View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5427_high_5 (Length: 395)
Name: NF5427_high_5
Description: NF5427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5427_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 381
Target Start/End: Complemental strand, 3624324 - 3623961
Alignment:
| Q |
18 |
cttgttaactcttgtttatggaataatcaaaagctatggctaataatgccaaactatagcctttaagccagtatttagaattaaacactagaattcgaaa |
117 |
Q |
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| T |
3624324 |
cttgttaactcttgtttatggaataatcaaaagctatggctaataatgccaaactatagcctttaagccagtatttagaattaaacactagaattcgaaa |
3624225 |
T |
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| Q |
118 |
ttctagaacaaaatgaaaatgtcacatttgttgatatgattcatgttaacatgtcaatttcatagtctgttttctagtttgttgttttctgagcacannn |
217 |
Q |
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| T |
3624224 |
ttctagaacaaaatgaaaatgtcacatttgttgatatgattcatgttaacatgtcaatttcatagtctgttttctagtttgttgttttctgagcacattt |
3624125 |
T |
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| Q |
218 |
nnnnggaggagattgtgtgacccaataaaagctctcaaatgttaagccacaccatttatctttttgacgaggtatagctgacaaggcaggtgatccaaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3624124 |
ttttggaggagattgtgtgacccaataaaagctctcaaatgttaagccacaccatttatctttttgacgaggtatagctgacaaggcaggtgttccaaaa |
3624025 |
T |
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| Q |
318 |
gaaatatctagaagtagtggggtccattattatcgattgtggtcgatacaaatggttacgtctt |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
3624024 |
gaaatatctagaagtagtggggtccattattatcgattgtggtcgatacagatggttacatctt |
3623961 |
T |
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