View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5427_high_32 (Length: 227)
Name: NF5427_high_32
Description: NF5427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5427_high_32 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 40467148 - 40467374
Alignment:
| Q |
1 |
gtattggaaatagcaagattgtggaaggattctaagaccgatcctcagattcattcttatttatcaaagccaacagtcgtaagtggtttagtagaaattc |
100 |
Q |
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| T |
40467148 |
gtattggaaatagcaagattgtggaaggattctaagaccgatcctcagattcattcttatttatcaaagccaacagttgtaagtggtttagtagaaattc |
40467247 |
T |
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| Q |
101 |
tctcggcttctctaaatagagaagttctgagaagatcaatttatattctttcagagctaatcttttcagatgaaagagttggagaaacacttaacagtgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40467248 |
tctcggcttctctaaatagagaagttctgagaagatcaatttatattctttcagagctaatcttttcagatgaaagagttggagaaacacttaacagtgt |
40467347 |
T |
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| Q |
201 |
agattctgattttgattgcttggctat |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
40467348 |
agattctgattttgattgcttggctat |
40467374 |
T |
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