View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5430_low_1 (Length: 562)

Name: NF5430_low_1
Description: NF5430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5430_low_1
NF5430_low_1
[»] chr3 (26 HSPs)
chr3 (9-544)||(679541-680076)
chr3 (9-545)||(747458-747999)
chr3 (143-455)||(9595049-9595361)
chr3 (399-528)||(2501751-2501880)
chr3 (253-520)||(2659482-2659752)
chr3 (54-455)||(2491317-2491726)
chr3 (169-331)||(9562507-9562672)
chr3 (53-455)||(2474346-2474749)
chr3 (54-321)||(2475887-2476159)
chr3 (268-380)||(9566320-9566432)
chr3 (70-218)||(755292-755445)
chr3 (351-431)||(2635214-2635294)
chr3 (54-218)||(7334931-7335100)
chr3 (54-218)||(9566482-9566651)
chr3 (249-321)||(2630771-2630843)
chr3 (54-318)||(7443554-7443823)
chr3 (54-210)||(7325065-7325226)
chr3 (252-322)||(755176-755246)
chr3 (32-76)||(2634861-2634905)
chr3 (399-528)||(2644687-2644819)
chr3 (476-528)||(7334606-7334658)
chr3 (476-506)||(2474776-2474806)
chr3 (399-461)||(2630909-2630971)
chr3 (249-319)||(2644902-2644972)
chr3 (358-428)||(7324862-7324932)
chr3 (476-536)||(2491753-2491813)


Alignment Details
Target: chr3 (Bit Score: 491; Significance: 0; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 9 - 544
Target Start/End: Complemental strand, 680076 - 679541
Alignment:
Q  9 gacatcatcatccatacggctggaaccataacatctccgccgccacttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatca 108  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  680076 gacatcatcgtccatacggctggaaccataacatctccgccaccacttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatca 679977  T
Q  109 aattaccaacttcgatgcctctgtaagnnnnnnnattctcttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacc 208  Q
    |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679976 aattaccaacttcgatgcctctgtaagtttttttattctcttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacc 679877  T
Q  209 tcatgataacctcttggaacaacttggctgagttagttgagtatgattctccaatcccctcgattttatcaacttctaccgttgttacacatacacaact 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679876 tcatgataacctcttggaacaacttggctgagttagttgagtatgattctccaatcccctcgattttatcaacttctaccgttgttacacatacacaact 679777  T
Q  309 ttaccctcctaatattcttacaatttgaggtaactttgtggacgtaatgtgctcttgcgatggcatcttttgctgcatgctaaaagctggttcttatttg 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  679776 ttaccctcctaatattcttacaatttgaggtaactttgtggacgtaatgtgctcttgcgatggcatcttttgctgaatgctaaaagctggttcttatttg 679677  T
Q  409 ttgtggaatccttccattagaaagtatacgttacttcctcctttggagaatcacatatggacatcactaagctttggatatgatcatttcattgataaag 508  Q
    ||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679676 ttgtggaatccttccgttagaaagtataagttactccctcctttggagaatcacatatggacatcactaagctttggatatgatcatttcattgataaag 679577  T
Q  509 ataaggttgttgttgtttcttcagaaaaagaggttt 544  Q
    ||||||||||||||||||||||||||||||||||||    
T  679576 ataaggttgttgttgtttcttcagaaaaagaggttt 679541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 9 - 545
Target Start/End: Complemental strand, 747999 - 747458
Alignment:
Q  9 gacatcatcatccatacggctggaaccataacatctccgccgccacttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatca 108  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||  |||||||| ||||||||||| |||||||||    
T  747999 gacatcatcgtccatacggctggaaccataacatctccgccgccacttcccactcttccattcgatgttttccctgagtttctcggtaggcttcccatca 747900  T
Q  109 aattac-----caacttcgatgcctctgtaagnnnnnnnattctcttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgcca 203  Q
    ||||||     |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  747899 aattactcgtacaacttcgatgcctctgtaagtttttttattctcttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgcca 747800  T
Q  204 caacctcatgataacctcttggaacaacttggctgagttagttgagtatgattctccaatcccctcgattttatcaacttctaccgttgttacacataca 303  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||| ||||||||||||||||    
T  747799 ccacctcatgataacctcttggaacaacttggctgagttagttgagtatgtttctccaatcccctcggttttatctacttctatcgttgttacacataca 747700  T
Q  304 caactttaccctcctaatattcttacaatttgaggtaactttgtggacgtaatgtgctcttgcgatggcatcttttgctgcatgctaaaagctggttctt 403  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  747699 caactttaccctcctaatactcttacaattcgaggtaactttgtggacgtaatgtgatcttgcgatggcatcttttgctgcatgctaaaagctggttcat 747600  T
Q  404 atttgttgtggaatccttccattagaaagtatacgttacttcctcctttggagaatcacatatggacatcactaagctttggatatgatcatttcattga 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  747599 atttgttgtggaatccttccattagaaagtatacgttacttcctcctttggagaatcacatatggacatcactaagctttggatatgatcatttcattga 747500  T
Q  504 taaagataaggttgttgttgtttcttcagaaaaagaggtttt 545  Q
    |||  ||||||| |||||||||||||||||||||||||||||    
T  747499 taattataaggtcgttgttgtttcttcagaaaaagaggtttt 747458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 143 - 455
Target Start/End: Complemental strand, 9595361 - 9595049
Alignment:
Q  143 attctcttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataacctcttggaacaacttggctgagtt 242  Q
    ||||||||||| ||||||||| ||| |||||||| ||||||||||| ||||| ||||||||| ||||||||||| |||||  ||||||||||||||| ||    
T  9595361 attctcttatttctgatccaaaatttgcaaagaatcaccttcaattgtcaacaaagcgccaccacctcatgatagcctctatgaacaacttggctgattt 9595262  T
Q  243 agttgagtatgattctccaatcccctcgattttatcaacttctaccgttgttacacatacacaactttaccctcctaatattcttacaatttgaggtaac 342  Q
    ||||   |||||||||||||||| |||  |||| || ||||||||| |||||||||| |||||||||||||||||||||| ||| |||| | ||  |||     
T  9595261 agttctatatgattctccaatccactcagttttttctacttctaccattgttacacagacacaactttaccctcctaatactctcacaaatggatctaaa 9595162  T
Q  343 tttgtggacgtaatgtgctcttgcgatggcatcttttgctgcatgctaaaagctggttcttatttgttgtggaatccttccattagaaagtatacgttac 442  Q
    |  ||||||||| ||||||||||||||||||| ||||| ||  | || ||  ||||||||||| | |||||||| |||||||||||||| | || ||||     
T  9595161 tacgtggacgtattgtgctcttgcgatggcattttttgttgttttctcaagcctggttcttatgttttgtggaacccttccattagaaaatttaagttat 9595062  T
Q  443 ttcctcctttgga 455  Q
    | |||||||||||    
T  9595061 tgcctcctttgga 9595049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 399 - 528
Target Start/End: Original strand, 2501751 - 2501880
Alignment:
Q  399 ttcttatttgttgtggaatccttccattagaaagtatacgttacttcctcctttggagaatcacatatggacatcactaagctttggatatgatcatttc 498  Q
    ||||||||| |||||||| |||||||||| ||||| || |||| | ||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  2501751 ttcttatttcttgtggaacccttccattacaaagtttaagttattgcctcctttggagaatcacgaatggacatcactaagctttggatatgatcatttc 2501850  T
Q  499 attgataaagataaggttgttgttgtttct 528  Q
    ||||||||  |||||||  |||||||||||    
T  2501851 attgataattataaggtcattgttgtttct 2501880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 253 - 520
Target Start/End: Complemental strand, 2659752 - 2659482
Alignment:
Q  253 gattctccaatcccctcgattttatcaacttctaccgttgttacacatacacaactttaccctcctaatattcttacaatttgaggtaactttgtggacg 352  Q
    |||||||||||||| || ||||| || |||||||||||||||||||| ||||||||||||  |||||||| ||| |||| | ||  | |||   | |||     
T  2659752 gattctccaatcccttcaattttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaaatggacatcactgcatcgacc 2659653  T
Q  353 taatgt---gctcttgcgatggcatcttttgctgcatgctaaaagctggttcttatttgttgtggaatccttccattagaaagtatacgttacttcctcc 449  Q
    | |||    |||||||||||||||| |||||  | | ||| ||   |||||||||||| || ||||| |||||||||||||||| || |||| | |||||    
T  2659652 tgatgatgagctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttatggaacccttccattagaaagtttaagttattgcctcc 2659553  T
Q  450 tttggagaatcacatatggacatcactaagctttggatatgatcatttcattgataaagataaggttgttg 520  Q
    ||||  |||||||| |||| ||| |||||||||||||||||||||||| ||||||||  ||||||||||||    
T  2659552 tttgcggaatcacaaatggtcattactaagctttggatatgatcattttattgataattataaggttgttg 2659482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 54 - 455
Target Start/End: Original strand, 2491317 - 2491726
Alignment:
Q  54 cttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatcaaattac-----caacttcgatgcctctgtaagnnnnnnnattctc 148  Q
    ||||| |||||||  || |||||||| |||||||||||  ||||| ||||  | |||||||     || ||||||||||| ||||||       |||||     
T  2491317 cttccaactcttccttttgatgtcctgcctgagattctgtgtaggcttccggtgaaattactggtacagcttcgatgcctttgtaagtttttcaattctt 2491416  T
Q  149 ttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataacctcttggaacaacttggctgagttagttga 248  Q
    | ||| ||||||| | ||||||||| ||||| |||||||| ||||| ||||||||| |||||||| |||||||    |||||||||| |||||| ||| |    
T  2491417 taatttctgatcctaaattcgcaaaaaagcatcttcaattgtcaacaaagcgccaccacctcatggtaacctcaaaaaacaacttgggtgagttggttca 2491516  T
Q  249 gtatgattctccaatcccctcgattttatcaacttctaccgttgttacacatacacaactttaccctcctaatattcttacaatttgaggtaactttgtg 348  Q
      ||||||| ||||| |||||| |||| || |||||||||||| ||||||| || |||||||||||||||| || ||| |||| | ||  ||| ||| ||    
T  2491517 tcatgattccccaataccctcgcttttttctacttctaccgttattacacagacccaactttaccctcctactaatctcacaaatggacataaatttatg 2491616  T
Q  349 gacgtaatgtgctcttgcgatggcatcttttgctgc---atgctaaaagctggttcttatttgttgtggaatccttccattagaaagtatacgttacttc 445  Q
       |||| ||||| ||| |||||||||||||| |||    |||| || |  | ||||| |||  ||||||| |||||||||||||||| || |||| | |    
T  2491617 ttggtaaggtgctattgtgatggcatcttttgttgcgtggtgcttaatggcgtttctttttttctgtggaacccttccattagaaagtttaagttattgc 2491716  T
Q  446 ctcctttgga 455  Q
    ||||||||||    
T  2491717 ctcctttgga 2491726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 169 - 331
Target Start/End: Complemental strand, 9562672 - 9562507
Alignment:
Q  169 gcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataacctcttggaacaacttg---gctgagttagttgagtatgattctccaatcc 265  Q
    |||||||||||||||||||| ||||||||||||||| ||||| || |||||||||||||||  | |   | |||||| ||| || ||||||  |||||||    
T  9562672 gcaaagaagcaccttcaattgtcaactaagcgccaccacctcttggtaacctcttggaacatttcgcgtggtgagtttgttcagcatgatttcccaatcc 9562573  T
Q  266 cctcgattttatcaacttctaccgttgttacacatacacaactttaccctcctaatattcttacaa 331  Q
    ||| | |||| || |||||||||| ||||||||| |||||||||||| ||||||||||||| ||||    
T  9562572 ccttggttttttctacttctaccgctgttacacagacacaactttacgctcctaatattctcacaa 9562507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 53 - 455
Target Start/End: Original strand, 2474346 - 2474749
Alignment:
Q  53 acttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatcaaattacc-----aacttcgatgcctctgtaagnnnnnnnattct 147  Q
    |||||||||||||| ||| ||| |||| |||||||||||| ||||| ||||| ||||||||||     | ||||| ||||||||||||       |||||    
T  2474346 acttcccactcttccctttgatctcctgcctgagattctctgtaggcttcccgtcaaattacctgtacagcttcggtgcctctgtaagttctttaattct 2474445  T
Q  148 cttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataacctcttggaacaacttggctgagttagttg 247  Q
     | ||| |  |||| | |||||||||||| ||||||||||||||||  ||||||||| |||||||| |||| ||| | ||| |||| | |||||  |||     
T  2474446 ttaatttccaatcccagattcgcaaagaaacaccttcaattatcaaacaagcgccaccacctcatggtaacatctagcaactacttaggtgagtacgttc 2474545  T
Q  248 agtatgattctccaatcccctcgattttatcaacttctaccgttgttacacatacacaactttaccctcctaatattcttacaatttgaggtaactttgt 347  Q
    |||||||||| ||||| |||||| |||| || |  ||||   |  ||| ||| |||||||||||||||||||||| | | | | || ||  |||||  |     
T  2474546 agtatgattccccaataccctcgcttttttctaagtcta---tcattatacagacacaactttaccctcctaatagtatcaaacttggacataactacgc 2474642  T
Q  348 ggacgtaatgtgctcttgcgatggcatcttttgctgcatgctaaaagctggttcttatttgttgtggaatccttccattagaaagtatacgttacttcct 447  Q
       |||  |||||||||| ||||||||||||||| ||| ||| |||| ||| |||||||| |||||||| ||||||||| |||| | || |||| | |||    
T  2474643 cttcgtgttgtgctcttgtgatggcatcttttgcggcacgctcaaagatggctcttattt-ttgtggaacccttccattggaaaatttaagttattgcct 2474741  T
Q  448 cctttgga 455  Q
    ||||||||    
T  2474742 cctttgga 2474749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 54 - 321
Target Start/End: Original strand, 2475887 - 2476159
Alignment:
Q  54 cttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatcaaattac-----caacttcgatgcctctgtaagnnnnnnnattctc 148  Q
    ||||||||||||| ||| |||||||| |||||||||||   |||||| ||  |||||||||     || ||||| ||||| ||||||       ||||||    
T  2475887 cttcccactcttccctttgatgtcctgcctgagattctgtttaggttacctgtcaaattactcgtacagcttcggtgcctttgtaagtttttcaattctc 2475986  T
Q  149 ttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataacctcttggaacaacttggctgagttagttga 248  Q
    ||||| ||||||| | |||||||||||| ||||||||||| ||||| ||||||||| ||||||||  ||  | | | ||||  |    ||||||||||      
T  2475987 ttatttctgatcctaaattcgcaaagaaacaccttcaattgtcaacaaagcgccaccacctcatgcgaaaatgtcgtaacatatcacgtgagttagttct 2476086  T
Q  249 gtatgattctccaatcccctcgattttatcaacttctaccgttgttacacatacacaactttaccctcctaat 321  Q
    ||||||||| |||||||| ||  | || || ||||| |||||||||||||| |||||||||||||||||||||    
T  2476087 gtatgattcgccaatcccatccgtattttctacttcaaccgttgttacacagacacaactttaccctcctaat 2476159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 268 - 380
Target Start/End: Complemental strand, 9566432 - 9566320
Alignment:
Q  268 tcgattttatcaacttctaccgttgttacacatacacaactttaccctcctaatattcttacaatttgaggtaactttgtggacgtaatgtgctcttgcg 367  Q
    ||||||||||| |||||||| ||| ||||||| ||||||||||||||||| |||| | | | |||| || | |||| ||||||| ||| |||||||||||    
T  9566432 tcgattttatctacttctacggtttttacacagacacaactttaccctcccaatagtatcagaattagacgcaactatgtggacttaacgtgctcttgcg 9566333  T
Q  368 atggcatcttttg 380  Q
    |||||||||||||    
T  9566332 atggcatcttttg 9566320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 70 - 218
Target Start/End: Complemental strand, 755445 - 755292
Alignment:
Q  70 tcgatgtcctccctgagattctcggtaggtttcccatcaaattac-----caacttcgatgcctctgtaagnnnnnnnattctcttattgctgatccaac 164  Q
    |||||||||| |||||||||||  ||||| |||||||||||||||     || || || ||||||||||||       ||||||||||| |||||||||     
T  755445 tcgatgtcctgcctgagattctttgtaggcttcccatcaaattactcggacagctgcggtgcctctgtaagtctttcaattctcttatttctgatccaaa 755346  T
Q  165 attcgcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataac 218  Q
    ||||||||| || || |||||||| ||||| ||||||||| |||||||| ||||    
T  755345 attcgcaaaaaaacatcttcaattgtcaacaaagcgccaccacctcatgttaac 755292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 351 - 431
Target Start/End: Original strand, 2635214 - 2635294
Alignment:
Q  351 cgtaatgtgctcttgcgatggcatcttttgctgcatgctaaaagctggttcttatttgttgtggaatccttccattagaaa 431  Q
    ||||| |||||||||||||||||||||| || |  |||| |||||||||||||||||  ||||||| ||||||||||||||    
T  2635214 cgtaacgtgctcttgcgatggcatctttagcggtgtgctcaaagctggttcttattttctgtggaacccttccattagaaa 2635294  T

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Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 54 - 218
Target Start/End: Complemental strand, 7335100 - 7334931
Alignment:
Q  54 cttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatcaaattac-----caacttcgatgcctctgtaagnnnnnnnattctc 148  Q
    ||||| |||||||  || |||||||| |||||||||||  ||||| ||||  | |||||||     || |||||||| |||||||||       |||||     
T  7335100 cttcctactcttccgtttgatgtcctgcctgagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgtctctgtaagttctttaattctg 7335001  T
Q  149 ttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataac 218  Q
    ||||  ||||||||| |||||||||||||||||||||||| ||||| ||||||||| |||||||| ||||    
T  7335000 ttatctctgatccaaaattcgcaaagaagcaccttcaattgtcaacaaagcgccaccacctcatggtaac 7334931  T

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Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 54 - 218
Target Start/End: Complemental strand, 9566651 - 9566482
Alignment:
Q  54 cttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatcaaattac-----caacttcgatgcctctgtaagnnnnnnnattctc 148  Q
    ||||| ||||||| |||||||||| | |||||||||||  ||||| ||||||| |||||||     || ||||| |||||||| |||       ||||||    
T  9566651 cttcctactcttcccttcgatgtcttgcctgagattctttgtaggcttcccatgaaattactcggacagcttcggtgcctctgcaagtccttcaattctc 9566552  T
Q  149 ttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataac 218  Q
    ||||| ||||||||| ||||||||| || || |||||||| ||||| ||||||||  |||||||| ||||    
T  9566551 ttatttctgatccaaaattcgcaaaaaaacatcttcaattgtcaacaaagcgccatcacctcatgttaac 9566482  T

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Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 2630771 - 2630843
Alignment:
Q  249 gtatgattctccaatcccctcgattttatcaacttctaccgttgttacacatacacaactttaccctcctaat 321  Q
    |||||||||||||||||| ||| |||| || ||||| ||| ||||| |||| |||||||||||||||||||||    
T  2630771 gtatgattctccaatcccttcgcttttttctacttcaaccattgttgcacaaacacaactttaccctcctaat 2630843  T

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Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 54 - 318
Target Start/End: Complemental strand, 7443823 - 7443554
Alignment:
Q  54 cttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatcaaattac-----caacttcgatgcctctgtaagnnnnnnnattctc 148  Q
    ||||||||||||| ||||||| ||||||||||||||||| | ||| ||||  | |||||||     |||||||| ||||||||||||       |||||     
T  7443823 cttcccactcttcccttcgatctcctccctgagattctctgcaggcttcctgtgaaattactcatacaacttcggtgcctctgtaagttcttcaattctt 7443724  T
Q  149 ttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataacctcttggaacaacttggctgagttagttga 248  Q
    | ||| ||||||| |  ||||| ||||||||| ||||||| ||| | ||||  |||  ||||||| |||||||| ||||||||     ||| || |||      
T  7443723 taatttctgatcccaatttcgccaagaagcactttcaattttcagccaagcatcaccgcctcatggtaacctctaggaacaacagacatgattttgtttt 7443624  T
Q  249 gtatgattctccaatcccctcgattttatcaacttctaccgttgttacacatacacaactttaccctcct 318  Q
      |||||||||||||||| ||| | || || ||||||||   ||||||||| ||||||||| ||||||||    
T  7443623 acatgattctccaatcccatcggtgttttctacttctacgtctgttacacaaacacaacttgaccctcct 7443554  T

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Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 210
Target Start/End: Complemental strand, 7325226 - 7325065
Alignment:
Q  54 cttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatcaaattac-----caacttcgatgcctctgtaagnnnnnnnattctc 148  Q
    ||||| |||||||  ||||||||| | |||||||||||| | ||| ||||  | |||||||     || ||||| ||||||||||||       |||||     
T  7325226 cttccaactcttcctttcgatgtcttacctgagattctctgcaggcttcctgtgaaattactcatacagcttcggtgcctctgtaagttcttcaattctt 7325127  T
Q  149 ttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctc 210  Q
    | ||| ||||||| || ||||||||||| || |||||||||||||||||||||||| |||||    
T  7325126 taatttctgatcccactttcgcaaagaaacatcttcaattatcaactaagcgccaccacctc 7325065  T

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Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 322
Target Start/End: Complemental strand, 755246 - 755176
Alignment:
Q  252 tgattctccaatcccctcgattttatcaacttctaccgttgttacacatacacaactttaccctcctaata 322  Q
    |||||| |||||||| || ||||| || |||||||| ||| ||||||| ||||||||||||||||| ||||    
T  755246 tgattccccaatcccatccattttttctacttctactgtttttacacagacacaactttaccctcccaata 755176  T

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Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 2634861 - 2634905
Alignment:
Q  32 aaccataacatctccgccgccacttcccactcttctcttcgatgt 76  Q
    ||||||||||||||||||||||||||| |||||||  ||||||||    
T  2634861 aaccataacatctccgccgccacttccgactcttccgttcgatgt 2634905  T

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Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 528
Target Start/End: Complemental strand, 2644819 - 2644687
Alignment:
Q  399 ttcttatttgttgtggaatccttccattagaaagtatacgttacttcctcctttggagaatcaca----tatggacatcactaagctttggatatgatca 494  Q
    ||||||||| |||||||| |||||| ||||||||| || |||| | ||||||||||| | |||||    |||  | | ||||||||||||||||||||||    
T  2644819 ttcttatttcttgtggaacccttccgttagaaagtttaagttattgcctcctttggaaagtcacaattttat-cagaacactaagctttggatatgatca 2644721  T
Q  495 tttcattgataaagataaggttgttgttgtttct 528  Q
     ||| |||||||  |||||||  || ||||||||    
T  2644720 cttcgttgataattataaggtcattattgtttct 2644687  T

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Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 476 - 528
Target Start/End: Complemental strand, 7334658 - 7334606
Alignment:
Q  476 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttct 528  Q
    ||||||| |||||||||||||||||||||||  ||||||| |||| |||||||    
T  7334658 taagcttcggatatgatcatttcattgataattataaggtcgttgctgtttct 7334606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 476 - 506
Target Start/End: Original strand, 2474776 - 2474806
Alignment:
Q  476 taagctttggatatgatcatttcattgataa 506  Q
    |||||||||||||||||||||||||||||||    
T  2474776 taagctttggatatgatcatttcattgataa 2474806  T

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Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 399 - 461
Target Start/End: Original strand, 2630909 - 2630971
Alignment:
Q  399 ttcttatttgttgtggaatccttccattagaaagtatacgttacttcctcctttggagaatca 461  Q
    ||||||||| |||||||| |||||||||||||||| || |||| | ||||| ||||| |||||    
T  2630909 ttcttatttcttgtggaacccttccattagaaagtttaagttattgcctccattggaaaatca 2630971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 319
Target Start/End: Complemental strand, 2644972 - 2644902
Alignment:
Q  249 gtatgattctccaatcccctcgattttatcaacttctaccgttgttacacatacacaactttaccctccta 319  Q
    ||||||||| |||||||| ||   ||| || ||||||||| |||||||||| ||||||||||||| |||||    
T  2644972 gtatgattccccaatcccttcacctttttctacttctaccattgttacacaaacacaactttaccttccta 2644902  T

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Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 428
Target Start/End: Complemental strand, 7324932 - 7324862
Alignment:
Q  358 tgctcttgcgatggcatcttttgctgcatgctaaaagctggttcttatttgttgtggaatccttccattag 428  Q
    |||||||| |||||||| ||||   ||||||| |||| |||||||||||  |||||||| |||||||||||    
T  7324932 tgctcttgtgatggcatttttttgggcatgctcaaagttggttcttattatttgtggaacccttccattag 7324862  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 476 - 536
Target Start/End: Original strand, 2491753 - 2491813
Alignment:
Q  476 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaa 536  Q
    |||||||||| |||||||||||||||||| |  |||||||  ||| ||||||||| |||||    
T  2491753 taagctttgggtatgatcatttcattgatgattataaggtcattggtgtttcttccgaaaa 2491813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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