View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5430_high_1 (Length: 417)
Name: NF5430_high_1
Description: NF5430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5430_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 23 - 414
Target Start/End: Complemental strand, 45306182 - 45305794
Alignment:
| Q |
23 |
atataatactgtatgtatgtattttattgagaaagaagatac-ttatatggtattatcggatcgtagaggtgaaaaaagaaagaagtattcgagttgaac |
121 |
Q |
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| T |
45306182 |
atataatactgtatgtatgtattttattgagaaagaagatacattatatggtattatcagatcgtagaggtgaaaaaagaa-gaagtattcgacttgaac |
45306084 |
T |
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| Q |
122 |
cgtacatgcatggagattggacagcaaaatagacaaagaaaagggtgaaagagggagcagttcggattgagaattagtgtgaaaggcacgagacgtaaaa |
221 |
Q |
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| T |
45306083 |
cgtacatgcaaggagattggacagcaaaatagacaaagaaaagggtgaaagagggagcagttcggattgagaattagtgtgaaaggcacgagacgtaaaa |
45305984 |
T |
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| Q |
222 |
gagaacaataaatgagtgatgaggctcatgataaccctcatcatcgtcacgtcgtttttcattctctactcccaataacaaatcaatctcccagaattcc |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45305983 |
gagaacaataaatgagtgatgaggctcatgataaccctcatcatcgtcacgtcgtttttcattctctactcccaataacaaatcaatctcccagaattcc |
45305884 |
T |
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| Q |
322 |
acgctnnnnnnnnnnnnnnnncttaaagcctagtcaacctcatctctatcttttgtcccatattcatccaacaatattataccattctctctc |
414 |
Q |
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| T |
45305883 |
acgct--tctctctctccctccttaaagcctagtcaacctcatctc-atcttttgtcccatattcatccaacaatattataccattctctctc |
45305794 |
T |
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