View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5429-Insertion-4 (Length: 187)
Name: NF5429-Insertion-4
Description: NF5429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5429-Insertion-4 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 2e-69; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 7 - 187
Target Start/End: Original strand, 28595739 - 28595922
Alignment:
| Q |
7 |
aaaagtttggccaattcagaccttccaaaatttacagatgatctaacaactcttatatcccattttaccaataaaggtcttactctcaaagatatggtga |
106 |
Q |
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| T |
28595739 |
aaaagtttggccaattcagaccttccaaaatttacagatgatctaacaactctaatatcccattttaccaataaaggtcttactctcaaagatatggtta |
28595838 |
T |
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| Q |
107 |
ctttatctggtaagttcatcactaaccca---nnnnnnncaaacatgcaaatctttatatttgtgtatatgactaatttgtaaa |
187 |
Q |
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| T |
28595839 |
ctttatctggtaagttcatcactaacccatttttttttcaaaacatggaaatctttatatttgtgtatatgactaatttgtaaa |
28595922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 6 - 135
Target Start/End: Original strand, 32493958 - 32494087
Alignment:
| Q |
6 |
caaaagtttggccaattcagaccttccaaaatttacagatgatctaacaactcttatatcccattttaccaataaaggtcttactctcaaagatatggtg |
105 |
Q |
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| T |
32493958 |
caaaagtcaggccaattcagaccttccaaaatttacggatgatctaacaactcttatagcccattttaccaataaaggtcttactctcaaagatatggtt |
32494057 |
T |
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| Q |
106 |
actttatctggtaagttcatcactaaccca |
135 |
Q |
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| T |
32494058 |
actttatctggtaagttcatcactgaccca |
32494087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 28587150 - 28587083
Alignment:
| Q |
6 |
caaaagtttggccaattcagaccttccaaaatttacagatgatctaacaactcttatatcccatttta |
73 |
Q |
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| T |
28587150 |
caaaagtttggccaataccgaccttccgttatttacagacgatcttacaactcttatatctcatttta |
28587083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 28592248 - 28592181
Alignment:
| Q |
6 |
caaaagtttggccaattcagaccttccaaaatttacagatgatctaacaactcttatatcccatttta |
73 |
Q |
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|||||||||||||||| | |||||||| |||||| || ||||| |||||||||||||| ||||||| |
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| T |
28592248 |
caaaagtttggccaatactgaccttccgttatttacggacgatcttacaactcttatatctcatttta |
28592181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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