaccgggctcatagataggaagttgat |
116 |
Q |
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| T |
4798043 |
gacatgttttttaacatcagtgctgaagaaaaggttcttgccgcgatattgctttactacatcatcaagacctggttcatagatggcaagttgat |
4797949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 159
Target Start/End: Original strand, 4824479 - 4824574
Alignment:
| Q |
66 |
gcgacattgctttactat--catcaagaccgggctcatagataggaagttgattgttgtgccacactgcaatacgcgatttcgagatatcaacgac |
159 |
Q |
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| T |
4824479 |
gcgacattgctttactaaaccatcaaaacctggctgatagataggaatttgatcgttgtaccatgctacaatgcgcgattttgtgatatcaacgac |
4824574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 4835691 - 4835791
Alignment:
| Q |
25 |
acatgtttttcaacttgaatgctgaagaaaaagctcttgccgcgacattgctttacta---------tcatcaagaccgggctcatagataggaagttga |
115 |
Q |
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| T |
4835691 |
acatgttttttgacatcaatgctgaagaaaaggttctttctgcgacattgctttactacatcatcattcatcaagatcgggctcatagataggaagttga |
4835790 |
T |
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| Q |
116 |
t |
116 |
Q |
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| T |
4835791 |
t |
4835791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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