View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5430-Insertion-3 (Length: 203)
Name: NF5430-Insertion-3
Description: NF5430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5430-Insertion-3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 203
Target Start/End: Original strand, 1536166 - 1536361
Alignment:
| Q |
8 |
ggcaaaatatcttgagagaatcctgcgggtctgcagcatatgacagtagcagaattggaacaatctaatgctagattggctgcctaatgatgttagctag |
107 |
Q |
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| T |
1536166 |
ggcaaaatatcttgagagaatcccgcgggtctgcagcatatgacagtagcagaattggaacaatctaatgctagattggctgcctaatgatgttagctag |
1536265 |
T |
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| Q |
108 |
aggtgcctgaaagagttataagttttgtgtggattgtccttcatggaaagttaacgactaatgaaaggaagagtaagattcatttgagcatcccgt |
203 |
Q |
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| T |
1536266 |
aggtgcctgaaagagttataagttttgtgtggattgtccttcatggaaagttaacgactaatgaaaggaagagtaagattcatttgagcatcccgt |
1536361 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 198
Target Start/End: Original strand, 26413689 - 26413780
Alignment:
| Q |
107 |
gaggtgcctgaaagagttataagttttgtgtggattgtccttcatggaaagttaacgactaatgaaaggaagagtaagattcatttgagcat |
198 |
Q |
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| T |
26413689 |
gaggtgcttgaaagagttagaagttttgtgtggattgtcctttgtgagaagccgatgactaatggaagaaagagtaagatgcatttaagcat |
26413780 |
T |
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