View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5429_low_9 (Length: 223)
Name: NF5429_low_9
Description: NF5429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5429_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 9993986 - 9994170
Alignment:
| Q |
16 |
aatatagtgttttggatttcagaatgtgatcgtggaaacgtcgtgttgtccttgctggtacatcggattcgcaaggtcattgatgaagcgcgcttatgta |
115 |
Q |
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| T |
9993986 |
aatatagtgttttggatttcagaatgtgatcgtggaaacgtcgtgttgtccttgctggtacatcggattcgcaaggtcattgatgaagcgcgcttatgta |
9994085 |
T |
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| Q |
116 |
tggaactttgagatgcacgttcaaagtgaggatatgcaaccatagaaacatatttgagtgatcagaatgcaatccatgaatgaca |
200 |
Q |
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| T |
9994086 |
tggaactttgagatgcacgttcaaagtgaggatatgcaaccatagaaacatatttgagtgatcagaatgcaatccatgaatgaca |
9994170 |
T |
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Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 39623518 - 39623581
Alignment:
| Q |
22 |
gtgttttggatttcagaatgtgatcgtggaaacgtcgtgttgtccttgctggtacatcggattc |
85 |
Q |
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| T |
39623518 |
gtgttttggatttcagaatgtgattgtggaaatgccgtgttgtccttgctggtacatcggattc |
39623581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 41344904 - 41344852
Alignment:
| Q |
112 |
tgtatggaactttgagatgcacgttcaaagtgaggatatgcaaccatagaaac |
164 |
Q |
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| T |
41344904 |
tgtatggaagtttgagaagcatgctcaaagtgaggatatacaaccatacaaac |
41344852 |
T |
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