View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5429_high_10 (Length: 208)
Name: NF5429_high_10
Description: NF5429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5429_high_10 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 2 - 208
Target Start/End: Complemental strand, 27778613 - 27778407
Alignment:
| Q |
2 |
atgagtatgttttcaatgtcatttctttccttagctcaatccaagttctataccctccctatcattggagacttccctctaaatatccaaatattattca |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27778613 |
atgagtatgttttcaatgtcatttctttccttagctcaatccaagttctataccctccctatcattggagacttccctctaaatatccaaatattattca |
27778514 |
T |
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| Q |
102 |
actctagtaacattttttcacttttactatggtgtaccttaatagcatctatactaaccttttacctaaagaaatgttccaaaaatatatatctagtaga |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27778513 |
actctagtaacattttttcacttttactatggtgtaccttaatagcatctatactaaccttttacctaaagaaatgttccaaaaatatatatctagtaga |
27778414 |
T |
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| Q |
202 |
tttttca |
208 |
Q |
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||||||| |
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| T |
27778413 |
tttttca |
27778407 |
T |
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Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 2 - 198
Target Start/End: Complemental strand, 19748552 - 19748359
Alignment:
| Q |
2 |
atgagtatgttttcaatgtcatttctttccttagctcaatccaagttctataccctccctatcattggagacttccctctaaatatccaaatattattca |
101 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||| |||||||| |||||| |||||||| |||||||||||||| |
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| T |
19748552 |
atgagtatgttttcaatgtcattccttttcttagctcaatccaagtcttataccctctctatcattagagact---atctaaatacccaaatattattca |
19748456 |
T |
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| Q |
102 |
actctagtaacattttttcacttttactatggtgtaccttaatagcatctatactaaccttttacctaaagaaatgttccaaaaatatatatctagt |
198 |
Q |
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| T |
19748455 |
agtatagtaatattttctcacttttaatgtggtgtgcctcaatatcctatatagtaacattttaccaaaagaaatgctcaaaaaaggtatatctagt |
19748359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 19791254 - 19791447
Alignment:
| Q |
2 |
atgagtatgttttcaatgtcatttctttccttagctcaatccaagttctataccctccctatcattggagacttccctctaaatatccaaatattattca |
101 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||| |||||||| |||||| |||||||| |||||||||||||| |
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| T |
19791254 |
atgagtatgttttcaatgtcattccttttcttagctcaatccaagtcttataccctctctatcattagagact---atctaaatacccaaatattattca |
19791350 |
T |
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| Q |
102 |
actctagtaacattttttcacttttactatggtgtaccttaatagcatctatactaaccttttacctaaagaaatgttccaaaaatatatatctagt |
198 |
Q |
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| T |
19791351 |
agtatagtaatattttctcacttttaatgtggtgtgcctcaatatcctatatagtaacattttaccaaaagaaatgctcaaaaaaggtatatctagt |
19791447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 2 - 198
Target Start/End: Complemental strand, 19678521 - 19678328
Alignment:
| Q |
2 |
atgagtatgttttcaatgtcatttctttccttagctcaatccaagttctataccctccctatcattggagacttccctctaaatatccaaatattattca |
101 |
Q |
| |
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|||||| |||||||||||||||| |||| ||||||||||||||||| | ||||||| ||||||| |||||| |||||||| |||||||||||||| |
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| T |
19678521 |
atgagtgtgttttcaatgtcattccttttcttagctcaatccaagtcttctaccctctgtatcattagagacta---tctaaatacccaaatattattca |
19678425 |
T |
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| Q |
102 |
actctagtaacattttttcacttttactatggtgtaccttaatagcatctatactaaccttttacctaaagaaatgttccaaaaatatatatctagt |
198 |
Q |
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| | |||||| ||||| ||||||||| | |||||| ||| |||||| | |||| |||| ||||||| ||||||||| || ||||| |||||||||| |
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| T |
19678424 |
agtatagtaatattttctcacttttaatgtggtgtgcctcaatagcctttatagtaacattttaccaaaagaaatgctcaaaaaaggtatatctagt |
19678328 |
T |
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