View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5427_low_7 (Length: 371)
Name: NF5427_low_7
Description: NF5427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5427_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 12185581 - 12185224
Alignment:
| Q |
1 |
aagacttaaggtatgttagggaaaattgcttgttattaaaaatagatggtggattaattgcttctcactttttcaaatttttcaataacacattaataat |
100 |
Q |
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| T |
12185581 |
aagacttaaggtatcttagggaaaattgcttgttattaaaaatagatagtggattaattacttcgcactttttcaaatttttcaataacacattaataat |
12185482 |
T |
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| Q |
101 |
tgaaatcactaacttgaaattatgtttgaaaatttgaacagggatgtacttgaaaaactcttgcatattggatttcacggagacctcatgttataaagtt |
200 |
Q |
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| T |
12185481 |
tgaaatcactaacttgaaattatgtttgaaaatttgaacaggggtgtacttgaagaactcttgcatattggatttggcggagacctcatgttataaaatt |
12185382 |
T |
|
| Q |
201 |
ctgttgcagcttatgtaaagagatggagtcaataattgaaccgattgaactagttgaatcatgacttagatgtctcatcgattcaatttctggtcaattt |
300 |
Q |
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| T |
12185381 |
ctgttgcagcttatgtaaagacatgcaggcaataattgaaccgattgaactagttgaatcatgacttagatgtctcatcgattcaatttctagtcggttt |
12185282 |
T |
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| Q |
301 |
ttctttttctaatatt-taagcaattgttaggcttatgtcatctctataagttggttt |
357 |
Q |
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| T |
12185281 |
ttctttttctaatgttataagcaattgttaggcttatgtcatctctataagttggttt |
12185224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 12430009 - 12429652
Alignment:
| Q |
1 |
aagacttaaggtatgttagggaaaattgcttgttattaaaaatagatggtggattaattgcttctcactttttcaaatttttcaataacacattaataat |
100 |
Q |
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| T |
12430009 |
aagacttaaggtatcttagggaaaattgcttgttattaaaaatagatagtggattaattacttcgcactttttcaaatttttcaataacacattaataat |
12429910 |
T |
|
| Q |
101 |
tgaaatcactaacttgaaattatgtttgaaaatttgaacagggatgtacttgaaaaactcttgcatattggatttcacggagacctcatgttataaagtt |
200 |
Q |
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| T |
12429909 |
tgaaatcactaacttgaaattatgtttgaaaatttgaacaggggtgtacttgaagaactcttgcatattggatttggcggagacctcatgttataaaatt |
12429810 |
T |
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| Q |
201 |
ctgttgcagcttatgtaaagagatggagtcaataattgaaccgattgaactagttgaatcatgacttagatgtctcatcgattcaatttctggtcaattt |
300 |
Q |
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||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
12429809 |
ctgttgcagcttatgtaaagacatgcaggcaataattgaaccgattgaactagttgaatcatgacttagatgtctcatcgattcaatttctagtcggttt |
12429710 |
T |
|
| Q |
301 |
ttctttttctaatatt-taagcaattgttaggcttatgtcatctctataagttggttt |
357 |
Q |
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| T |
12429709 |
ttctttttctaatgttataagcaattgttaggcttatgtcatctctataagttggttt |
12429652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 101 - 241
Target Start/End: Complemental strand, 12174017 - 12173877
Alignment:
| Q |
101 |
tgaaatcactaacttgaaattatgtttgaaaatttgaacagggatgtacttgaaaaactcttgcatattggatttcacggagacctcatgttataaagtt |
200 |
Q |
| |
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|||||||||||| || |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||| || |
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| T |
12174017 |
tgaaatcactaagttaaaattatgtttgaaaatttgaacaggagtgtacttgaagaactcttgcatattggatttggcggagacctcatgttataaaatt |
12173918 |
T |
|
| Q |
201 |
ctgttgcagcttatgtaaagagatggagtcaataattgaac |
241 |
Q |
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| T |
12173917 |
ctgttgcagcttatgtaaagacatgcagtcaataattgaac |
12173877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 101 - 241
Target Start/End: Complemental strand, 12418445 - 12418305
Alignment:
| Q |
101 |
tgaaatcactaacttgaaattatgtttgaaaatttgaacagggatgtacttgaaaaactcttgcatattggatttcacggagacctcatgttataaagtt |
200 |
Q |
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|||||||||||| || |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||| || |
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| T |
12418445 |
tgaaatcactaagttaaaattatgtttgaaaatttgaacaggagtgtacttgaagaactcttgcatattggatttggcggagacctcatgttataaaatt |
12418346 |
T |
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| Q |
201 |
ctgttgcagcttatgtaaagagatggagtcaataattgaac |
241 |
Q |
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||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
12418345 |
ctgttgcagcttatgtaaagacatgcagtcaataattgaac |
12418305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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