View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5430-Insertion-2 (Length: 369)
Name: NF5430-Insertion-2
Description: NF5430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5430-Insertion-2 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 8 - 369
Target Start/End: Complemental strand, 49979038 - 49978677
Alignment:
| Q |
8 |
atacatacatacattacagatagctagcgtgtctttatgataacaaaatatcactccattacataccatcttgaaatcgattgatcgttgaaggatgatg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49979038 |
atacatacatacattacagatagctagcgtgtctttatgataacaaaatatcactccattacataccatcttgaaatcgattgatcgttgaaggatgatg |
49978939 |
T |
|
| Q |
108 |
atctggaaaaccttgtccaaccggtgcacctatgcacgtgtaacttgactcacctccacctgccacatattgctgcccattgttactcatcatatgactc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49978938 |
atctggaaaaccttgtccaaccggtgcacctatgcacgtgtaacttgactcacctccacctgccacatattgctgcccattgttactcatcatatgactc |
49978839 |
T |
|
| Q |
208 |
acatgacggtaatcgtgaggaaccaaatgtggagggaaagacataggccttgatggtgaagagtacagatattgttgaacttgagatgttgaggatgatg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49978838 |
acatgacggtaatcgtgaggaaccaaatgtggagggaaagacataggccttgatggtgaagagtacagatattgttgaacttgagatgttgaggatgatg |
49978739 |
T |
|
| Q |
308 |
aacctgcagcagagaaggatgttgggaaactcaatggcattgttgggtgatgatgatgatct |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49978738 |
aacctgcagcagagaaggatgttgggaaactcaatggcattgttgggtgatgatgatgatct |
49978677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 49952122 - 49952178
Alignment:
| Q |
114 |
aaaaccttgtccaaccggtgcacctatgcacgtgtaacttgactcacctccacctgc |
170 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
49952122 |
aaaaccttgtctaaccggtgcacctatgcaagtgtaacttgactcaccaccacctgc |
49952178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University