View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5428-Insertion-4 (Length: 321)

Name: NF5428-Insertion-4
Description: NF5428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5428-Insertion-4
NF5428-Insertion-4
[»] chr1 (1 HSPs)
chr1 (8-321)||(46512282-46512596)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 321
Target Start/End: Complemental strand, 46512596 - 46512282
Alignment:
Q  8 ataattcggttgtttgaaacatannnnnnnatttatttgtttataattaggttgggaaattgctcattgttttatagctttatgtgaagtgggagacaat 107  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46512596 ataattcggttgtttgaaacatatttttttatttatttgtttataattaggttgggaaattgctcattgttttatagctttatgtgaagtgggagacaat 46512497  T
Q  108 ttttggcatatgatgaatgtgtgttgatagggtcagtttgaggnnnnnnnnn--gttactggggatgtatgtattctgtggcttcttttttcctgtcatt 205  Q
    |||||||||||||||||||||||||||||||||||||||||||           ||||||||| ||||||||||||||||||||||||||| ||||||||    
T  46512496 ttttggcatatgatgaatgtgtgttgatagggtcagtttgaggtttttttttttgttactggg-atgtatgtattctgtggcttcttttttgctgtcatt 46512398  T
Q  206 gtcaaatgtctagatatctgtaactttaatattatctctattctgggtttgcacnnnnnnnactttctcatatttaattgttgttttcagttttcacttc 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  46512397 gtcaaatgtctagatatctgtaactttaatattatctctattctgggtttgcactttttttactttctcatatttaattgttgttttcagttttcacttc 46512298  T
Q  306 atgccgggttttagtg 321  Q
    ||||||||||||||||    
T  46512297 atgccgggttttagtg 46512282  T

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