View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5429-Insertion-1 (Length: 497)

Name: NF5429-Insertion-1
Description: NF5429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5429-Insertion-1
NF5429-Insertion-1
[»] chr7 (3 HSPs)
chr7 (37-495)||(29275587-29276029)
chr7 (19-100)||(7480152-7480234)
chr7 (199-306)||(18821321-18821430)
[»] chr1 (2 HSPs)
chr1 (192-384)||(31930385-31930575)
chr1 (43-169)||(26653460-26653583)
[»] chr5 (2 HSPs)
chr5 (78-169)||(18435978-18436069)
chr5 (204-272)||(15184153-15184221)
[»] chr8 (1 HSPs)
chr8 (222-272)||(11219715-11219765)
[»] chr3 (1 HSPs)
chr3 (279-365)||(1652332-1652416)
[»] chr6 (1 HSPs)
chr6 (257-311)||(10589803-10589857)
[»] chr2 (1 HSPs)
chr2 (210-272)||(26744081-26744143)


Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 37 - 495
Target Start/End: Original strand, 29275587 - 29276029
Alignment:
Q  37 tagaggttgcaacctcacttccaattcactcattcaatactcaagttagagaaagcaagcttatgagagagttaaagggctgaagcagggtagaaacatc 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29275587 tagaggttgcaacctcacttccaattcactcattcaatactcaagttagagaaagcaagcttatgagagagttaaagggctgaagcagggtagaaacatc 29275686  T
Q  137 aaagccttgtagatcaagtcgactgatgcaacaacatctcgatatctcctatgtcttataagttatatgtaattaatttctatttgtgttgggattaagt 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||    
T  29275687 aaagccttgtagatcaagtcgactgatgcaacaacatctcgatatctcctatg----------------taattaatttctatttgtgttgggattaagt 29275770  T
Q  237 gttattggttagggatctaatgtaaatacttggtctagatgactataaataaattctatttcgttatatccgtgttttcattactgctcttataatactt 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||  ||||||||||||||||||||    
T  29275771 gttattggttagggatctaatgtaaatacttggtctagatgactataaataaattctatttcgttatatctgtgtctttgttactgctcttataatactt 29275870  T
Q  337 ctctgacgtgcaatccgagattgatctttccactaagggcgtgctagaacgtacataccaataatgaaagaagaagttaggaaggatgtagtaaaactct 436  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29275871 ctctgacgtgcaatctgagattgatctttccactaagggcatgctagaacgtacataccaataatgaaagaagaagttaggaaggatgtagtaaaactct 29275970  T
Q  437 tagaaggtgttttgattactctatttcggacaacgctttagtaagcccaattcaggtag 495  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29275971 tagaaggtgttttgattactctatttcggacaacgctttagtaagcccaattcaggtag 29276029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 7480152 - 7480234
Alignment:
Q  19 aagtcaagaaactataaatagagg-ttgcaacctcacttccaattcactcattcaatactcaagttagagaaagcaagcttat 100  Q
    ||||| |||| ||||||||| ||| ||| | |||||||| ||||||| |||||||||| |||| ||||||||||||| |||||    
T  7480152 aagtccagaacctataaataaaggcttgaagcctcactttcaattcattcattcaatattcaacttagagaaagcaatcttat 7480234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 306
Target Start/End: Original strand, 18821321 - 18821430
Alignment:
Q  199 ttatatgtaattaatttctatttgtgttgggattaagtgttattggttagggatctaatgt---aaatacttggtctagatgactataaataaattctat 295  Q
    |||| ||||| |||||| | | |||||||| ||||||||| |||||||| | |||||||||   |||||||| || |||| | |||||||| |||| |||    
T  18821321 ttatttgtaactaatttatctatgtgttgg-attaagtgtaattggttatgaatctaatgtcgtaaatacttagtttagaaggctataaatgaattatat 18821419  T
Q  296 ttcgttatatc 306  Q
    |||||||||||    
T  18821420 ttcgttatatc 18821430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 192 - 384
Target Start/End: Original strand, 31930385 - 31930575
Alignment:
Q  192 ttataagttatatgtaattaatttctatttgtgttgggattaagtgttattggttagggatctaatgtaaatacttggtctagatgactataaataaatt 291  Q
    ||||| ||||| |||| |||||| || | ||||| |||||||||||| ||| |||||| || ||||||||||||||||||| |||| ||| ||||||||     
T  31930385 ttatatgttatgtgtagttaattgctctatgtgtcgggattaagtgtaattagttaggaatttaatgtaaatacttggtctggatggctacaaataaatc 31930484  T
Q  292 ctatttcgttatatccgtgttttcattactgctcttataatacttctctgacgtgcaatccgagattgatctttccactaagggcgtgctaga 384  Q
    |||||  |||||||| |||| || |||||||||||  ||||  ||||| | ||||||||  |||||||||||||  |||  ||||||||||||    
T  31930485 ctattatgttatatcagtgtctttattactgctct--taatgtttctccggcgtgcaatatgagattgatcttttgacttggggcgtgctaga 31930575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 43 - 169
Target Start/End: Complemental strand, 26653583 - 26653460
Alignment:
Q  43 ttgcaacctcacttccaattcactcattcaatactcaagttagagaaagcaagcttatgagagagttaaagggctgaagcagggtagaaacatcaaagcc 142  Q
    ||||||||| |||| ||||||| ||| |||||| ||||||||||||||| ||| ||| |||||||| ||| ||| |||||  ||| | ||   ||||| |    
T  26653583 ttgcaaccttactttcaattcattcactcaatattcaagttagagaaagaaagattaagagagagtgaaaaggcagaagcgaggtggtaa---caaaggc 26653487  T
Q  143 ttgtagatcaagtcgactgatgcaaca 169  Q
    |||||||||||||||||| ||||||||    
T  26653486 ttgtagatcaagtcgacttatgcaaca 26653460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 78 - 169
Target Start/End: Complemental strand, 18436069 - 18435978
Alignment:
Q  78 caagttagagaaagcaagcttatgagagagttaaagggctgaagcagggtagaaacatcaaagccttgtagatcaagtcgactgatgcaaca 169  Q
    |||||||||||||||||| |||||| ||  |||||||||  |||   |||||||||||||||| ||||||||||||||||| ||||||||||    
T  18436069 caagttagagaaagcaagtttatgatagcattaaagggcaaaagtgaggtagaaacatcaaaggcttgtagatcaagtcgattgatgcaaca 18435978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 15184153 - 15184221
Alignment:
Q  204 tgtaattaatttctatttgtgttgggattaagtgttattggttagggatctaatgtaaatacttggtct 272  Q
    ||||| |||||||| ||||| ||  |||||||||||||| ||||||||| ||||||||||| |||||||    
T  15184153 tgtaactaatttctctttgtattttgattaagtgttattagttagggatataatgtaaatatttggtct 15184221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 272
Target Start/End: Complemental strand, 11219765 - 11219715
Alignment:
Q  222 gtgttgggattaagtgttattggttagggatctaatgtaaatacttggtct 272  Q
    ||||||| ||||||||| |||| ||||| ||||||||||||||||||||||    
T  11219765 gtgttggtattaagtgtaattgattaggaatctaatgtaaatacttggtct 11219715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 365
Target Start/End: Complemental strand, 1652416 - 1652332
Alignment:
Q  279 ctataaataaattctatttcgttatatccgtgttttcattactgctcttataatacttctctgacgtgcaatccgagattgatcttt 365  Q
    |||||||||||||||||  | || ||||  ||| || |||||||||||||  || ||| |||||||||||||| |||||||||||||    
T  1652416 ctataaataaattctataacattttatcactgtctttattactgctctta--atgcttatctgacgtgcaatctgagattgatcttt 1652332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 311
Target Start/End: Original strand, 10589803 - 10589857
Alignment:
Q  257 tgtaaatacttggtctagatgactataaataaattctatttcgttatatccgtgt 311  Q
    |||||||||||||| ||  |||||||||||||||| |||||| ||||||| ||||    
T  10589803 tgtaaatacttggtttaactgactataaataaattatatttcattatatcagtgt 10589857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 272
Target Start/End: Original strand, 26744081 - 26744143
Alignment:
Q  210 taatttctatttgtgttgggattaagtgttattggttagggatctaatgtaaatacttggtct 272  Q
    |||||||| ||||||||  |||||| ||| ||| ||||||||| ||||||||||||| |||||    
T  26744081 taatttctctttgtgttaagattaaatgtaattagttagggatttaatgtaaatactaggtct 26744143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University