View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5429_low_2 (Length: 318)

Name: NF5429_low_2
Description: NF5429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5429_low_2
NF5429_low_2
[»] chr7 (7 HSPs)
chr7 (85-309)||(41620357-41620580)
chr7 (151-309)||(41615740-41615897)
chr7 (13-54)||(41621590-41621631)
chr7 (151-271)||(15999347-15999465)
chr7 (104-155)||(41615926-41615977)
chr7 (173-236)||(6240011-6240074)
chr7 (151-271)||(14585477-14585595)
[»] chr2 (3 HSPs)
chr2 (172-302)||(26312822-26312952)
chr2 (172-271)||(38716537-38716636)
chr2 (250-306)||(34121640-34121696)
[»] chr8 (1 HSPs)
chr8 (181-314)||(27423115-27423247)
[»] chr6 (1 HSPs)
chr6 (173-302)||(29178786-29178915)
[»] chr5 (2 HSPs)
chr5 (173-241)||(9779666-9779734)
chr5 (106-155)||(9779784-9779833)
[»] chr1 (3 HSPs)
chr1 (173-267)||(35880870-35880964)
chr1 (176-234)||(16799058-16799116)
chr1 (173-243)||(25291915-25291985)


Alignment Details
Target: chr7 (Bit Score: 173; Significance: 5e-93; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 85 - 309
Target Start/End: Complemental strand, 41620580 - 41620357
Alignment:
Q  85 aacaaaataccaggcacggattgatacttagaaaatagttgattattttcaatacatatcgagtgcaagtaaagtatcaattcaacgaaggattgaagtg 184  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||    
T  41620580 aacaaaataccaggcaccgattgatacttagaaaatagttgattattttcaatacacatcgagtgcaagtaaagtatcaatttaacga-ggattgaagtg 41620482  T
Q  185 gataagttctaagtatttttaaatatcaaatttagttatttatgatccaaaatgacaaacaatacagataaaattttaagattctaagatactaacataa 284  Q
    ||||||||  |||||||||||||||| || |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  41620481 gataagtttcaagtatttttaaatattaagtttagttatttatgatccaaaatgacaaacaacagagataaaattttaagattctaagatactaacataa 41620382  T
Q  285 aaagcagaagtaaataaagcatata 309  Q
    || ||| ||||||||||||||||||    
T  41620381 aatgcataagtaaataaagcatata 41620357  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 151 - 309
Target Start/End: Complemental strand, 41615897 - 41615740
Alignment:
Q  151 aagtaaagtatcaattcaacgaaggattgaagtggataagttctaagtatttttaaatatcaaatttagttatttatgatccaaaatgacaaacaataca 250  Q
    |||||||||||| || ||| || ||||||| |||||| |||| |||||||||  ||||| ||| ||||||||||||  |||||||||||||||||| |||    
T  41615897 aagtaaagtatcgatccaatga-ggattgatgtggattagttttaagtatttccaaataccaagtttagttatttaacatccaaaatgacaaacaacaca 41615799  T
Q  251 gataaaattttaagattctaagatactaacataaaaagcagaagtaaataaagcatata 309  Q
     ||| |||||||||||||| ||||||||| ||| || ||| ||||||| ||||||||||    
T  41615798 aatacaattttaagattcttagatactaaaatagaatgcacaagtaaacaaagcatata 41615740  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 41621631 - 41621590
Alignment:
Q  13 aatataagatgagatactgctaagagctactgacaagaaaca 54  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  41621631 aatataagatgagatactgctaagagctactcacaagaaaca 41621590  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 151 - 271
Target Start/End: Original strand, 15999347 - 15999465
Alignment:
Q  151 aagtaaagtatcaattcaacgaaggattgaagtggataagttctaagtatttttaaatatcaaatttagttatttatgatccaaaatgacaaacaataca 250  Q
    ||||||||||||||| | ||||||| | ||| |||||||||| |||||||||| ||||   || |||||||||||| |||||||| | | |||| ||| |    
T  15999347 aagtaaagtatcaatcccacgaaggttggaa-tggataagttataagtattttcaaatgctaagtttagttatttaagatccaaagtcaaaaac-ataaa 15999444  T
Q  251 gataaaattttaagattctaa 271  Q
    ||||| |||||||||| ||||    
T  15999445 gataagattttaagatgctaa 15999465  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 41615977 - 41615926
Alignment:
Q  104 attgatacttagaaaatagttgattattttcaatacatatcgagtgcaagta 155  Q
    |||||| ||||||||||||||||||||||| ||| |||||| ||||||||||    
T  41615977 attgatgcttagaaaatagttgattattttgaatgcatatctagtgcaagta 41615926  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 6240074 - 6240011
Alignment:
Q  173 aggattgaagtggataagttctaagtatttttaaatatcaaatttagttatttatgatccaaaa 236  Q
    |||||||  |||||||||||||||||||||||||||   || |||| ||||||| |||||||||    
T  6240074 aggattgtcgtggataagttctaagtatttttaaatgctaagtttaattatttaagatccaaaa 6240011  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 271
Target Start/End: Original strand, 14585477 - 14585595
Alignment:
Q  151 aagtaaagtatcaattcaacgaaggattgaagtggataagttctaagtatttttaaatatcaaatttagttatttatgatccaaaatgacaaacaataca 250  Q
    |||||||||||| || | || |||| ||| |||||||||||| |||||||||| ||||   || | |||||||||| |||||||| | | |||| ||| |    
T  14585477 aagtaaagtatcgatcccacaaagg-ttggagtggataagttataagtattttcaaatgctaagtatagttatttaagatccaaagtcaaaaac-ataaa 14585574  T
Q  251 gataaaattttaagattctaa 271  Q
    ||||| |||||||||| ||||    
T  14585575 gataagattttaagatgctaa 14585595  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 172 - 302
Target Start/End: Complemental strand, 26312952 - 26312822
Alignment:
Q  172 aaggattgaagtggataagttctaagtatttttaaatatcaaatttagttatttatgatccaaaatgacaaacaatacagataaaattttaagattctaa 271  Q
    ||||||||||||  |||||||| |||||||| |||||   || |||||||||||| |||||||||| ||||| || | |||||| |||||||||||||||    
T  26312952 aaggattgaagttaataagttccaagtatttataaatgctaagtttagttatttaagatccaaaataacaaataacaaagataagattttaagattctaa 26312853  T
Q  272 gatactaacataaaaagcagaagtaaataaa 302  Q
    || | |||  ||||| ||| |||||||||||    
T  26312852 gacattaaagtaaaatgcacaagtaaataaa 26312822  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 172 - 271
Target Start/End: Complemental strand, 38716636 - 38716537
Alignment:
Q  172 aaggattgaagtggataagttctaagtatttttaaatatcaaatttagttatttatgatccaaaatgacaaacaatacagataaaattttaagattctaa 271  Q
    |||||||| |||| |||| ||||||||||||||||||   |  |||||||||||| |||||||||||||||| || | |||||| |||||| ||||||||    
T  38716636 aaggattggagtgaataaattctaagtatttttaaatgctacgtttagttatttaagatccaaaatgacaaataacaaagataagattttaggattctaa 38716537  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 306
Target Start/End: Original strand, 34121640 - 34121696
Alignment:
Q  250 agataaaattttaagattctaagatactaacataaaaagcagaagtaaataaagcat 306  Q
    |||||| ||||||||||||||||| |||||  ||||| ||| |||||||||||||||    
T  34121640 agataatattttaagattctaagacactaaagtaaaatgcaaaagtaaataaagcat 34121696  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 181 - 314
Target Start/End: Original strand, 27423115 - 27423247
Alignment:
Q  181 agtggataagttctaagtatttttaaatatcaaatttagttatttatgatccaaaatgacaaacaatacagataaaattttaagattctaagatactaac 280  Q
    ||||||||| |||||| |||||| |||| | ||||||||||||| | |||||||| ||| ||  | || |||||   |||||||||||||||| |||||     
T  27423115 agtggataaattctaaatattttcaaatct-aaatttagttattcaagatccaaagtgataattagtaaagatagtgttttaagattctaagacactaaa 27423213  T
Q  281 ataaaaagcagaagtaaataaagcatatataaaa 314  Q
     |||||  ||||||||||||||||||||| ||||    
T  27423214 gtaaaattcagaagtaaataaagcatataaaaaa 27423247  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 302
Target Start/End: Original strand, 29178786 - 29178915
Alignment:
Q  173 aggattgaagtggataagttctaagtatttttaaatatcaaatttagttatttatgatccaaaatgacaaacaatacagataaaattttaagattctaag 272  Q
    ||||||||||||||||||||||||||||||| |||||  || ||||| || |||   |||||||||| |||||| | ||| || |||||  | |||||||    
T  29178786 aggattgaagtggataagttctaagtattttcaaatactaagtttaggtagttaatgtccaaaatgataaacaacaaagacaatatttttgggttctaag 29178885  T
Q  273 atactaacataaaaagcagaagtaaataaa 302  Q
    | |||||   |||| |||||| ||||||||    
T  29178886 acactaaaggaaaatgcagaattaaataaa 29178915  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 173 - 241
Target Start/End: Complemental strand, 9779734 - 9779666
Alignment:
Q  173 aggattgaagtggataagttctaagtatttttaaatatcaaatttagttatttatgatccaaaatgaca 241  Q
    |||||||| ||||||||||| |||  |||||||||||| || |||||||||||| |||||||| |||||    
T  9779734 aggattgatgtggataagttttaatcatttttaaatattaagtttagttatttaagatccaaagtgaca 9779666  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 155
Target Start/End: Complemental strand, 9779833 - 9779784
Alignment:
Q  106 tgatacttagaaaatagttgattattttcaatacatatcgagtgcaagta 155  Q
    |||| ||||||||||||||| ||||||||||| ||||| ||||| |||||    
T  9779833 tgatgcttagaaaatagttgtttattttcaatgcatattgagtgtaagta 9779784  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 267
Target Start/End: Original strand, 35880870 - 35880964
Alignment:
Q  173 aggattgaagtggataagttctaagtatttttaaatatcaaatttagttatttatgatccaaaatgacaaacaatacagataaaattttaagatt 267  Q
    ||||||||||| || ||||||| ||||||||||||||| || ||||||||||||     |||||||||||| || | | |||| |||||||||||    
T  35880870 aggattgaagttgacaagttcttagtatttttaaatatgaagtttagttatttaaatatcaaaatgacaaataaaaaaaataagattttaagatt 35880964  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 16799058 - 16799116
Alignment:
Q  176 attgaagtggataagttctaagtatttttaaatatcaaatttagttatttatgatccaa 234  Q
    |||| ||||||||||||||||||||||| ||||   || |||||||||||| |||||||    
T  16799058 attgtagtggataagttctaagtattttcaaatggtaagtttagttatttaagatccaa 16799116  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 25291985 - 25291915
Alignment:
Q  173 aggattgaagtggataagttctaagtatttttaaatatcaaatttagttatttatgatccaaaatgacaaa 243  Q
    ||||||| |||||| |  || |||||||||| |||||  || |||||||||||| ||||||||||||||||    
T  25291985 aggattggagtggacagattttaagtattttcaaatactaagtttagttatttaagatccaaaatgacaaa 25291915  T

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