View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5427_high_31 (Length: 228)
Name: NF5427_high_31
Description: NF5427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5427_high_31 |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 40467911 - 40467684
Alignment:
| Q |
1 |
aggtgaaaacagtaacaggtaaatgactgctttaattgaagggaaaggaaagttttgcttattgtaagttacctattcaatcgaaccagttctgagagaa |
100 |
Q |
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| T |
40467911 |
aggtgaaaacagtaacaggtaaatgactgctttaattgaagggaaaggaaagttttgcttattgtaagttacctattcaatcgaaccagttctgagagaa |
40467812 |
T |
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| Q |
101 |
actccacacagattcctctcacgctatcgtttccagcgtgaaataattcaagaacaggtgacaattcaattctatttgctattgagatcttgcaactttt |
200 |
Q |
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| T |
40467811 |
actccacacagattcctctcacgctatcgtttccagcgtgaaataattcaagaacaggtgacaattcaattctatttgctattgagctcttgcaactttt |
40467712 |
T |
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| Q |
201 |
ttcagcttgcatacaacacaaaagtatg |
228 |
Q |
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| T |
40467711 |
ttcagcttgcatacaacacaaaagtatg |
40467684 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 228
Target Start/End: Complemental strand, 144722 - 144624
Alignment:
| Q |
130 |
tttccagcgtgaaataattcaagaacaggtgacaattcaattctatttgctattgagatcttgcaacttttttcagcttgcatacaacacaaaagtatg |
228 |
Q |
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|||||||| ||||||||| |||||| ||||||||||||||||| ||||| | || | || ||||||| |||||||||||||||| |||||||||| |
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| T |
144722 |
tttccagcatgaaataatctgagaacatgtgacaattcaattctaattgctgtcaagctattttaacttttctcagcttgcatacaactcaaaagtatg |
144624 |
T |
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