View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5429_low_5 (Length: 277)

Name: NF5429_low_5
Description: NF5429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5429_low_5
NF5429_low_5
[»] chr1 (17 HSPs)
chr1 (89-277)||(45701194-45701381)
chr1 (222-260)||(15892795-15892833)
chr1 (222-267)||(9413796-9413841)
chr1 (222-258)||(35308183-35308219)
chr1 (222-277)||(44243871-44243926)
chr1 (222-277)||(51046140-51046195)
chr1 (222-260)||(39452458-39452496)
chr1 (222-267)||(2613720-2613765)
chr1 (214-267)||(17917156-17917209)
chr1 (218-267)||(44119490-44119539)
chr1 (222-262)||(21041342-21041382)
chr1 (222-258)||(24695557-24695593)
chr1 (222-258)||(25532971-25533007)
chr1 (222-262)||(29233997-29234037)
chr1 (222-258)||(48681960-48681996)
chr1 (222-262)||(50595906-50595946)
chr1 (222-262)||(52043271-52043311)
[»] chr5 (10 HSPs)
chr5 (222-267)||(16193105-16193150)
chr5 (222-258)||(27903111-27903147)
chr5 (222-262)||(22619872-22619912)
chr5 (222-269)||(4573075-4573122)
chr5 (222-260)||(6025306-6025344)
chr5 (225-262)||(12265915-12265952)
chr5 (222-267)||(12909184-12909229)
chr5 (222-262)||(28207130-28207170)
chr5 (222-258)||(30488923-30488959)
chr5 (222-274)||(42515805-42515857)
[»] chr8 (14 HSPs)
chr8 (217-267)||(26885656-26885706)
chr8 (222-274)||(37750010-37750062)
chr8 (222-267)||(1644691-1644736)
chr8 (222-258)||(2958423-2958459)
chr8 (217-277)||(5330060-5330120)
chr8 (222-258)||(8717502-8717538)
chr8 (222-258)||(8982565-8982601)
chr8 (218-262)||(13004159-13004203)
chr8 (222-262)||(14975886-14975926)
chr8 (224-252)||(22941192-22941220)
chr8 (222-274)||(27134431-27134483)
chr8 (225-277)||(30218204-30218256)
chr8 (222-262)||(32555252-32555292)
chr8 (222-258)||(35103104-35103140)
[»] chr7 (15 HSPs)
chr7 (222-267)||(31885963-31886008)
chr7 (222-274)||(23198760-23198812)
chr7 (222-277)||(1261173-1261228)
chr7 (222-267)||(7908591-7908636)
chr7 (222-262)||(9690336-9690376)
chr7 (222-274)||(20205820-20205872)
chr7 (222-262)||(46207758-46207798)
chr7 (222-262)||(47589576-47589616)
chr7 (223-262)||(13955479-13955518)
chr7 (222-259)||(20762838-20762875)
chr7 (222-262)||(6528828-6528868)
chr7 (222-262)||(19416512-19416552)
chr7 (222-262)||(27993052-27993092)
chr7 (222-258)||(44558801-44558837)
chr7 (222-262)||(47677600-47677640)
[»] chr3 (18 HSPs)
chr3 (222-258)||(5030203-5030239)
chr3 (222-258)||(7938722-7938758)
chr3 (219-270)||(12408173-12408224)
chr3 (216-267)||(49088744-49088795)
chr3 (217-262)||(14827518-14827563)
chr3 (221-262)||(32836170-32836211)
chr3 (221-262)||(51379802-51379843)
chr3 (222-258)||(2496553-2496589)
chr3 (231-267)||(19126695-19126731)
chr3 (222-262)||(21506781-21506821)
chr3 (222-262)||(22722400-22722440)
chr3 (222-262)||(25340947-25340987)
chr3 (222-262)||(28244127-28244167)
chr3 (230-258)||(41493909-41493937)
chr3 (222-258)||(43345034-43345070)
chr3 (222-258)||(43490444-43490480)
chr3 (222-262)||(44579634-44579674)
chr3 (230-262)||(52575953-52575985)
[»] chr4 (16 HSPs)
chr4 (222-277)||(50380844-50380899)
chr4 (222-262)||(9913897-9913937)
chr4 (222-262)||(10401419-10401459)
chr4 (222-262)||(13556713-13556753)
chr4 (230-262)||(30305984-30306016)
chr4 (222-262)||(35287530-35287570)
chr4 (222-277)||(14577515-14577570)
chr4 (216-274)||(10497251-10497309)
chr4 (224-262)||(29681480-29681518)
chr4 (230-272)||(36059034-36059076)
chr4 (230-267)||(2448155-2448192)
chr4 (222-274)||(10399250-10399303)
chr4 (222-259)||(32871680-32871717)
chr4 (222-262)||(9946425-9946465)
chr4 (222-262)||(12671771-12671811)
chr4 (222-274)||(43722763-43722815)
[»] scaffold0031 (1 HSPs)
scaffold0031 (217-262)||(47264-47309)
[»] chr2 (16 HSPs)
chr2 (225-262)||(16221369-16221406)
chr2 (222-267)||(17736791-17736836)
chr2 (222-267)||(41672302-41672347)
chr2 (224-261)||(42061199-42061236)
chr2 (217-262)||(42714432-42714477)
chr2 (222-262)||(29133507-29133547)
chr2 (217-258)||(19976146-19976187)
chr2 (222-267)||(20517020-20517065)
chr2 (222-267)||(32957561-32957606)
chr2 (230-267)||(35404573-35404610)
chr2 (224-277)||(44488018-44488071)
chr2 (230-274)||(6765616-6765660)
chr2 (222-258)||(9517036-9517072)
chr2 (222-258)||(34464436-34464472)
chr2 (222-262)||(40365429-40365469)
chr2 (222-274)||(41187468-41187520)
[»] chr6 (11 HSPs)
chr6 (222-258)||(9111045-9111081)
chr6 (224-258)||(12700448-12700482)
chr6 (217-274)||(20720792-20720849)
chr6 (217-258)||(32193886-32193927)
chr6 (222-262)||(4494894-4494934)
chr6 (222-262)||(9444955-9444995)
chr6 (222-262)||(14350947-14350987)
chr6 (222-262)||(21373429-21373469)
chr6 (222-262)||(26320586-26320626)
chr6 (222-258)||(33938706-33938742)
chr6 (222-258)||(34828304-34828340)
[»] scaffold0012 (1 HSPs)
scaffold0012 (222-277)||(118817-118872)
[»] scaffold0005 (1 HSPs)
scaffold0005 (222-277)||(239805-239860)
[»] scaffold0188 (1 HSPs)
scaffold0188 (222-258)||(28140-28176)
[»] scaffold0180 (1 HSPs)
scaffold0180 (222-258)||(17730-17766)
[»] scaffold0160 (1 HSPs)
scaffold0160 (222-262)||(22909-22949)
[»] scaffold0154 (1 HSPs)
scaffold0154 (222-262)||(37533-37573)
[»] scaffold0122 (1 HSPs)
scaffold0122 (222-258)||(14213-14249)
[»] scaffold0011 (1 HSPs)
scaffold0011 (222-262)||(185261-185301)
[»] scaffold0003 (1 HSPs)
scaffold0003 (222-262)||(361271-361311)


Alignment Details
Target: chr1 (Bit Score: 149; Significance: 9e-79; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 89 - 277
Target Start/End: Original strand, 45701194 - 45701381
Alignment:
Q  89 aaatatgggaaaattagttttaaattttacaatatgactattaaacacatacaatttttcctctcaaaagaaaaactttcacgatagaatttaattttga 188  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  45701194 aaatatgggaaa-ttaattttaaattttacaatatgactattaaacacatacaacttttcctctcaaaagaaaaactttcacaatagaatttaattttga 45701292  T
Q  189 gatggaaaaagattcatgttggtctcaatgttttcgtgagtttagttcagttggtatgaacaatgcataaaataagtaaagtccggagt 277  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||| |||||    
T  45701293 gatggaaaaagattcatgttggtcttaatgttttcgtgagtttagctcagttggtatgaacaatgcataaaatatgtaaggtctggagt 45701381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 260
Target Start/End: Original strand, 15892795 - 15892833
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaa 260  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  15892795 tcgtgagcttagttcagttggtatgaacaatgcataaaa 15892833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 9413796 - 9413841
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaataagtaa 267  Q
    ||||||||||||||||||||||| ||||||||||||| ||| ||||    
T  9413796 tcgtgagtttagttcagttggtaagaacaatgcataatatatgtaa 9413841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 35308183 - 35308219
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataa 258  Q
    ||||||| |||||||||||||||||||||||||||||    
T  35308183 tcgtgagcttagttcagttggtatgaacaatgcataa 35308219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 277
Target Start/End: Original strand, 44243871 - 44243926
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaataagtaaagtccggagt 277  Q
    |||||||||||| |||||||||| ||||||||||||| ||| |||| |||| ||||    
T  44243871 tcgtgagtttagctcagttggtaggaacaatgcataatatatgtaaggtccagagt 44243926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 277
Target Start/End: Original strand, 51046140 - 51046195
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaataagtaaagtccggagt 277  Q
    |||||||||||  |||||||||||||||||| ||||||||| |||| || ||||||    
T  51046140 tcgtgagtttaactcagttggtatgaacaatacataaaatatgtaaggttcggagt 51046195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 260
Target Start/End: Original strand, 39452458 - 39452496
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaa 260  Q
    ||||||| |||| ||||||||||||||||||||||||||    
T  39452458 tcgtgagcttagctcagttggtatgaacaatgcataaaa 39452496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 2613720 - 2613765
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaataagtaa 267  Q
    ||||||| |||| |||||||||||| ||||||||||||||| ||||    
T  2613720 tcgtgagcttagctcagttggtatggacaatgcataaaatatgtaa 2613765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 267
Target Start/End: Complemental strand, 17917209 - 17917156
Alignment:
Q  214 caatgttttcgtgagtttagttcagttggtatgaacaatgcataaaataagtaa 267  Q
    |||||| || |||||||||| ||||||| |||| ||||||||||||||| ||||    
T  17917209 caatgtctttgtgagtttagctcagttgatatggacaatgcataaaatatgtaa 17917156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 44119539 - 44119490
Alignment:
Q  218 gttttcgtgagtttagttcagttggtatgaacaatgcataaaataagtaa 267  Q
    ||||||||||||||| || |||||||||||||||| ||||| ||| ||||    
T  44119539 gttttcgtgagtttaatttagttggtatgaacaatacataatatatgtaa 44119490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 21041342 - 21041382
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    |||||||||||  |||||||||||| |||||||||||||||    
T  21041342 tcgtgagtttacctcagttggtatggacaatgcataaaata 21041382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 24695557 - 24695593
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataa 258  Q
    |||||||||||| |||||||||||||||||| |||||    
T  24695557 tcgtgagtttagctcagttggtatgaacaatacataa 24695593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 25532971 - 25533007
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataa 258  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  25532971 tcgtgagcttagttcagttggtatggacaatgcataa 25533007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 29234037 - 29233997
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    |||||||||||| |||||||||||  |||||||||||||||    
T  29234037 tcgtgagtttagctcagttggtatagacaatgcataaaata 29233997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 48681996 - 48681960
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataa 258  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  48681996 tcgtgagcttagctcagttggtatgaacaatgcataa 48681960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 50595946 - 50595906
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    ||||||| |||| ||| ||||||||||||||||||||||||    
T  50595946 tcgtgagcttagctcaattggtatgaacaatgcataaaata 50595906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 52043271 - 52043311
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    |||||||||||| |||||||||||| | |||||||||||||    
T  52043271 tcgtgagtttagctcagttggtatggataatgcataaaata 52043311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 16193105 - 16193150
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaataagtaa 267  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  16193105 tcgtgagtttagttcagttggtatgaacaatgcataaaatatgtaa 16193150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 27903111 - 27903147
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataa 258  Q
    |||||||||||||||||||||||||||||||||||||    
T  27903111 tcgtgagtttagttcagttggtatgaacaatgcataa 27903147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 22619872 - 22619912
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    ||||||| |||| ||||||||||||||||||||||||||||    
T  22619872 tcgtgagcttagctcagttggtatgaacaatgcataaaata 22619912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 269
Target Start/End: Complemental strand, 4573122 - 4573075
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaataagtaaag 269  Q
    ||||||| ||||||||||||||||| ||||||||||| ||||| ||||    
T  4573122 tcgtgagcttagttcagttggtatggacaatgcataatataagcaaag 4573075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 260
Target Start/End: Original strand, 6025306 - 6025344
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaa 260  Q
    ||||||||||||||||||| ||||| |||||||||||||    
T  6025306 tcgtgagtttagttcagttagtatggacaatgcataaaa 6025344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 225 - 262
Target Start/End: Original strand, 12265915 - 12265952
Alignment:
Q  225 tgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  12265915 tgagcttagttcagttggtatggacaatgcataaaata 12265952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 12909229 - 12909184
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaataagtaa 267  Q
    |||||| ||||| |||||||||||||||||||||||| ||| ||||    
T  12909229 tcgtgaatttagctcagttggtatgaacaatgcataatatatgtaa 12909184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 28207130 - 28207170
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    ||||||| |||| |||||||||||| |||||||||||||||    
T  28207130 tcgtgagcttagctcagttggtatggacaatgcataaaata 28207170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 30488923 - 30488959
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataa 258  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  30488923 tcgtgagcttagttcagttgatatgaacaatgcataa 30488959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 274
Target Start/End: Original strand, 42515805 - 42515857
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaataagtaaagtccgg 274  Q
    ||||||| ||| ||||||||||||| ||||||||||| ||| |||| ||||||    
T  42515805 tcgtgagcttaattcagttggtatggacaatgcataatatatgtaaggtccgg 42515857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 26885706 - 26885656
Alignment:
Q  217 tgttttcgtgagtttagttcagttggtatgaacaatgcataaaataagtaa 267  Q
    |||| |||||||||||| |||||||||||||||||||||||||||| ||||    
T  26885706 tgttctcgtgagtttagctcagttggtatgaacaatgcataaaatatgtaa 26885656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 37750062 - 37750010
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaataagtaaagtccgg 274  Q
    |||||||||||| ||||||| |||||||||||||||| ||| | |||||||||    
T  37750062 tcgtgagtttagctcagttgatatgaacaatgcataatatatgcaaagtccgg 37750010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 1644736 - 1644691
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaataagtaa 267  Q
    ||||||| |||| ||||||||||||| |||||||||||||| ||||    
T  1644736 tcgtgagcttagctcagttggtatgagcaatgcataaaatatgtaa 1644691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 2958423 - 2958459
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataa 258  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  2958423 tcgtgagcttagttcagttggtatggacaatgcataa 2958459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 5330120 - 5330060
Alignment:
Q  217 tgttttcgtgagtttagttcagttggtatgaacaatgcataaaataagtaaagtccggagt 277  Q
    |||| |||| ||||||||||||||| |  ||||||||||||||||| |||| || ||||||    
T  5330120 tgttctcgtaagtttagttcagttgattagaacaatgcataaaatatgtaaggtgcggagt 5330060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 8717538 - 8717502
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataa 258  Q
    |||||||||||| |||||||||||| |||||||||||    
T  8717538 tcgtgagtttagctcagttggtatggacaatgcataa 8717502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 8982565 - 8982601
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataa 258  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  8982565 tcgtgagtttaattcagttagtatgaacaatgcataa 8982601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 13004159 - 13004203
Alignment:
Q  218 gttttcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    ||||||||||| |||  |||||||||||| |||||||||||||||    
T  13004159 gttttcgtgagcttaactcagttggtatggacaatgcataaaata 13004203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 14975926 - 14975886
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    ||||||| |||| |||||||||||||||| |||||||||||    
T  14975926 tcgtgagcttagctcagttggtatgaacagtgcataaaata 14975886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 252
Target Start/End: Original strand, 22941192 - 22941220
Alignment:
Q  224 gtgagtttagttcagttggtatgaacaat 252  Q
    |||||||||||||||||||||||||||||    
T  22941192 gtgagtttagttcagttggtatgaacaat 22941220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 27134483 - 27134431
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaataagtaaagtccgg 274  Q
    |||||||||||  ||||||||||||||||||| |||| ||| | |||||||||    
T  27134483 tcgtgagtttaactcagttggtatgaacaatgtataatatatgcaaagtccgg 27134431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 30218204 - 30218256
Alignment:
Q  225 tgagtttagttcagttggtatgaacaatgcataaaataagtaaagtccggagt 277  Q
    |||||||| |||||||| |||||||||||||||| ||| | || |||||||||    
T  30218204 tgagtttaattcagttgatatgaacaatgcataatatatgcaatgtccggagt 30218256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 32555252 - 32555292
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    |||||||||||| | |||||||||| |||||||||||||||    
T  32555252 tcgtgagtttagcttagttggtatggacaatgcataaaata 32555292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 35103104 - 35103140
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataa 258  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  35103104 tcgtgagcttagctcagttggtatgaacaatgcataa 35103140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 31886008 - 31885963
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaataagtaa 267  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||    
T  31886008 tcgtgagtttagttcagttggtatgaacaatgcataatatatgtaa 31885963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 23198812 - 23198760
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaataagtaaagtccgg 274  Q
    |||||||||||  |||||||||||||||||||||||||||| | |||||||||    
T  23198812 tcgtgagtttaactcagttggtatgaacaatgcataaaatatgcaaagtccgg 23198760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 222 - 277
Target Start/End: Original strand, 1261173 - 1261228
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaataagtaaagtccggagt 277  Q
    |||||||||||||||||||| ||| ||||| |||||| ||| ||||||||||||||    
T  1261173 tcgtgagtttagttcagttgatataaacaaagcataatatatgtaaagtccggagt 1261228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 7908591 - 7908636
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaataagtaa 267  Q
    |||| |||||||||||||||||||| ||||||||||||||| ||||    
T  7908591 tcgtaagtttagttcagttggtatggacaatgcataaaatatgtaa 7908636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 9690376 - 9690336
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    ||||||||||||||||||||||| |||| ||||||||||||    
T  9690376 tcgtgagtttagttcagttggtaagaacgatgcataaaata 9690336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 274
Target Start/End: Original strand, 20205820 - 20205872
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaataagtaaagtccgg 274  Q
    |||| ||||||| |||||||||||| ||||||||||| ||| |||||||||||    
T  20205820 tcgtaagtttagctcagttggtatggacaatgcataatatatgtaaagtccgg 20205872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 46207758 - 46207798
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    ||||||| |||| ||||||||||||||||||||||||||||    
T  46207758 tcgtgagcttagctcagttggtatgaacaatgcataaaata 46207798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 47589616 - 47589576
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    ||||||| |||| ||||||||||||||||||||||||||||    
T  47589616 tcgtgagcttagctcagttggtatgaacaatgcataaaata 47589576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 262
Target Start/End: Original strand, 13955479 - 13955518
Alignment:
Q  223 cgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    |||||| |||| ||||||||||||||||||||||||||||    
T  13955479 cgtgagcttagctcagttggtatgaacaatgcataaaata 13955518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 259
Target Start/End: Original strand, 20762838 - 20762875
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaa 259  Q
    |||||||||||||||||||| || ||||||||||||||    
T  20762838 tcgtgagtttagttcagttgataggaacaatgcataaa 20762875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 6528868 - 6528828
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    |||||||| ||| |||||||||||| |||||||||||||||    
T  6528868 tcgtgagtctagctcagttggtatggacaatgcataaaata 6528828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 19416512 - 19416552
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    ||||||| |||| |||||||||||| |||||||||||||||    
T  19416512 tcgtgagcttagctcagttggtatggacaatgcataaaata 19416552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 27993092 - 27993052
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    ||||||| |||  ||||||||||||||||||||||||||||    
T  27993092 tcgtgagcttaactcagttggtatgaacaatgcataaaata 27993052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 44558837 - 44558801
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataa 258  Q
    |||||||||||| |||||||||||| |||||||||||    
T  44558837 tcgtgagtttagctcagttggtatggacaatgcataa 44558801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 47677640 - 47677600
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    |||||||||||| |||||||||  |||||||||||||||||    
T  47677640 tcgtgagtttagctcagttggttagaacaatgcataaaata 47677600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 5030203 - 5030239
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataa 258  Q
    |||||||||||||||||||||||||||||||||||||    
T  5030203 tcgtgagtttagttcagttggtatgaacaatgcataa 5030239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 7938722 - 7938758
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataa 258  Q
    ||||||| |||||||||||||||||||||||||||||    
T  7938722 tcgtgagcttagttcagttggtatgaacaatgcataa 7938758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 270
Target Start/End: Original strand, 12408173 - 12408224
Alignment:
Q  219 ttttcgtgagtttagttcagttggtatgaacaatgcataaaataagtaaagt 270  Q
    ||||| |||||||||||||||||||| | ||||||||||| ||| |||||||    
T  12408173 ttttcatgagtttagttcagttggtagggacaatgcataatatatgtaaagt 12408224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 267
Target Start/End: Original strand, 49088744 - 49088795
Alignment:
Q  216 atgttttcgtgagtttagttcagttggtatgaacaatgcataaaataagtaa 267  Q
    |||| ||||||||||||| ||||||| ||| |||||||||||||||| ||||    
T  49088744 atgtcttcgtgagtttagctcagttgatataaacaatgcataaaatatgtaa 49088795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 262
Target Start/End: Original strand, 14827518 - 14827563
Alignment:
Q  217 tgttttcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    |||| ||||||| |||| |||||||||||| |||||||||||||||    
T  14827518 tgttctcgtgagcttagctcagttggtatggacaatgcataaaata 14827563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 32836170 - 32836211
Alignment:
Q  221 ttcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    |||||||| |||| |||||||||||| |||||||||||||||    
T  32836170 ttcgtgagcttagctcagttggtatggacaatgcataaaata 32836211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 51379843 - 51379802
Alignment:
Q  221 ttcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    ||||||||||||  ||||||| ||||||||||||||||||||    
T  51379843 ttcgtgagtttacctcagttgatatgaacaatgcataaaata 51379802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 2496553 - 2496589
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataa 258  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  2496553 tcgtgagcttagttcagttgctatgaacaatgcataa 2496589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 19126731 - 19126695
Alignment:
Q  231 tagttcagttggtatgaacaatgcataaaataagtaa 267  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  19126731 tagttcagttggtatggacaatgcataaaatatgtaa 19126695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 21506821 - 21506781
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    ||||||| |||| |||||||||||| |||||||||||||||    
T  21506821 tcgtgagcttagctcagttggtatggacaatgcataaaata 21506781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 22722400 - 22722440
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    ||||||| |||| |||||| |||||||||||||||||||||    
T  22722400 tcgtgagcttagctcagttagtatgaacaatgcataaaata 22722440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 25340987 - 25340947
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    ||||||| |||| |||||||||||| |||||||||||||||    
T  25340987 tcgtgagcttagctcagttggtatggacaatgcataaaata 25340947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 28244167 - 28244127
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    ||||||| |||  ||||||||||||||||||||||||||||    
T  28244167 tcgtgagcttaactcagttggtatgaacaatgcataaaata 28244127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 258
Target Start/End: Original strand, 41493909 - 41493937
Alignment:
Q  230 ttagttcagttggtatgaacaatgcataa 258  Q
    |||||||||||||||||||||||||||||    
T  41493909 ttagttcagttggtatgaacaatgcataa 41493937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 43345070 - 43345034
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataa 258  Q
    |||||||||||| |||||||||||||||||| |||||    
T  43345070 tcgtgagtttagctcagttggtatgaacaatacataa 43345034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 43490480 - 43490444
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataa 258  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  43490480 tcgtgagcttagctcagttggtatgaacaatgcataa 43490444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 44579634 - 44579674
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    ||||||| |||| |||||||||||| |||||||||||||||    
T  44579634 tcgtgagcttagctcagttggtatggacaatgcataaaata 44579674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 262
Target Start/End: Original strand, 52575953 - 52575985
Alignment:
Q  230 ttagttcagttggtatgaacaatgcataaaata 262  Q
    |||| ||||||||||||||||||||||||||||    
T  52575953 ttagctcagttggtatgaacaatgcataaaata 52575985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 222 - 277
Target Start/End: Complemental strand, 50380899 - 50380844
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaataagtaaagtccggagt 277  Q
    ||||||| ||| ||||||||||||||||||||||||| ||| |||| |||||||||    
T  50380899 tcgtgagcttaattcagttggtatgaacaatgcataatatatgtaaggtccggagt 50380844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 9913897 - 9913937
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    ||||||| |||| ||||||||||||||||||||||||||||    
T  9913897 tcgtgagcttagctcagttggtatgaacaatgcataaaata 9913937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 10401459 - 10401419
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    ||||||| |||||||||||||||||||||||||||| ||||    
T  10401459 tcgtgagcttagttcagttggtatgaacaatgcatacaata 10401419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 13556753 - 13556713
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    ||||||||||||||||||||||| |||| ||||||||||||    
T  13556753 tcgtgagtttagttcagttggtaagaacgatgcataaaata 13556713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 262
Target Start/End: Original strand, 30305984 - 30306016
Alignment:
Q  230 ttagttcagttggtatgaacaatgcataaaata 262  Q
    |||||||||||||||||||||||||||||||||    
T  30305984 ttagttcagttggtatgaacaatgcataaaata 30306016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 35287570 - 35287530
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    ||||||| |||| ||||||||||||||||||||||||||||    
T  35287570 tcgtgagcttagctcagttggtatgaacaatgcataaaata 35287530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 277
Target Start/End: Complemental strand, 14577570 - 14577515
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaataagtaaagtccggagt 277  Q
    |||||||||||| |||||||||| | ||||||||||| ||| | ||||||||||||    
T  14577570 tcgtgagtttagctcagttggtaaggacaatgcataatatatgcaaagtccggagt 14577515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 274
Target Start/End: Original strand, 10497251 - 10497309
Alignment:
Q  216 atgttttcgtgagtttagttcagttggtatgaacaatgcataaaataagtaaagtccgg 274  Q
    |||| |||||||| |||| ||| |||||||| ||||||||||||||| | |||||||||    
T  10497251 atgtcttcgtgagcttagctcaattggtatggacaatgcataaaatatgcaaagtccgg 10497309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 262
Target Start/End: Complemental strand, 29681518 - 29681480
Alignment:
Q  224 gtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  29681518 gtgagcttagttcagttggtatggacaatgcataaaata 29681480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 272
Target Start/End: Original strand, 36059034 - 36059076
Alignment:
Q  230 ttagttcagttggtatgaacaatgcataaaataagtaaagtcc 272  Q
    |||| ||||||||||||||||||||||||||||  ||||||||    
T  36059034 ttagctcagttggtatgaacaatgcataaaatacataaagtcc 36059076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 230 - 267
Target Start/End: Original strand, 2448155 - 2448192
Alignment:
Q  230 ttagttcagttggtatgaacaatgcataaaataagtaa 267  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  2448155 ttagttcagttggtatgaacaatacataaaatatgtaa 2448192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 274
Target Start/End: Original strand, 10399250 - 10399303
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataa-aataagtaaagtccgg 274  Q
    ||||||||||| |||| |||||||||||||| ||||| |||| |||||||||||    
T  10399250 tcgtgagtttaattcaattggtatgaacaatacataataatatgtaaagtccgg 10399303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 259
Target Start/End: Original strand, 32871680 - 32871717
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaa 259  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  32871680 tcgtgggtttagttcagttggtatgaacaatacataaa 32871717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 9946425 - 9946465
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    ||||||| |||| |||||||||||| |||||||||||||||    
T  9946425 tcgtgagcttagctcagttggtatggacaatgcataaaata 9946465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 12671811 - 12671771
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    |||||||||||| |||||||||||  |||||||||||||||    
T  12671811 tcgtgagtttagctcagttggtatagacaatgcataaaata 12671771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 274
Target Start/End: Original strand, 43722763 - 43722815
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaataagtaaagtccgg 274  Q
    |||||||||||  |||||||||||| ||||||||||| ||| |||| ||||||    
T  43722763 tcgtgagtttaactcagttggtatggacaatgcataatatatgtaaggtccgg 43722815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 262
Target Start/End: Complemental strand, 47309 - 47264
Alignment:
Q  217 tgttttcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    |||||||||||| |||| |||||||||||| |||||||||||||||    
T  47309 tgttttcgtgagcttagctcagttggtatggacaatgcataaaata 47264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 262
Target Start/End: Complemental strand, 16221406 - 16221369
Alignment:
Q  225 tgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  16221406 tgagtttagctcagttggtatgaacaatgcataaaata 16221369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 17736791 - 17736836
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaataagtaa 267  Q
    ||||||| |||| |||||||||||||||||||||||||||| ||||    
T  17736791 tcgtgagcttagctcagttggtatgaacaatgcataaaatatgtaa 17736836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 41672347 - 41672302
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaataagtaa 267  Q
    |||| ||||||||||||||||||| |||||||||||||||| ||||    
T  41672347 tcgttagtttagttcagttggtataaacaatgcataaaatatgtaa 41672302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 261
Target Start/End: Original strand, 42061199 - 42061236
Alignment:
Q  224 gtgagtttagttcagttggtatgaacaatgcataaaat 261  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  42061199 gtgagtttagttcagttggtatgaacaatacataaaat 42061236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 262
Target Start/End: Original strand, 42714432 - 42714477
Alignment:
Q  217 tgttttcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    |||| ||||||| ||||||||||||||||| |||||||||||||||    
T  42714432 tgttctcgtgagcttagttcagttggtatggacaatgcataaaata 42714477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 29133547 - 29133507
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    |||| ||||||| ||||||||||||||||||||||||||||    
T  29133547 tcgtaagtttagctcagttggtatgaacaatgcataaaata 29133507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 19976146 - 19976187
Alignment:
Q  217 tgttttcgtgagtttagttcagttggtatgaacaatgcataa 258  Q
    |||| |||||||||||| |||||||||||| |||||||||||    
T  19976146 tgttctcgtgagtttagctcagttggtatggacaatgcataa 19976187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 20517020 - 20517065
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaataagtaa 267  Q
    |||||||||||| |||||||||| ||||||||||||| ||| ||||    
T  20517020 tcgtgagtttagctcagttggtaagaacaatgcataatatatgtaa 20517065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 32957606 - 32957561
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaataagtaa 267  Q
    |||||||||||| || ||||||||||||||||||||| ||| ||||    
T  32957606 tcgtgagtttagctcggttggtatgaacaatgcataatatatgtaa 32957561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 230 - 267
Target Start/End: Complemental strand, 35404610 - 35404573
Alignment:
Q  230 ttagttcagttggtatgaacaatgcataaaataagtaa 267  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  35404610 ttagttcagttggtatgaacaatgtataaaatatgtaa 35404573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 277
Target Start/End: Complemental strand, 44488071 - 44488018
Alignment:
Q  224 gtgagtttagttcagttggtatgaacaatgcataaaataagtaaagtccggagt 277  Q
    ||||||||||||||||||||| | ||||||||||| ||| |||| || ||||||    
T  44488071 gtgagtttagttcagttggtaaggacaatgcataatatatgtaaggttcggagt 44488018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 6765616 - 6765660
Alignment:
Q  230 ttagttcagttggtatgaacaatgcataaaataagtaaagtccgg 274  Q
    |||| |||||||||||| ||||||||||||||| |||| ||||||    
T  6765616 ttagctcagttggtatggacaatgcataaaatatgtaaggtccgg 6765660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 9517072 - 9517036
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataa 258  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  9517072 tcgtgagattagctcagttggtatgaacaatgcataa 9517036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 34464472 - 34464436
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataa 258  Q
    |||||||||||| |||||||||||| |||||||||||    
T  34464472 tcgtgagtttagctcagttggtatggacaatgcataa 34464436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 40365469 - 40365429
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    ||||||| |||| |||||||||||| |||||||||||||||    
T  40365469 tcgtgagcttagctcagttggtatgtacaatgcataaaata 40365429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 41187520 - 41187468
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaataagtaaagtccgg 274  Q
    ||||||| |||| | |||||||||| ||||||||||||||| | |||||||||    
T  41187520 tcgtgagcttagcttagttggtatggacaatgcataaaatatgcaaagtccgg 41187468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 9111045 - 9111081
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataa 258  Q
    ||||||| |||||||||||||||||||||||||||||    
T  9111045 tcgtgagcttagttcagttggtatgaacaatgcataa 9111081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 258
Target Start/End: Complemental strand, 12700482 - 12700448
Alignment:
Q  224 gtgagtttagttcagttggtatgaacaatgcataa 258  Q
    ||||| |||||||||||||||||||||||||||||    
T  12700482 gtgagcttagttcagttggtatgaacaatgcataa 12700448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 20720849 - 20720792
Alignment:
Q  217 tgttttcgtgagtttagttcagttggtatgaacaatgcataaaataagtaaagtccgg 274  Q
    |||||||||||| |||| ||||||| |||| ||||||||||| ||| |||| ||||||    
T  20720849 tgttttcgtgagcttagctcagttgttatggacaatgcataatatatgtaaggtccgg 20720792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 32193927 - 32193886
Alignment:
Q  217 tgttttcgtgagtttagttcagttggtatgaacaatgcataa 258  Q
    |||| |||||||||||| |||||||||| |||||||||||||    
T  32193927 tgttctcgtgagtttagctcagttggtaagaacaatgcataa 32193886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 4494934 - 4494894
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    ||||||| |||| |||||||||||| |||||||||||||||    
T  4494934 tcgtgagcttagctcagttggtatggacaatgcataaaata 4494894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 9444955 - 9444995
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    ||||||| |||| ||||||||||||||||||| ||||||||    
T  9444955 tcgtgagcttagctcagttggtatgaacaatgtataaaata 9444995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 14350947 - 14350987
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    |||||||||||  ||||||| ||||||||||||||||||||    
T  14350947 tcgtgagtttaactcagttgatatgaacaatgcataaaata 14350987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 21373469 - 21373429
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    |||||||||||| ||| |||||||| |||||||||||||||    
T  21373469 tcgtgagtttagctcaattggtatggacaatgcataaaata 21373429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 26320626 - 26320586
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    ||||||| |||| |||||||||||| |||||||||||||||    
T  26320626 tcgtgagcttagctcagttggtatggacaatgcataaaata 26320586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 33938742 - 33938706
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataa 258  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  33938742 tcgtgagcttagctcagttggtatgaacaatgcataa 33938706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 34828304 - 34828340
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataa 258  Q
    |||||||||||| |||||||||||| |||||||||||    
T  34828304 tcgtgagtttagctcagttggtatggacaatgcataa 34828340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 277
Target Start/End: Original strand, 118817 - 118872
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaataagtaaagtccggagt 277  Q
    ||||||| |||| ||||||||| |||||||||||||||||| |||| ||| |||||    
T  118817 tcgtgagcttagctcagttggtttgaacaatgcataaaatatgtaaggtctggagt 118872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 277
Target Start/End: Original strand, 239805 - 239860
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaataagtaaagtccggagt 277  Q
    |||||||||||| |||||||||| | ||||||||||| ||| | ||||||||||||    
T  239805 tcgtgagtttagctcagttggtaaggacaatgcataatatatgcaaagtccggagt 239860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 28176 - 28140
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataa 258  Q
    |||||||||||| |||||||||||| |||||||||||    
T  28176 tcgtgagtttagctcagttggtatggacaatgcataa 28140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 17730 - 17766
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataa 258  Q
    |||||||||||| |||||||||||| |||||||||||    
T  17730 tcgtgagtttagctcagttggtatggacaatgcataa 17766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 22909 - 22949
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    ||||||| |||||| ||||| ||||||||||||||||||||    
T  22909 tcgtgagcttagtttagttgatatgaacaatgcataaaata 22949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 37533 - 37573
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    ||||||| |||| | ||||||||||||||||||||||||||    
T  37533 tcgtgagcttagctaagttggtatgaacaatgcataaaata 37573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 14249 - 14213
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataa 258  Q
    |||||||||||  ||||||||||||||||||||||||    
T  14249 tcgtgagtttaactcagttggtatgaacaatgcataa 14213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 185261 - 185301
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    ||||||| |||| |||||||||||| |||||||||||||||    
T  185261 tcgtgagcttagctcagttggtatggacaatgcataaaata 185301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 361311 - 361271
Alignment:
Q  222 tcgtgagtttagttcagttggtatgaacaatgcataaaata 262  Q
    ||||||| ||||||||||||||||| | |||||||||||||    
T  361311 tcgtgagcttagttcagttggtatggataatgcataaaata 361271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University