View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5428_low_3 (Length: 229)

Name: NF5428_low_3
Description: NF5428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5428_low_3
NF5428_low_3
[»] chr3 (17 HSPs)
chr3 (102-229)||(30489533-30489660)
chr3 (102-220)||(30520352-30520470)
chr3 (1-62)||(30489432-30489493)
chr3 (105-225)||(30505370-30505497)
chr3 (146-220)||(30516177-30516247)
chr3 (20-62)||(30520270-30520312)
chr3 (105-205)||(30522226-30522328)
chr3 (20-62)||(30516051-30516093)
chr3 (147-221)||(30525282-30525356)
chr3 (105-191)||(30487388-30487476)
chr3 (105-203)||(30503504-30503604)
chr3 (20-62)||(30505285-30505327)
chr3 (152-221)||(30487747-30487815)
chr3 (161-221)||(30491711-30491771)
chr3 (118-186)||(30449815-30449885)
chr3 (152-203)||(30483464-30483515)
chr3 (27-60)||(8411988-8412021)
[»] chr5 (2 HSPs)
chr5 (113-197)||(38510667-38510755)
chr5 (154-197)||(38511496-38511539)
[»] chr4 (1 HSPs)
chr4 (104-173)||(38995191-38995262)
[»] chr2 (1 HSPs)
chr2 (152-195)||(29265475-29265518)
[»] chr6 (2 HSPs)
chr6 (151-195)||(6171749-6171793)
chr6 (115-180)||(10594338-10594404)


Alignment Details
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 102 - 229
Target Start/End: Original strand, 30489533 - 30489660
Alignment:
Q  102 acagtcccatcaaattgaattgggatttttcccgaagtgacagatttcataatttacacttgatatgagcccctcaaccttctgactttccattattatg 201  Q
    |||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30489533 acagtcccatcaaattgaattgggttttttaccgcagtgacagatttcataatttacacttgatatgagcccctcaaccttctgactttccattattatg 30489632  T
Q  202 attaataacttatttgtttttaaatttt 229  Q
    ||||||||||||||||||||||||||||    
T  30489633 attaataacttatttgtttttaaatttt 30489660  T

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Target: chr3; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 102 - 220
Target Start/End: Original strand, 30520352 - 30520470
Alignment:
Q  102 acagtcccatcaaattgaattgggatttttcccgaagtgacagatttcataatttacacttgatatgagcccctcaaccttctgactttccattattatg 201  Q
    |||||||| ||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30520352 acagtcccttcaaattgaattgggttttttcctgcagtgacagatttcataatttacacttgatatgagcccctcaaccttctgaccttccattattatg 30520451  T
Q  202 attaataacttatttgttt 220  Q
    |||||||||||||||||||    
T  30520452 attaataacttatttgttt 30520470  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 30489432 - 30489493
Alignment:
Q  1 cttgaaggtgccgccatacccatacccttttcaccaaaggggtttggctttggcatctcata 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30489432 cttgaaggtgccgccatacccatacccttttcaccaaaggggtttggctttggcatctcata 30489493  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 105 - 225
Target Start/End: Original strand, 30505370 - 30505497
Alignment:
Q  105 gtcccatcaaattgaattgggatttttcccgaagtgacaga--tttcataatttacacttgatatgagcccctcaaccttctgactttcc------atta 196  Q
    ||||| ||| ||||||||||| |||||||  | ||||||||  |||| ||||||||||||||||||||||||||||| |||||| |||||      ||||    
T  30505370 gtcccttcatattgaattgggttttttccaca-gtgacagagctttcttaatttacacttgatatgagcccctcaactttctgattttccatcattatta 30505468  T
Q  197 ttatgattaataacttatttgtttttaaa 225  Q
    |||| |||| |||||||||||||||||||    
T  30505469 ttattattattaacttatttgtttttaaa 30505497  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 146 - 220
Target Start/End: Original strand, 30516177 - 30516247
Alignment:
Q  146 tttcataatttacacttgatatgagcccctcaaccttctgactttccattattatgattaataacttatttgttt 220  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||   |||||||||||    
T  30516177 tttcataatttacacttgatatgagccc-tcaaccttctgattttccattattattattaa---cttatttgttt 30516247  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 30520270 - 30520312
Alignment:
Q  20 ccatacccttttcaccaaaggggtttggctttggcatctcata 62  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  30520270 ccatacccttttcaccaaaggggtttggctttggcatctcata 30520312  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 105 - 205
Target Start/End: Original strand, 30522226 - 30522328
Alignment:
Q  105 gtcccatcaaattgaattgggatttttcccgaagtgacagat--ttcataatttacacttgatatgagcccctcaaccttctgactttccattattatga 202  Q
    ||||| ||||||||||||  | |||| |||  ||||||||||  |||| ||||||||||||||||||||||||| | ||||||| |||| ||| ||||||    
T  30522226 gtcccttcaaattgaattcaggttttccccacagtgacagatctttcaaaatttacacttgatatgagcccctcgatcttctgattttctatttttatga 30522325  T
Q  203 tta 205  Q
    |||    
T  30522326 tta 30522328  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 30516051 - 30516093
Alignment:
Q  20 ccatacccttttcaccaaaggggtttggctttggcatctcata 62  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  30516051 ccatacccttttcaccaaaggggtttggctttggtatctcata 30516093  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 30525282 - 30525356
Alignment:
Q  147 ttcataatttacacttgatatgagcccctcaaccttctgactttccattattatgattaataacttatttgtttt 221  Q
    |||| |||| |||||||||||||||||||||||||||||| |||  ||| || |||||| |||||| ||||||||    
T  30525282 ttcacaattcacacttgatatgagcccctcaaccttctgattttatattgttttgattattaacttttttgtttt 30525356  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 191
Target Start/End: Original strand, 30487388 - 30487476
Alignment:
Q  105 gtcccatcaaattgaattgggatttttcccgaagtgacaga--tttcataatttacacttgatatgagcccctcaaccttctgactttc 191  Q
    ||||| |||||||| |||||| |||||||   |||| ||||  ||||||||||||  ||||||||||||||||||||||||||| ||||    
T  30487388 gtcccttcaaattggattgggttttttcctacagtggcagagctttcataatttatccttgatatgagcccctcaaccttctgattttc 30487476  T

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Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 203
Target Start/End: Original strand, 30503504 - 30503604
Alignment:
Q  105 gtcccatcaaattgaattgggatttttcccgaagtgacagattt--cataatttacacttgatatgagcccctcaaccttctgactttccattattatga 202  Q
    ||||| ||||||||||||||  |||||||   ||||| |||| |  || ||||||||||| ||||||||||||||||||||| | |||||||| ||||||    
T  30503504 gtcccttcaaattgaattggattttttcctacagtgatagatctatcaaaatttacacttcatatgagcccctcaaccttctcattttccattcttatga 30503603  T
Q  203 t 203  Q
    |    
T  30503604 t 30503604  T

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Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 30505285 - 30505327
Alignment:
Q  20 ccatacccttttcaccaaaggggtttggctttggcatctcata 62  Q
    ||||||||||||||||||| |||| ||||||||||||||||||    
T  30505285 ccatacccttttcaccaaaagggtctggctttggcatctcata 30505327  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 30487747 - 30487815
Alignment:
Q  152 aatttacacttgatatgagcccctcaaccttctgactttccattattatgattaataacttatttgtttt 221  Q
    ||||||||||||||||||||||||||||||||| | |||| ||| || ||| || |||||| ||||||||    
T  30487747 aatttacacttgatatgagcccctcaaccttcttattttcaatttttgtgactattaactt-tttgtttt 30487815  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 30491711 - 30491771
Alignment:
Q  161 ttgatatgagcccctcaaccttctgactttccattattatgattaataacttatttgtttt 221  Q
    ||||||||||||||| |||||||||| |||  ||| ||||||||| |||||| ||||||||    
T  30491711 ttgatatgagccccttaaccttctgattttatattgttatgattattaacttttttgtttt 30491771  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 30449815 - 30449885
Alignment:
Q  118 gaattgggatttttcccgaagtgacagat--ttcataatttacacttgatatgagcccctcaaccttctga 186  Q
    |||||||| ||||||||  ||||| ||||  |||| | |||||||||||||||||||||||||| ||||||    
T  30449815 gaattgggttttttcccacagtgatagatctttcaaattttacacttgatatgagcccctcaacattctga 30449885  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 30483464 - 30483515
Alignment:
Q  152 aatttacacttgatatgagcccctcaaccttctgactttccattattatgat 203  Q
    ||||||||||| ||||||||||||||||||||| | |||  |||||||||||    
T  30483464 aatttacacttcatatgagcccctcaaccttctcattttttattattatgat 30483515  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 8412021 - 8411988
Alignment:
Q  27 cttttcaccaaaggggtttggctttggcatctca 60  Q
    ||||||||||||||||||||||||||| ||||||    
T  8412021 cttttcaccaaaggggtttggctttggtatctca 8411988  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 197
Target Start/End: Original strand, 38510667 - 38510755
Alignment:
Q  113 aaattgaattgggattttt--cccgaagtgacagat--ttcataatttacacttgatatgagcccctcaaccttctgactttccattat 197  Q
    ||||||||||||| |||||  |||  ||||||||||  |||| |||||||||||||||||||||||||||||| |||| |||| |||||    
T  38510667 aaattgaattgggttttttttcccacagtgacagatctttcaaaatttacacttgatatgagcccctcaacctactgattttctattat 38510755  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 38511496 - 38511539
Alignment:
Q  154 tttacacttgatatgagcccctcaaccttctgactttccattat 197  Q
    ||||||||||||||||||||||||||||||||| |||| |||||    
T  38511496 tttacacttgatatgagcccctcaaccttctgattttctattat 38511539  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 173
Target Start/End: Complemental strand, 38995262 - 38995191
Alignment:
Q  104 agtcccatcaaattgaattgggatttttcccgaagtgacagat--ttcataatttacacttgatatgagccc 173  Q
    |||||| ||||||||||||||| ||||||||   |||||||||  |||| ||||||||||||||||||||||    
T  38995262 agtcccttcaaattgaattgggttttttcccactgtgacagatctttcaaaatttacacttgatatgagccc 38995191  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 195
Target Start/End: Original strand, 29265475 - 29265518
Alignment:
Q  152 aatttacacttgatatgagcccctcaaccttctgactttccatt 195  Q
    ||||||||||||||||||||||||||||||||| | ||||||||    
T  29265475 aatttacacttgatatgagcccctcaaccttctcattttccatt 29265518  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 6171749 - 6171793
Alignment:
Q  151 taatttacacttgatatgagcccctcaaccttctgactttccatt 195  Q
    |||||||| ||||||||||| ||||| ||||||||| ||||||||    
T  6171749 taatttactcttgatatgagaccctccaccttctgattttccatt 6171793  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 180
Target Start/End: Original strand, 10594338 - 10594404
Alignment:
Q  115 attgaattgggatttttcccgaagtgacagat--ttcataatttacacttgatatgagcccctcaacc 180  Q
    ||||||||||| |||||||   ||||||||||  |||| |||||||||||||||||||||| ||||||    
T  10594338 attgaattggg-tttttcctacagtgacagatctttcaaaatttacacttgatatgagcccttcaacc 10594404  T

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