View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5429-Insertion-2 (Length: 443)
Name: NF5429-Insertion-2
Description: NF5429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5429-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 8 - 442
Target Start/End: Complemental strand, 36915585 - 36915151
Alignment:
| Q |
8 |
gattcttcgttgcttgataatccttttggtaccatcaaattagaattgtcatccatgacatagtcgccaccactatagttaacatcatgagggatgatgt |
107 |
Q |
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| T |
36915585 |
gattcttcgttgcttgataatccttttggtaccatcaaattagaattgtcatccatgacatagtcgccaccactatagttaacatcatgagggatgatgt |
36915486 |
T |
|
| Q |
108 |
cactaatataagaagaagaagatgctctcatcatattattattttcactattgggataataataataattaggaacatcaccaacattgttatatattgg |
207 |
Q |
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| T |
36915485 |
cactaatataagaagaagaagatgctctcatcatattattattttcactattgggatgataataataattaggaacatcaccaacattgttatatattgg |
36915386 |
T |
|
| Q |
208 |
gatatttggaatttgagaactagtataaggtaaggaagaatgaatatgttgtttttgttgtaaatcgttacaataagctagtaacgtttttacatgatct |
307 |
Q |
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| T |
36915385 |
gatatttggaatttgagaactagtataaggtaaggaagaatgaatatgttgtttttgttgtaaatcgttacaataagctagtaacgtttttacatgatct |
36915286 |
T |
|
| Q |
308 |
aactcttccatagactgctttaacatacctccataatccataataacaccaagacatccatgaacgggaaattttgcacgaatatccgactcaataatta |
407 |
Q |
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| T |
36915285 |
aactcttccatagactgctttaacatacctccataatccataataacaccaagacatccatgaacgggaaattttgcacgaatatccgactcaataatta |
36915186 |
T |
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| Q |
408 |
tggatctcatcgcaacatctttttgatcatcatcc |
442 |
Q |
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| T |
36915185 |
tggatctcatcgcaacatctttttgatcatcatcc |
36915151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 349 - 401
Target Start/End: Complemental strand, 3104485 - 3104433
Alignment:
| Q |
349 |
aataacaccaagacatccatgaacgggaaattttgcacgaatatccgactcaa |
401 |
Q |
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| T |
3104485 |
aataacaccaacacatccatgaacggggaattctgcacgaatatccgactcaa |
3104433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 442
Target Start/End: Original strand, 3080616 - 3080709
Alignment:
| Q |
349 |
aataacaccaagacatccatgaacgggaaattttgcacgaatatccgactcaataattatggatctcatcgcaacatctttttgatcatcatcc |
442 |
Q |
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| T |
3080616 |
aataacaccaagacatccatgaattgggaaatttgcacgaattttcgactcaacaataattgatttcattgcttcatctctttgaccaccatcc |
3080709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 427
Target Start/End: Original strand, 3093936 - 3094017
Alignment:
| Q |
346 |
cataataacaccaagacatccatgaacgggaaattttgcacgaatatccgactcaataattatggatctcatcgcaacatct |
427 |
Q |
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| T |
3093936 |
cataataacatcaagacatccaccaacagggaattgagcacgcatatccgactcaataataattgatttcattgcatcatct |
3094017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 401
Target Start/End: Complemental strand, 41122259 - 41122133
Alignment:
| Q |
275 |
ttacaataagctagtaacgtttttacatgatctaactcttccatagactgctttaacatacctccataatccataataacaccaagacatccatgaacgg |
374 |
Q |
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|||||||||||||||| || |||||||||||||||| || | ||||| ||||||||| ||||| || ||||||||| ||||||||| | | | |
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| T |
41122259 |
ttacaataagctagtagatttcttacatgatctaactcatcaacagacttctttaacatgcctccgtacatatgaataacaccgagacatccagtagcag |
41122160 |
T |
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| Q |
375 |
gaaattttgcacgaatatccgactcaa |
401 |
Q |
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| T |
41122159 |
ggaatcttgcacgcatatccgactcaa |
41122133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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