View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5427_low_21 (Length: 252)
Name: NF5427_low_21
Description: NF5427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5427_low_21 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 8 - 252
Target Start/End: Complemental strand, 12842819 - 12842579
Alignment:
| Q |
8 |
catcacagaaaaattaagtcccaatattttctggtcaactaccaaaactaattttacactttagttgaattattagaatctactattggaattcatgagt |
107 |
Q |
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| T |
12842819 |
catcacagaaaaattaagtcccaatattttctggtcaactaccaaaactaattttacactttagttga-ttattagaatctactattggaattcatgagt |
12842721 |
T |
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| Q |
108 |
aattgacccatatatacattattatgtagaataatagtacttagttttagtttgactaagtcaaagttaattaaatacagtcttttattcaaatcgatta |
207 |
Q |
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| T |
12842720 |
aattgacccatatatacattat---gtagaataatagtacttagttttagtttgactaaggtaaagttaattaaatacagtcttttattcaaatctgttg |
12842624 |
T |
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| Q |
208 |
gttactttgaagattactgattgttattttgaatgggtttattac |
252 |
Q |
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| T |
12842623 |
gttactttgaagattactgattgttattttgaatgggtttattac |
12842579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 13124974 - 13124871
Alignment:
| Q |
19 |
aattaagtcccaatattttctggtcaactaccaaaactaattttacactttagttgaattattagaatctactattggaattcatgagtaattgacccat |
118 |
Q |
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| T |
13124974 |
aattaagtcccaatattttctggtcaactaccaaaactaattttacactttagttg-attattagaatctactattggaattcttgagtaattgacccat |
13124876 |
T |
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| Q |
119 |
atata |
123 |
Q |
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| T |
13124875 |
atata |
13124871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 12862660 - 12862804
Alignment:
| Q |
8 |
catcacagaaaaattaagtcccaatattttctggtcaactaccaaaactaattttacactttagttgaattattagaatctactattggaattcatgagt |
107 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
12862660 |
catcgcagaaatcttaagtcccaatattttctggtcaactaccaaaactaattttacactttagttg-attattagaatctactgttggaattcatgagt |
12862758 |
T |
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| Q |
108 |
aattgacccatatatacattattatgtagaataatagtacttagtttta |
156 |
Q |
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| T |
12862759 |
aattgacccatatctac---tttatgttgaataatattgcttagtttta |
12862804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 147 - 252
Target Start/End: Original strand, 12862826 - 12862927
Alignment:
| Q |
147 |
cttagttttagtttgactaagtcaaagttaattaaatacagtcttttattcaaatcgattagttactttgaagattactgattgttattttgaatgggtt |
246 |
Q |
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| T |
12862826 |
cttagttttagtttgattaaatcaaggttaa----atacagtcttttattcaattcggttagttactttgaagattactgatagttattttgaatgggtt |
12862921 |
T |
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| Q |
247 |
tattac |
252 |
Q |
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|||||| |
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| T |
12862922 |
tattac |
12862927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 250
Target Start/End: Complemental strand, 12841365 - 12841249
Alignment:
| Q |
140 |
aatagtacttagttttagtttgactaagtcaaagttaattaaat--acagtcttttattcaaatcgattagttactttgaagattactga----ttgtta |
233 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||| || ||||| ||||||||| ||| ||| ||| | |||||||| ||| | |||| |
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| T |
12841365 |
aataatacttagttttagtttgactaagtcaaacttaattagatgagcagtcatttattcaagtcggttaattaggtagaagattattgatagttagtta |
12841266 |
T |
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| Q |
234 |
ttttgaatgggtttatt |
250 |
Q |
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| T |
12841265 |
ttttgaatgggtttatt |
12841249 |
T |
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