View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5427_low_5 (Length: 422)
Name: NF5427_low_5
Description: NF5427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5427_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 386; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 19 - 412
Target Start/End: Complemental strand, 11201507 - 11201114
Alignment:
| Q |
19 |
ctgatagcgtcgaatcactagatgatattgttttgattggtgaagatgcatctgttacaaaagagcctaagctggtgcatgttaaggttgaagcctatga |
118 |
Q |
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| T |
11201507 |
ctgatagcgtcgaatcactagatgatattgttttgattggtgaagatgcatctgttacaaaagagcctaagctggtgcatgttaaggttgaagcctatga |
11201408 |
T |
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| Q |
119 |
gtgaagtctcttgaaagattatggagtttcggttgtgttgctgatgtccaagtccgttgtccttttgtttccgttaatgactgtttcggttatggttttg |
218 |
Q |
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| T |
11201407 |
gtgaagtctcttgaaagattatggagtttcggttgtgttgctgatgtccaagtcagttgtccttttgtttccgttaatgactgtttcggttatggttttg |
11201308 |
T |
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| Q |
219 |
tgttttgaaagatctgctatacttttgatttatttctactgcgcataatgtatatgaaggctcatttatatgttgcttccaactgtgcaaataaagtaga |
318 |
Q |
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| T |
11201307 |
tgttttgaaagatctgctatacttttgatttatttctactgcgcataatgtatatgaaggctcatttatatgttgcttccaactgtgcaaataaagtaga |
11201208 |
T |
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| Q |
319 |
agacttaaggattatctgcacaatcaaagtgcttagacattttagatcctgatgtagtaaacctcaaatatgttttgttcattgcatgtctgtg |
412 |
Q |
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| T |
11201207 |
agacttaaggattatctgcacaatcaaagtgcttagacattttagatcctgatgtagtaaacctcaaatatgttttgtccattgcatgtctgtg |
11201114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 318
Target Start/End: Complemental strand, 11162732 - 11162433
Alignment:
| Q |
19 |
ctgatagcgtcgaatcactagatgatattgttttgattggtgaagatgcatctgttacaaaagagcctaagctggtgcatgttaaggttgaagcctatga |
118 |
Q |
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| T |
11162732 |
ctgatagcgtcgaatcactagatgatattgttttgattggtgaagatgcatctgttacaaaagagcctaagctggtgcatgttaaggttgaagcctatga |
11162633 |
T |
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| Q |
119 |
gtgaagtctcttgaaagattatggagtttcggttgtgttgctgatgtccaagtccgttgtccttttgtttccgttaatgactgtttcggttatggttttg |
218 |
Q |
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| T |
11162632 |
gtgaagtctcttgaaagattatggagtttcggttgtgttgctgatgtccaagtcagttgtccttttgtttccgttaatgactgtttcggttatggttttg |
11162533 |
T |
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| Q |
219 |
tgttttgaaagatctgctatacttttgatttatttctactgcgcataatgtatatgaaggctcatttatatgttgcttccaactgtgcaaataaagtaga |
318 |
Q |
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| T |
11162532 |
tgttttgaaagatctgctatacttttgatttatttctactgcgcataatgtatatgaaggctcatttatatgttgcttccaactgtgcaaataaagtaga |
11162433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 361 - 412
Target Start/End: Complemental strand, 11162436 - 11162385
Alignment:
| Q |
361 |
tagatcctgatgtagtaaacctcaaatatgttttgttcattgcatgtctgtg |
412 |
Q |
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| T |
11162436 |
tagatcctgatgtagtaaacctcaaatatgttttgtccattgcatgtctgtg |
11162385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 11162888 - 11162813
Alignment:
| Q |
19 |
ctgatagcgtcgaatcactagatgatattgttttgattggtgaagatgcatctgttacaaaagagcctaagctggt |
94 |
Q |
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| T |
11162888 |
ctgatagcgtggaatcacttgatgattttgttgtgcttagttctgatgcatctgctacaaaagagccaaagctggt |
11162813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 322 - 412
Target Start/End: Original strand, 248995 - 249085
Alignment:
| Q |
322 |
cttaaggattatctgcacaatcaaagtgcttagacattttagatcctgatgtagtaaacctcaaatatgttttgttcattgcatgtctgtg |
412 |
Q |
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| T |
248995 |
cttaaggattatctgcacaatcaaagtgcttagacattttagatcctgaggtagtaaacctcaaatatgttttgtccattgcatgtctgtg |
249085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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