View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5428-Insertion-2 (Length: 469)
Name: NF5428-Insertion-2
Description: NF5428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5428-Insertion-2 |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 7 - 469
Target Start/End: Original strand, 45496218 - 45496680
Alignment:
| Q |
7 |
aataatagctctcagcaggaacctccagcacataattcctcccttccccatgcacctattcctcctaagaaatatcttcctcaccccatgatcacaagaa |
106 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45496218 |
aataatagctctcaacaggaacctccagcacataattcctcccttccccatgaacctattcctcctaagaaatatcttcctcaccccatgatcacaagaa |
45496317 |
T |
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| Q |
107 |
ccaaaactggaaaattaaaaccaaaagtgtttctcactgagcttgcccccaagactgtgaaaactgctctatttgatcccaggtggctacaagctatgaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
45496318 |
ccaaaactggaaaattaaaaccaaaagtgtttctcactgaacttgcccccaagactgtgaaaactgctctatctgatcccaggtggctacaagctatgaa |
45496417 |
T |
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| Q |
207 |
aactgagtacaaagctttgattgataacaaaacatgggatcttgttcctcttcctccacacaagaaagctattggctgcaagtgggtttatagagttaaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45496418 |
aactgagtacaaagctttgattgataacaaaacatgggatcttgttcctcttcctccacacaagaaagctattggctgcaagtgggtttatagagttaaa |
45496517 |
T |
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| Q |
307 |
gaaaacccagatggatctgttaacaaatttaaagccagattagtggctaagggtttcagtcaaacacttggatgtgattacactgaaactttctcttctg |
406 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45496518 |
gaaaatccagatggatctgttaacaaatttaaagccagattagtggctaagggtttcagtcaaacacttggatgtgattacactgaaactttctctcctg |
45496617 |
T |
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| Q |
407 |
taataaaacctgtcactatcaagctcattctcaccattgctatcactcataaatgggaaattc |
469 |
Q |
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| T |
45496618 |
taataaaacctgtcactatcaggctcattctcaccattgctatcacttataaatgggaaattc |
45496680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 7 - 469
Target Start/End: Original strand, 1676991 - 1677453
Alignment:
| Q |
7 |
aataatagctctcagcaggaacctccagcacataattcctcccttccccatgcacctattcctcctaagaaatatcttcctcaccccatgatcacaagaa |
106 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1676991 |
aataatagctctcagcaggaacctccagcacacaattcctcccttccccatgcacatattcctcctaagaaatatcttcctcaccccatgatcacaagaa |
1677090 |
T |
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| Q |
107 |
ccaaaactggaaaattaaaaccaaaagtgtttctcactgagcttgcccccaagactgtgaaaactgctctatttgatcccaggtggctacaagctatgaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||| |
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| T |
1677091 |
ccaaaactggaaaattaaaaccaaaagtgtttctcactgaacttgcccccaagactgtgaaaactactctatctgatcccaggtggctgcaagctatgaa |
1677190 |
T |
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| Q |
207 |
aactgagtacaaagctttgattgataacaaaacatgggatcttgttcctcttcctccacacaagaaagctattggctgcaagtgggtttatagagttaaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1677191 |
aactgagtacaaagctttgattgataacaaaacatgggatcttgttcctcttcctccacacaagaaagctattggctgcaagtgggtttatagagttaaa |
1677290 |
T |
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| Q |
307 |
gaaaacccagatggatctgttaacaaatttaaagccagattagtggctaagggtttcagtcaaacacttggatgtgattacactgaaactttctcttctg |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1677291 |
gaaaacccagatggatctgttaacaaatttaaagccagattagtggctaagggtttcagtcaaacacttggatgtgattacactgaaactttctctcctg |
1677390 |
T |
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| Q |
407 |
taataaaacctgtcactatcaagctcattctcaccattgctatcactcataaatgggaaattc |
469 |
Q |
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| T |
1677391 |
taataaaacctgtcactatcaggctcattctcaccattgctatcacttataaatgggaaattc |
1677453 |
T |
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