View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5427_low_35 (Length: 227)
Name: NF5427_low_35
Description: NF5427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5427_low_35 |
 | |
|
| [»] chr7 (7 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 47257235 - 47257026
Alignment:
| Q |
18 |
cccccaagaaaagatccaattccaccttttgctgctccaccatacacagcttcaccccatccaaaattcacttctgagaacttagcacgagtccaatctg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47257235 |
cccccaagaaaagatccaattccaccttttgctgctccaccatacacagcttcaccccatccgaaattcacttctgagaacttagcacgagtccaatctg |
47257136 |
T |
|
| Q |
118 |
acaccatacatgttcttccctttgtaaataaacatcgttccttaataaccataaaatctgccaatgagtgcatgtactcctctgtaacttgagcttttgc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
47257135 |
acaccatacatgttcttccctttgtaaataaacatcgttccttaataaccataaaatctgccaatgagtgcatgtacttctctgtaacttgagcttttgc |
47257036 |
T |
|
| Q |
218 |
ttttcttatc |
227 |
Q |
| |
|
|||||||||| |
|
|
| T |
47257035 |
ttttcttatc |
47257026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 21 - 227
Target Start/End: Complemental strand, 47243105 - 47242899
Alignment:
| Q |
21 |
ccaagaaaagatccaattccaccttttgctgctccaccatacacagcttcaccccatccaaaattcacttctgagaacttagcacgagtccaatctgaca |
120 |
Q |
| |
|
|||||| |||||||||||||||||||| || |||||||||| | | |||||||||||| ||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
47243105 |
ccaagataagatccaattccaccttttactactccaccatatattgtttcaccccatccgaaattcacttctgagaaattagcacgagtccaatccgaca |
47243006 |
T |
|
| Q |
121 |
ccatacatgttcttccctttgtaaataaacatcgttccttaataaccataaaatctgccaatgagtgcatgtactcctctgtaacttgagcttttgcttt |
220 |
Q |
| |
|
| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||| || || |||||||| |||||||||||||||| ||||||||| |
|
|
| T |
47243005 |
ctatacaagttcttccagttgtaaataaacatcgttccttaataaccataaaatctgctaaagaatgcatgtattcctctgtaacttgagtttttgcttt |
47242906 |
T |
|
| Q |
221 |
tcttatc |
227 |
Q |
| |
|
||||||| |
|
|
| T |
47242905 |
tcttatc |
47242899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 39 - 227
Target Start/End: Complemental strand, 47283956 - 47283768
Alignment:
| Q |
39 |
ccaccttttgctgctccaccatacacagcttcaccccatccaaaattcacttctgagaacttagcacgagtccaatctgacaccatacatgttcttccct |
138 |
Q |
| |
|
||||||||| | ||||||||||||| || ||||||||||| ||||||||||||| | |||||||||||||| | ||||| || | ||| | |||| | |
|
|
| T |
47283956 |
ccaccttttaccactccaccatacaccgcctcaccccatccgaaattcacttctgcgtacttagcacgagtcaagtctgatacaacacacgatcttactg |
47283857 |
T |
|
| Q |
139 |
ttgtaaataaacatcgttccttaataaccataaaatctgccaatgagtgcatgtactcctctgtaacttgagcttttgcttttcttatc |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| || |||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
47283856 |
ttgtaaataaacatcgttccttaataaccataagatctgccaaagaatgcatgtattcttctgtaacttgagcttttgcttttcttatc |
47283768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 54 - 227
Target Start/End: Complemental strand, 47279348 - 47279175
Alignment:
| Q |
54 |
ccaccatacacagcttcaccccatccaaaattcacttctgagaacttagcacgagtccaatctgacaccatacatgttcttccctttgtaaataaacatc |
153 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||| | |||||||||||||| | ||||| || | ||| | |||| ||||||||||||||| |
|
|
| T |
47279348 |
ccaccatacaccgcctcaccccatccaaaattcacttctgcgtacttagcacgagtcaagtctgatacaacacaagatcttattgttgtaaataaacatc |
47279249 |
T |
|
| Q |
154 |
gttccttaataaccataaaatctgccaatgagtgcatgtactcctctgtaacttgagcttttgcttttcttatc |
227 |
Q |
| |
|
|||||||||||||||||| ||||||||| || |||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
47279248 |
gttccttaataaccataagatctgccaaagaatgcatgtattcttctgtaacttgagcttttgcttttcttatc |
47279175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 39 - 225
Target Start/End: Original strand, 47298864 - 47299050
Alignment:
| Q |
39 |
ccaccttttgctgctccaccatacacagcttcaccccatccaaaattcacttctgagaacttagcacgagtccaatctgacaccatacatgttcttccct |
138 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||| | ||||||||||| ||||||| | ||||| | ||| | |
|
|
| T |
47298864 |
ccaccttttgcaactccaccatacaccccttcaccccatccgaaattcacttctgagagcctagcacgagtcaaatctgaaataatacaagaccttacag |
47298963 |
T |
|
| Q |
139 |
ttgtaaataaacatcgttccttaataaccataaaatctgccaatgagtgcatgtactcctctgtaacttgagcttttgcttttctta |
225 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||| |||| || |||||||| ||||||||||||| ||||||| |||||||| |
|
|
| T |
47298964 |
ttgtaaataaacaccgttccttaataaccataagatcggccacagaatgcatgtattcctctgtaacttcagcttttaattttctta |
47299050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 39 - 225
Target Start/End: Original strand, 47292257 - 47292443
Alignment:
| Q |
39 |
ccaccttttgctgctccaccatacacagcttcaccccatccaaaattcacttctgagaacttagcacgagtccaatctgacaccatacatgttcttccct |
138 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||| | ||||||||||| ||||||| | | ||| | ||| | |
|
|
| T |
47292257 |
ccaccttttgcaactccaccatacaccccttcaccccaaccaaaattcacttctgagagcctagcacgagtcaaatctgagataacacaagaccttacag |
47292356 |
T |
|
| Q |
139 |
ttgtaaataaacatcgttccttaataaccataaaatctgccaatgagtgcatgtactcctctgtaacttgagcttttgcttttctta |
225 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||| |||| || |||||||| ||||| ||||||| ||||||| |||||||| |
|
|
| T |
47292357 |
ttgtaaataaacaccgttccttaataaccataagatcggccacagaatgcatgtattcctcagtaacttcagcttttaattttctta |
47292443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 225
Target Start/End: Complemental strand, 47267991 - 47267805
Alignment:
| Q |
39 |
ccaccttttgctgctccaccatacacagcttcaccccatccaaaattcacttctgagaacttagcacgagtccaatctgacaccatacatgttcttccct |
138 |
Q |
| |
|
|||| |||||| |||||||||||||| || |||||||||||||||| ||||||| ||||| |||||| |||||| || | ||| | ||| |
|
|
| T |
47267991 |
ccactttttgcagctccaccatacacggcctcaccccatccaaaatccacttctcttaactttatacgagttacatctgaaacaacacaagaccttatag |
47267892 |
T |
|
| Q |
139 |
ttgtaaataaacatcgttccttaataaccataaaatctgccaatgagtgcatgtactcctctgtaacttgagcttttgcttttctta |
225 |
Q |
| |
|
||||||||||||| || || ||||||||||||| |||||| | || ||||| || ||||||||||||| ||||||| |||||||| |
|
|
| T |
47267891 |
ttgtaaataaacaccgctctttaataaccataagatctgctacagaatgcatatattcctctgtaacttcagcttttaattttctta |
47267805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 21 - 227
Target Start/End: Complemental strand, 32731772 - 32731566
Alignment:
| Q |
21 |
ccaagaaaagatccaattccaccttttgctgctccaccatacacagcttcaccccatccaaaattcacttctgagaacttagcacgagtccaatctgaca |
120 |
Q |
| |
|
|||||| |||||||||||||||||||| || |||||||||||| | |||||||||||| |||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
32731772 |
ccaagataagatccaattccaccttttactactccaccatacattgtttcaccccatccgaaattcacttctgataaattagcacgagtccaatctgaca |
32731673 |
T |
|
| Q |
121 |
ccatacatgttcttccctttgtaaataaacatcgttccttaataaccataaaatctgccaatgagtgcatgtactcctctgtaacttgagcttttgcttt |
220 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||| || || |||||||| |||||||||||||||| ||||||||| |
|
|
| T |
32731672 |
ccatacaagttcttccggttgtaaataaacatcgttccttaataaccatacaatctgctaaagaatgcatgtattcctctgtaacttgagtttttgcttt |
32731573 |
T |
|
| Q |
221 |
tcttatc |
227 |
Q |
| |
|
||||||| |
|
|
| T |
32731572 |
tcttatc |
32731566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 20519759 - 20519682
Alignment:
| Q |
43 |
cttttgctgctccaccatacacagcttcaccccatccaaaattcacttctgagaacttagcacgagtccaatctgaca |
120 |
Q |
| |
|
||||||| ||||||||||| || |||||||||||||||||||||||| |||||||||||| ||| ||||||||| |
|
|
| T |
20519759 |
cttttgcaactccaccatacttcgcctcaccccatccaaaattcacttctctgaacttagcacgtgtcaaatctgaca |
20519682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University