View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5427_low_1 (Length: 559)
Name: NF5427_low_1
Description: NF5427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5427_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 139 - 541
Target Start/End: Original strand, 3331950 - 3332352
Alignment:
| Q |
139 |
ttgaagttgttgaatagaagaaccatcatcttcttccaaaggaagtctctcataagcagcgttactaaaagaagcagacataataacaacaggtccagaa |
238 |
Q |
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| T |
3331950 |
ttgaagttgttgaatagaagaaccatcatcatcttccaaaggaagtctctcataagcagcgttactaaaagaagcagacataataacaacaggtccagaa |
3332049 |
T |
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| Q |
239 |
gcaatcaaagcaccaacaacacttccaccaacaacctgcccttgtccgcccgctaaatatatggtcaaaccagaagcagcgggcggagcaggtggtggaa |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3332050 |
gcaatcaaagcaccaacaacacttccaccaacaacctgcccttgtccgcccgctaaatatatggtcaaaccagaagcagcgggcggagcaggtggtggaa |
3332149 |
T |
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| Q |
339 |
gaaacgatccagccagcgaaagaatctcgaaccttccatgaagtgtaacaacagccccaggagaagccggttgccttagtgtcacgtttgtaaccgtccc |
438 |
Q |
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| T |
3332150 |
gaaacgatccagccagcgaaagaatctcgaaccttccatgaagtgtaacaacagctccaggagaagccggttgccttagtgtcacgtttgtaaccgtccc |
3332249 |
T |
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| Q |
439 |
tgtcccactcatgatgcaaacgcctctttgacggcgtctagcaaagttgttgacactttcaacaacgtcacaaccgtctgcaacttccatcacgtgagtt |
538 |
Q |
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| T |
3332250 |
tgtcccactcatgatgcaaacgcctctttgacggcgtctagcgaagttgttgacactttcaacaacgtcacaaccgtctgcaacttccatcacgtgagtt |
3332349 |
T |
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| Q |
539 |
ttc |
541 |
Q |
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| T |
3332350 |
ttc |
3332352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 3331821 - 3331906
Alignment:
| Q |
19 |
aagattaggattagaattaggaggaggcatagcttgaaaaagtggagcagttgaatctcctaaaagctgttgttgttgttgctgaa |
104 |
Q |
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| T |
3331821 |
aagattaggattagaattaggaggatgcatagcttgaaaaagtggagcagttgaatctcctaaaagctgttgttgttgttgctgaa |
3331906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 297
Target Start/End: Complemental strand, 39960017 - 39959944
Alignment:
| Q |
224 |
acaacaggtccagaagcaatcaaagcaccaacaacacttccaccaacaacctgcccttgtccgcccgctaaata |
297 |
Q |
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| T |
39960017 |
acaacaggtcctgaagcaatcaaagcaccaactacagcacctccaacaacttgtccttgagcacccgctaaata |
39959944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 226 - 294
Target Start/End: Complemental strand, 16579014 - 16578946
Alignment:
| Q |
226 |
aacaggtccagaagcaatcaaagcaccaacaacacttccaccaacaacctgcccttgtccgcccgctaa |
294 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| || ||||| |
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| T |
16579014 |
aacaggtccagcagcaatcaaaggtccaacaacacttccaccaacaacttgcccttgtccaccggctaa |
16578946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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