View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5427_low_24 (Length: 247)
Name: NF5427_low_24
Description: NF5427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5427_low_24 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 50814437 - 50814192
Alignment:
| Q |
1 |
cgttcaatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaaggaggcagtgtggtttcgttaagatggcagagatttatgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50814437 |
cgttcaatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaagaaggcagtgtggtttcgttaagatggcagagatttatgct |
50814338 |
T |
|
| Q |
101 |
taggttttcaactcctgaagtaattgcagcataaaccaaattgttgaaatcgttcttgtctatgaagctatagcgaaaattaagctggaacgagaggatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
50814337 |
taggttttcaactcctgaagtaattgcagcataaaccaaattgttgaaatcgttcttgtctatgaagctatagcgacaattaagctggaacgagaggatg |
50814238 |
T |
|
| Q |
201 |
ggtagactcttatcccgcatgctcatgaaggagtagaataatttac |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
50814237 |
ggtagactcttatcccgcatgctcatgaaggagtagaagaatttac |
50814192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 50861427 - 50861672
Alignment:
| Q |
1 |
cgttcaatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaaggaggcagtgtggtttcgttaagatggcagagatttatgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50861427 |
cgttcaatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaagaaggcagtgtggtttcgttaagatggcagagatttatgct |
50861526 |
T |
|
| Q |
101 |
taggttttcaactcctgaagtaattgcagcataaaccaaattgttgaaatcgttcttgtctatgaagctatagcgaaaattaagctggaacgagaggatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
50861527 |
taggttttcaactcctgaagtaattgcagcataaaccaaattgttgaaatcgttcttgtctatgaagctatagcgacaattaagctggaacgagaggatg |
50861626 |
T |
|
| Q |
201 |
ggtagactcttatcccgcatgctcatgaaggagtagaataatttac |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
50861627 |
ggtagactcttatcccgcatgctcatgaaggagtagaagaatttac |
50861672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 39558837 - 39558593
Alignment:
| Q |
1 |
cgttcaatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaaggaggcagtgtggtttc---gttaagatggcagagatttat |
97 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||| ||||||||| |||| ||||||| || | || |||| | ||||||||| || |
|
|
| T |
39558837 |
cgttcaatgttacactcttcaatttgaggactgtcaaggttttggtagttagaaccaaagcaggcagtatgatatcggagttatacttgcagagattgat |
39558738 |
T |
|
| Q |
98 |
gcttaggttttcaactcctgaagtaattgcagcataaaccaaattgttgaaatcgttcttgtctatgaagctatagcgaaaattaagctggaacgagagg |
197 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||||| || |||| | || | |||| | || | ||||||| ||||| |||||| |
|
|
| T |
39558737 |
gcttaggttttcaactcctcctataattgcagcatataccaaattgtaaaagtcgtagtcgtagaagaagtagtggctacaattaaggtggaa-gagagg |
39558639 |
T |
|
| Q |
198 |
atgggtagactcttatcccgcatgctcatgaaggagtagaataatt |
243 |
Q |
| |
|
||||||| | ||||||| ||||||||||| ||||||||||| |||| |
|
|
| T |
39558638 |
atgggtaaattcttatctcgcatgctcattaaggagtagaagaatt |
39558593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 39559096 - 39558983
Alignment:
| Q |
3 |
ttcaatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaaggaggcagtgtggtttcgttaagatggcagagatttatgctta |
102 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||||||| |||| ||||| |||||||| | ||||||||||| ||||||| |
|
|
| T |
39559096 |
ttcaatgttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaaagaaggcaatgtggttttggatttatggcagagatcgatgctta |
39558997 |
T |
|
| Q |
103 |
ggttttcaactcct |
116 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
39558996 |
ggttttcaactcct |
39558983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 50814709 - 50814634
Alignment:
| Q |
2 |
gttcaatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaaggaggcagtgtggtttcg |
77 |
Q |
| |
|
||||||||||| ||||||||||||||| |||| ||||||| ||||||| ||||||| ||||||| |||||||| |
|
|
| T |
50814709 |
gttcaatgttatcctcttcaatttgagttgggtcagggttttggtagttaggatgaaagaaggcagtatggtttcg |
50814634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 50861155 - 50861230
Alignment:
| Q |
2 |
gttcaatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaaggaggcagtgtggtttcg |
77 |
Q |
| |
|
||||||||||| ||||||||||||||| |||| ||||||| ||||||| ||||||| ||||||| |||||||| |
|
|
| T |
50861155 |
gttcaatgttatcctcttcaatttgagttgggtcagggttttggtagttaggatgaaagaaggcagtatggtttcg |
50861230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 31211027 - 31210981
Alignment:
| Q |
8 |
tgttaccctcttcaatttgagggatgtcaaggttttgctagttagaa |
54 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||| || |||||| |
|
|
| T |
31211027 |
tgttacgctcttcaatttgaggaatgtcaaggttttggtatttagaa |
31210981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 19370982 - 19371034
Alignment:
| Q |
8 |
tgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaag |
60 |
Q |
| |
|
||||| |||||||||||||||| ||| |||||||||| |||||||| ||||| |
|
|
| T |
19370982 |
tgttatcctcttcaatttgaggaatgccaaggttttggaagttagaaggaaag |
19371034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University