View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5427_low_11 (Length: 318)
Name: NF5427_low_11
Description: NF5427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5427_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 40671490 - 40671793
Alignment:
| Q |
1 |
tccatcacctccaacaatgaaacgaaccttcaaacagatatataagttacgcctttgaaagtttacaattnnnnnnnnnnttacttaaatccattgctgt |
100 |
Q |
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| T |
40671490 |
tccatcacctccaacaatgaaacgaaccttcaaacagatatataagttatgcctttgaaagtttacaattaaaaaaaaaattacttaaatccattgctgt |
40671589 |
T |
|
| Q |
101 |
ggcattatttatttctattggtgcagttttagtacaggtcaacaccaaagacggaaggtcgtcttgaattagtctcttcttcgacatgacttaaatcaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40671590 |
ggcattatttatttctattggtgcagttttagtacaggtcaacaccaaagacggaaggtcgtcttgaattagtctcttcttcgacatgactaaaatcaac |
40671689 |
T |
|
| Q |
201 |
tttctatttccatcaaatatggaacacacttattaaagcatgttgcttgatgaaaatccttgcaaaacttttaagtatctaaatttataataaaaacaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40671690 |
tttctatttccatcaaatatggaacacacttattaaagcatgttgcttgatgaaaatccttgcaaaacttttaagtatctaaattt---ataaaaacaga |
40671786 |
T |
|
| Q |
301 |
tagtatt |
307 |
Q |
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||||||| |
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| T |
40671787 |
tagtatt |
40671793 |
T |
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