View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5427_low_14 (Length: 303)
Name: NF5427_low_14
Description: NF5427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5427_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 293
Target Start/End: Complemental strand, 35448940 - 35448663
Alignment:
| Q |
16 |
tgtcaaggcgacctgcccaattgtcaggaatgcatcagctatgccaatctataataatggtggatcatcatttcgtatggttgagatgtctgctcacgga |
115 |
Q |
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| T |
35448940 |
tgtcatggagacctgcccaattgtcaggaatgcatcagctatgccaatctatagtaatggtggatcatcatttcatatggttgagatgtctgctcacgga |
35448841 |
T |
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| Q |
116 |
gatattttaagcatgcatcatagtcagaactcaaacatggatttgcagcaaggagttaatgggcagatggccatagtacaacctgaatattcaagttttc |
215 |
Q |
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| T |
35448840 |
gatattttaagcatgcatcatagtcagaactcaaacatggatttgcagcaaggagttaatgggcagatggccatagtacaacctgaatattcaagttttc |
35448741 |
T |
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| Q |
216 |
ctcacatgtctggtgctgatagaaatgccgtggagaccggctcaaatgtccgcgatgcttcagctatgccaatctctg |
293 |
Q |
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| T |
35448740 |
ctcacatgtctggtgctgatagaaatgccgtggagaccggctcaaatgtccgcgatgcttcagctatgccaatctctg |
35448663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 27 - 290
Target Start/End: Complemental strand, 35449160 - 35448891
Alignment:
| Q |
27 |
cctgcccaattgtcaggaatgcatcagctatgccaatctataataatggt---ggatcatcatttcgtatggttgagatgtctgctcacggagatatttt |
123 |
Q |
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| T |
35449160 |
cctgcccaattgtcggcaatacatcagctacgccaatctttaataacggtactggatcaccatttcgtatggttgatatgtctgctcatggagatttttc |
35449061 |
T |
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| Q |
124 |
aagcatgcatcatagtcagaactcaaacatggatttgcagcaaggagttaatgggcagatggccatagtacaacctgaatattcaagttttcctca---c |
220 |
Q |
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| T |
35449060 |
aagcatgcattatagtcagaactcgaacatgggttttcaacaaggaattaatggggggatggccataacagaacctgaatatccaagttcttctcctagc |
35448961 |
T |
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| Q |
221 |
atgtctggtgctgatagaaatgccgtggagaccggctcaaatgtccgcgatgcttcagctatgccaatct |
290 |
Q |
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| T |
35448960 |
atgtttggtgttgatgaaaatgtcatggagacctgcccaattgtcaggaatgcatcagctatgccaatct |
35448891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 77 - 240
Target Start/End: Complemental strand, 35441087 - 35440921
Alignment:
| Q |
77 |
ggatcatcatttcgtatggttgagatgtctgctcacggagatattttaagcatgcatcatagtcagaactcaaacatggatttgcagcaaggagttaatg |
176 |
Q |
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| T |
35441087 |
ggatcatcatttggtatggttgatacgtctgctcatggagatattccaagcatgacttttactcagaactcaaacatgggtatgcaacaaggagttaatg |
35440988 |
T |
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| Q |
177 |
ggcagatggccatagtacaacctgaatattcaagttt---tcctcacatgtctggtgctgatagaaa |
240 |
Q |
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| T |
35440987 |
ggggaatgaccatatccaaacctgataattcaagtttttctcctcacatgtttggtgctgatggaaa |
35440921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 176
Target Start/End: Complemental strand, 35449347 - 35449239
Alignment:
| Q |
68 |
aataatggtggatcatcatttcgtatggttgagatgtctgctcacggagatattttaagcatgcatcatagtcagaactcaaacatggatttgcagcaag |
167 |
Q |
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||||||||||||||||| ||| |||||||||| |||||||||| |||||| || || ||||||| ||||||||||| | ||||||| || || |||| |
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| T |
35449347 |
aataatggtggatcatcgtttggtatggttgacgtgtctgctcaaggagattgttcaaccatgcattatagtcagaacacgaacatgggctttcaacaag |
35449248 |
T |
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| Q |
168 |
gagttaatg |
176 |
Q |
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|| |||||| |
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| T |
35449247 |
gaattaatg |
35449239 |
T |
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