View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5431_low_1 (Length: 579)

Name: NF5431_low_1
Description: NF5431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5431_low_1
NF5431_low_1
[»] chr1 (15 HSPs)
chr1 (22-277)||(25023227-25023485)
chr1 (416-562)||(25024115-25024273)
chr1 (31-180)||(18628811-18628959)
chr1 (29-180)||(11871483-11871633)
chr1 (31-184)||(15309098-15309249)
chr1 (44-141)||(42241486-42241583)
chr1 (96-180)||(48563423-48563507)
chr1 (31-180)||(26759429-26759577)
chr1 (29-169)||(14393228-14393367)
chr1 (91-183)||(23777095-23777183)
chr1 (51-151)||(16256559-16256658)
chr1 (70-142)||(33323991-33324063)
chr1 (147-223)||(52148947-52149023)
chr1 (278-325)||(25023890-25023937)
chr1 (23-87)||(23170186-23170249)
[»] chr8 (9 HSPs)
chr8 (31-142)||(18003735-18003846)
chr8 (31-200)||(41566330-41566499)
chr8 (39-178)||(13399709-13399848)
chr8 (44-200)||(1029481-1029637)
chr8 (46-142)||(8869766-8869862)
chr8 (44-137)||(14442467-14442560)
chr8 (13-114)||(26450659-26450760)
chr8 (31-142)||(14575229-14575341)
chr8 (43-180)||(625172-625308)
[»] chr2 (10 HSPs)
chr2 (31-221)||(14694838-14695029)
chr2 (96-191)||(39711496-39711590)
chr2 (31-190)||(4724501-4724660)
chr2 (45-169)||(3388293-3388416)
chr2 (23-82)||(19182321-19182381)
chr2 (14-67)||(16740103-16740156)
chr2 (31-113)||(38002145-38002228)
chr2 (57-180)||(9848167-9848288)
chr2 (124-180)||(12419362-12419418)
chr2 (124-180)||(12431422-12431478)
[»] chr7 (8 HSPs)
chr7 (31-187)||(10623507-10623662)
chr7 (31-180)||(28033744-28033893)
chr7 (96-180)||(28002811-28002893)
chr7 (51-135)||(2620684-2620768)
chr7 (31-169)||(5907083-5907219)
chr7 (124-221)||(16994606-16994703)
chr7 (23-87)||(28301883-28301946)
chr7 (92-141)||(20118165-20118214)
[»] chr4 (12 HSPs)
chr4 (44-180)||(44311590-44311724)
chr4 (23-180)||(38011383-38011541)
chr4 (23-180)||(18402613-18402769)
chr4 (31-140)||(32338357-32338466)
chr4 (31-158)||(41421302-41421430)
chr4 (103-199)||(20650141-20650237)
chr4 (31-142)||(44206842-44206953)
chr4 (92-180)||(41839645-41839731)
chr4 (31-135)||(21081664-21081767)
chr4 (124-180)||(35260066-35260122)
chr4 (96-186)||(29847730-29847819)
chr4 (120-180)||(27433333-27433393)
[»] chr6 (5 HSPs)
chr6 (31-200)||(31946330-31946499)
chr6 (79-199)||(9535175-9535295)
chr6 (39-114)||(29333912-29333986)
chr6 (23-142)||(6257426-6257546)
chr6 (31-76)||(28553935-28553980)
[»] chr5 (6 HSPs)
chr5 (44-188)||(19932276-19932419)
chr5 (52-132)||(4950306-4950386)
chr5 (31-88)||(18274231-18274288)
chr5 (31-88)||(18864159-18864215)
chr5 (31-142)||(2770823-2770934)
chr5 (44-141)||(24351809-24351905)
[»] scaffold0003 (1 HSPs)
scaffold0003 (31-180)||(353080-353229)
[»] chr3 (10 HSPs)
chr3 (120-180)||(35740006-35740064)
chr3 (119-180)||(44558497-44558558)
chr3 (172-223)||(5450425-5450476)
chr3 (31-141)||(28421310-28421421)
chr3 (121-202)||(994327-994408)
chr3 (119-180)||(17766018-17766078)
chr3 (119-180)||(19067338-19067398)
chr3 (29-81)||(27080535-27080585)
chr3 (31-88)||(51537430-51537485)
chr3 (120-200)||(1020183-1020263)
[»] scaffold0042 (1 HSPs)
scaffold0042 (31-67)||(31248-31284)


Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 22 - 277
Target Start/End: Original strand, 25023227 - 25023485
Alignment:
Q  22 cacgggtgtgaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggta 121  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25023227 cacgggtgtgaaaccacgttccaaaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaatatggta 25023326  T
Q  122 tcaaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcgaacatgaagtactagagtgtaagtagacatgatgccttgaaa 221  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  25023327 tcaaaatccaagtgccaacaactcactgaacaaagcaacaagcataaaggctctttcgaacatgaagtaccagagtgtaagtatacatgatgccttgaaa 25023426  T
Q  222 cccataaacagatctgaaacatctgagagtc---gaagtcagaccaccaaacaccacat 277  Q
     | ||| ||||||||| ||||||||||||||   |||||||||||||||||||||||||    
T  25023427 tctatagacagatctggaacatctgagagtcgaagaagtcagaccaccaaacaccacat 25023485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 416 - 562
Target Start/End: Original strand, 25024115 - 25024273
Alignment:
Q  416 agataagatttgttcgaagat----aagaattgtttcatccaatttcaaactcaaattcaccgaaacaattcatc------tataacttattttaaagtc 505  Q
    |||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||    
T  25024115 agataagatttgttcgaagatagataagaattgtttcatccaatttcaaactcaaattcaccgaaacaattcatcttataatataacttattttaaagtc 25024214  T
Q  506 aatcaatt--gatttattgtattatttgttgaaggtaggaaatatgttcatactcgtca 562  Q
    ||| ||||  |||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  25024215 aattaattgagatttattgtattatttgttaaaggtaggaaatatgttcatacttgtca 25024273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 31 - 180
Target Start/End: Original strand, 18628811 - 18628959
Alignment:
Q  31 gaaaccaggttacaaaaaata-tgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatc 129  Q
    ||||||||||||||||||| | |||| ||||||||||| || |||||| |||| || |   |||| |||||| |||||||||||| | |||| |||||||    
T  18628811 gaaaccaggttacaaaaaagaatgaaaagtgaacatctacatagaacatttagagtgtgattatggcgaatggatcgaccgccaacacggtaacaaaatc 18628910  T
Q  130 caagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcga 180  Q
    ||||||||||||| || ||||||||  ||||||||||||| ||||||||||    
T  18628911 caagtgccaacagctccctgaacaa--caacaagcataaaagctctttcga 18628959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 29 - 180
Target Start/End: Complemental strand, 11871633 - 11871483
Alignment:
Q  29 gtgaaaccaggttacaaaaaata-tgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaa 127  Q
    ||||||||| ||||||||||| | |||| ||||||||||||||||||| | || | || ||  |||| |||||| ||||||||| || | |||| |||||    
T  11871633 gtgaaaccatgttacaaaaaagaatgaaaagtgaacatctgcaaagaatagttggagtgtaattatggcgaatggatcgaccgctaacacggtaacaaaa 11871534  T
Q  128 tccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcga 180  Q
    ||||||||||||||  || ||||||||  || |||| ||||| ||||||||||    
T  11871533 tccaagtgccaacaactccctgaacaa--catcaagaataaaagctctttcga 11871483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 184
Target Start/End: Complemental strand, 15309249 - 15309098
Alignment:
Q  31 gaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatcc 130  Q
    ||||||| ||||||||||| || |||||||||| | |||||| |||| |||| ||||| | ||| |||||| |||||||||||| | |||| ||||||||    
T  15309249 gaaaccaagttacaaaaaacataaagagtgaacgtttgcaaaaaacagttagagttta-aaatggcgaatggatcgaccgccaacacggta-caaaatcc 15309152  T
Q  131 aagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcgaacat 184  Q
    ||| |||||||  || ||||| | | || |||| ||| | ||||||||||||||    
T  15309151 aagcgccaacaactccctgaaaacatcagcaagtatagaagctctttcgaacat 15309098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 141
Target Start/End: Complemental strand, 42241583 - 42241486
Alignment:
Q  44 aaaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaaca 141  Q
    |||||||||||| ||||||||||| || |||||| |||| |||||  |||| | ||   |||||||||||| | |||| |||||||||||||||||||    
T  42241583 aaaaaatatgaaaagtgaacatctacatagaacatttagagtttaggtatggcaaaatgatcgaccgccaacacggtaacaaaatccaagtgccaaca 42241486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 180
Target Start/End: Complemental strand, 48563507 - 48563423
Alignment:
Q  96 cgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcga 180  Q
    |||||| ||||| || ||| || |||||||||| ||||||||||||  || ||||||||| ||||||||||||  ||||||||||    
T  48563507 cgaatggatcgatcgtcaacatagtatcaaaattcaagtgccaacaactccctgaacaaaacaacaagcataatagctctttcga 48563423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 180
Target Start/End: Complemental strand, 26759577 - 26759429
Alignment:
Q  31 gaaaccaggttacaaaaaat-atgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatc 129  Q
    |||||||| ||||||||||  ||||| | |||| || |||| |||||  | || ||||| ||||| |||||| |||||||||||| |  ||| |||||||    
T  26759577 gaaaccagattacaaaaaaagatgaataatgaatatttgcagagaactgtaagagtttaaatatggcgaatggatcgaccgccaacacagtaacaaaatc 26759478  T
Q  130 caagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcga 180  Q
    ||||||||||||| || |||  |||  | ||||||||||| ||||||||||    
T  26759477 caagtgccaacagctccctggtcaa--cgacaagcataaaagctctttcga 26759429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 169
Target Start/End: Complemental strand, 14393367 - 14393228
Alignment:
Q  29 gtgaaaccaggttacaaaaaata-tgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaa 127  Q
    ||||||| ||||||||||||| | |||| ||||||||| | ||||||||| |||| || || ||||| | |||| || ||| || || | || | |||||    
T  14393367 gtgaaacaaggttacaaaaaagaatgaaaagtgaacatttacaaagaacagttagagtgtaaatatggcaaatggattgactgcaaacacgggaacaaaa 14393268  T
Q  128 tccaagtgccaacagttcactgaacaaagcaacaagcataaa 169  Q
    |||||| |||||||| || ||||||||  |||||||||||||    
T  14393267 tccaagcgccaacagctccctgaacaa--caacaagcataaa 14393228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 183
Target Start/End: Complemental strand, 23777183 - 23777095
Alignment:
Q  91 tatgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcgaaca 183  Q
    |||| |||||| |||||||||||| | |||| |||||||||||||||||||| || ||||||||  || |||||||||| | |||||||||||    
T  23777183 tatggcgaatggatcgaccgccaacacggta-caaaatccaagtgccaacagctccctgaacaa--cagcaagcataaa-gttctttcgaaca 23777095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 151
Target Start/End: Complemental strand, 16256658 - 16256559
Alignment:
Q  51 atgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaacagttcactga 150  Q
    ||||| |||||||||| ||| ||||||||||| ||||| ||||| |||||| ||||||  |||| | |||  |||||| ||||||||||||| || ||||    
T  16256658 atgaaaagtgaacatcagcagagaacaattagagtttaaatatggcgaatggatcgacaaccaacacggtgacaaaat-caagtgccaacagctccctga 16256560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 142
Target Start/End: Complemental strand, 33324063 - 33323991
Alignment:
Q  70 aaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaacag 142  Q
    ||||||||||||| |||||  |||| |||||| |||||||||||| |  ||| | ||||||||||||||||||    
T  33324063 aaagaacaattagagtttaattatggcgaatggatcgaccgccaacacagtaacgaaatccaagtgccaacag 33323991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 223
Target Start/End: Complemental strand, 52149023 - 52148947
Alignment:
Q  147 ctgaacaaagcaacaagcataaaggctctttcgaacatgaagtactagagtgtaagtagacatgatgccttgaaacc 223  Q
    |||||||||||| |||||| ||| |||||||||| ||| || ||| ||||||||  |||||| |||| |||||||||    
T  52149023 ctgaacaaagcagcaagcaaaaaagctctttcgagcatcaaataccagagtgtagctagacaagatgacttgaaacc 52148947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 325
Target Start/End: Original strand, 25023890 - 25023937
Alignment:
Q  278 cacacaaccaagaaccaagaggaatagagacattggtggtgtggaggg 325  Q
    ||||| ||||| |||||||||||| |||||| ||||||||||||||||    
T  25023890 cacacgaccaataaccaagaggaagagagacgttggtggtgtggaggg 25023937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 23170249 - 23170186
Alignment:
Q  23 acgggtgtgaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggttt 87  Q
    ||||||| |||| || ||||||||||||||||| | |||| || ||| |||||||||||||||||    
T  23170249 acgggtgcgaaatcaagttacaaaaaatatgaaaaatgaatat-tgcgaagaacaattagggttt 23170186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 31 - 142
Target Start/End: Complemental strand, 18003846 - 18003735
Alignment:
Q  31 gaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatcc 130  Q
    ||||||| ||||||||||||||||| ||||||| |||||| ||||||||||| |||||  |||||| ||||||||||||||||| | |||| ||||||||    
T  18003846 gaaaccaagttacaaaaaatatgaaaagtgaacgtctgcatagaacaattagagtttaggtatgacaaatgaatcgaccgccaacacggtaacaaaatcc 18003747  T
Q  131 aagtgccaacag 142  Q
    ||||||||||||    
T  18003746 aagtgccaacag 18003735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 200
Target Start/End: Complemental strand, 41566499 - 41566330
Alignment:
Q  31 gaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatcc 130  Q
    ||||||| ||||||||||||||||  ||| ||| | ||| || |||| |||| ||||| | | ||| |||| |||||||||||| | ||||||||||||     
T  41566499 gaaaccaagttacaaaaaatatgagaagttaacttttgccaataacagttagagtttaaaaacgacaaatggatcgaccgccaacacggtatcaaaatct 41566400  T
Q  131 aagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcgaacatgaagtactagagtgta 200  Q
    ||||| |||||| || ||| ||||  ||||||||||||  |||||||||| ||| || ||| ||||||||    
T  41566399 aagtggcaacagctccctgcacaagacaacaagcataacagctctttcgagcattaaataccagagtgta 41566330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 39 - 178
Target Start/End: Original strand, 13399709 - 13399848
Alignment:
Q  39 gttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgcca 138  Q
    |||||||||||||||| || ||||| ||||||||||| | |||||||||  ||||| |||||| || ||||||||| |  | |||| |||||||||| ||    
T  13399709 gttacaaaaaatatgatgaatgaacgtctgcaaagaaaagttagggttttaatatggcgaatggattgaccgccaacactgaatcagaatccaagtgtca 13399808  T
Q  139 acagttcactgaacaaagcaacaagcataaaggctctttc 178  Q
    || | || |||||||||||| |||||  ||| ||||||||    
T  13399809 accgctctctgaacaaagcagcaagctaaaaagctctttc 13399848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 44 - 200
Target Start/End: Original strand, 1029481 - 1029637
Alignment:
Q  44 aaaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaacagt 143  Q
    |||||||||||  ||| ||| | ||| || |||| |||| ||||| | | | |||||| |||||||||||| ||||||||||||| ||||||||||||      
T  1029481 aaaaaatatgagaagtaaacctttgccaataacacttagagtttaaaaacgtcgaatggatcgaccgccaacatggtatcaaaattcaagtgccaacaac 1029580  T
Q  144 tcactgaacaaagcaacaagcataaaggctctttcgaacatgaagtactagagtgta 200  Q
    || ||| ||||| ||  ||||||||  |||||||||| ||| || ||| ||||||||    
T  1029581 tccctgcacaaaacagtaagcataatagctctttcgagcatcaaataccagagtgta 1029637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 142
Target Start/End: Original strand, 8869766 - 8869862
Alignment:
Q  46 aaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaacag 142  Q
    |||| ||||| ||||||||| ||  |||||||||||||||||| || ||  ||||| |||||| | ||| || ||||||||||||||||| ||||||    
T  8869766 aaaaaatgaaaagtgaacatttgtgaagaacaattagggtttaaatctggtgaatggatcgactgtcaacatagtatcaaaatccaagtgtcaacag 8869862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 137
Target Start/End: Original strand, 14442467 - 14442560
Alignment:
Q  44 aaaaaatatgaagagtgaacatctgcaaag-aacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgcc 137  Q
    ||||| |||||| |||||| || ||||||| |||||||| |||||| | |||||||||| || ||||||||| | |||| |||||||||||||||    
T  14442467 aaaaagtatgaaaagtgaatat-tgcaaaggaacaattaaggtttaaagatgacgaatggattgaccgccaacacggtaacaaaatccaagtgcc 14442560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 26450659 - 26450760
Alignment:
Q  13 gaacctgtgcacgggtgtgaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgcc 112  Q
    ||||||| | ||||| | ||||||  ||||||||||| ||||||||  |||| ||| ||||||| ||| ||||||| || ||||||||| || |||||||    
T  26450659 gaacctgcgtacgggcgcgaaacccagttacaaaaaagatgaagagcaaacaactgtaaagaacgattggggtttaaatttgacgaatggattgaccgcc 26450758  T
Q  113 aa 114  Q
    ||    
T  26450759 aa 26450760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 142
Target Start/End: Original strand, 14575229 - 14575341
Alignment:
Q  31 gaaaccaggttacaaaaaata-tgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatc 129  Q
    |||||||| |||||||||| | |||| || |||||||| || ||||||| ||  || ||  ||||||||||| |||||||||||| | || | ||| |||    
T  14575229 gaaaccagattacaaaaaaaaatgaaaagggaacatcttcatagaacaactaaagtgtagttatgacgaatggatcgaccgccaacacggcaacaacatc 14575328  T
Q  130 caagtgccaacag 142  Q
    |||||||||||||    
T  14575329 caagtgccaacag 14575341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 180
Target Start/End: Original strand, 625172 - 625308
Alignment:
Q  43 caaaaaatatgaagagtgaacatctgcaaa-gaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaaca 141  Q
    ||||||||||||| | ||||||| |||||| ||||| ||| |||||| | ||| | |||| || |||||||||  |||||  ||||||||||| ||||||    
T  625172 caaaaaatatgaaaaatgaacat-tgcaaaagaacatttaaggtttaaaaatggcaaatggattgaccgccaacgtggtaataaaatccaagt-ccaaca 625269  T
Q  142 gttcactgaacaaagcaacaagcataaaggctctttcga 180  Q
    | ||  |||||| | || |||||||||| ||||||||||    
T  625270 gctccttgaacacaccagcaagcataaaagctctttcga 625308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 31 - 221
Target Start/End: Original strand, 14694838 - 14695029
Alignment:
Q  31 gaaaccaggttacaaaaaa-tatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatc 129  Q
    ||||||||||||||||||| |||||  ||  |||||||   ||||| ||||||||||||  |  | |||||| ||||||||| || |||||||||||||     
T  14694838 gaaaccaggttacaaaaaaatatgacaagctaacatctttgaagaataattagggtttaatttcggcgaatggatcgaccgcaaacatggtatcaaaatt 14694937  T
Q  130 caagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcgaacatgaagtactagagtgtaagtagacatgatgccttgaaa 221  Q
    ||||||||| ||| ||  |||||||||||||||||||||| |||||||||| |||||| ||| |||||||| ||||||| ||  ||||||||    
T  14694938 caagtgccatcagctccatgaacaaagcaacaagcataaaagctctttcgagcatgaattaccagagtgtaggtagacaagacaccttgaaa 14695029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 96 - 191
Target Start/End: Original strand, 39711496 - 39711590
Alignment:
Q  96 cgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcgaacatgaagtac 191  Q
    |||||| || ||||||||| | |||| |||||||||||||||||||| || |||||||||||| ||||||||||  ||||||| | ||||||||||    
T  39711496 cgaatggatagaccgccaacacggtaacaaaatccaagtgccaacagctctctgaacaaagcagcaagcataaa-actctttcaagcatgaagtac 39711590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 190
Target Start/End: Complemental strand, 4724660 - 4724501
Alignment:
Q  31 gaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatcc 130  Q
    ||||||| ||||||||||||||||   || ||||||||| ||||||||||| ||||||  |  |||||||| || |||||| ||    ||| |||| | |    
T  4724660 gaaaccaagttacaaaaaatatgagaggtaaacatctgccaagaacaattaaggtttaagttcgacgaatggattgaccgctaactcagtaacaaagttc 4724561  T
Q  131 aagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcgaacatgaagta 190  Q
    ||||| ||||| |||  ||| ||||||| |||||||||| |||||||||| ||| |||||    
T  4724560 aagtgtcaacaattccatgatcaaagcagcaagcataaaagctctttcgagcattaagta 4724501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 169
Target Start/End: Complemental strand, 3388416 - 3388293
Alignment:
Q  45 aaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaacagtt 144  Q
    ||||||||||| ||||||||| ||| || |||| |||||||||| ||  | |||||| ||| |||||||| |||  |||||||||||||||||||  | |    
T  3388416 aaaaatatgaaaagtgaacat-tgccaaaaacagttagggtttaaattcggcgaatggatcaaccgccaacatgacatcaaaatccaagtgccaattgct 3388318  T
Q  145 cactgaacaaagcaacaagcataaa 169  Q
    |  |||| |||||| ||||||||||    
T  3388317 ctatgaataaagcagcaagcataaa 3388293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 19182381 - 19182321
Alignment:
Q  23 acgggtgtgaaaccaggttacaaaaaa-tatgaagagtgaacatctgcaaagaacaattag 82  Q
    ||||||| ||||||| ||||||||||| ||||||||||||||||||||| ||| |||||||    
T  19182381 acgggtgcgaaaccaagttacaaaaaagtatgaagagtgaacatctgcagagaccaattag 19182321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 16740103 - 16740156
Alignment:
Q  14 aacctgtgcacgggtgtgaaaccaggttacaaaaaatatgaagagtgaacatct 67  Q
    ||||| |||||||||| |||||||  |||||||||||||||||||| |||||||    
T  16740103 aacctatgcacgggtgcgaaaccaaattacaaaaaatatgaagagtaaacatct 16740156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 113
Target Start/End: Complemental strand, 38002228 - 38002145
Alignment:
Q  31 gaaaccaggttacaaaaaa-tatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgcca 113  Q
    ||||||| ||||||||||| |||||| ||||||||||| || ||||  ||||| ||||| | ||| |||||| |||||||||||    
T  38002228 gaaaccaagttacaaaaaaatatgaaaagtgaacatctacatagaatcattagagtttaaaaatggcgaatggatcgaccgcca 38002145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 9848288 - 9848167
Alignment:
Q  57 agtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaacagttcactgaacaaag 156  Q
    |||||||||||||| ||| ||| ||  || ||  ||||||||||| ||||| |||||| | || | ||| |||||||||||||||  || ||||||||      
T  9848288 agtgaacatctgcatagagcaactaaagtgtagttatgacgaatggatcgatcgccaacacggcaacaacatccaagtgccaacaactccctgaacaa-- 9848191  T
Q  157 caacaagcataaaggctctttcga 180  Q
    ||||||| ||||| || |||||||    
T  9848190 caacaagtataaacgccctttcga 9848167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 124 - 180
Target Start/End: Original strand, 12419362 - 12419418
Alignment:
Q  124 aaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcga 180  Q
    ||||||||||||||| ||| || |||||  ||||| |||||||||| ||||||||||    
T  12419362 aaaatccaagtgccatcagctccctgaatcaagcagcaagcataaaagctctttcga 12419418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 124 - 180
Target Start/End: Original strand, 12431422 - 12431478
Alignment:
Q  124 aaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcga 180  Q
    ||||||||||||||| ||| || |||||  ||||| |||||||||| ||||||||||    
T  12431422 aaaatccaagtgccatcagctccctgaatcaagcagcaagcataaaagctctttcga 12431478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 31 - 187
Target Start/End: Complemental strand, 10623662 - 10623507
Alignment:
Q  31 gaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatcc 130  Q
    |||||||| |||||||||||||||| | ||||||| || |||||||||||| ||||||| | || |||||| |||||| ||||| |  || ||||||| |    
T  10623662 gaaaccagattacaaaaaatatgaaaaatgaacatatgtaaagaacaattaaggtttatttttggcgaatggatcgactgccaacacagtgtcaaaatac 10623563  T
Q  131 aagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcgaacatgaa 187  Q
    || ||||||||  || |||||||||||| ||||||| || |||||||||| ||||||    
T  10623562 aattgccaacaactccctgaacaaagcagcaagcatgaa-gctctttcgagcatgaa 10623507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 31 - 180
Target Start/End: Original strand, 28033744 - 28033893
Alignment:
Q  31 gaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatcc 130  Q
    ||||||| |||||||||||||| |  | ||||||| ||||||||| | || || |||| ||||||||||||||||||||||||| | |  | |||||| |    
T  28033744 gaaaccaagttacaaaaaatataataaatgaacatttgcaaagaatatttgggttttaaatatgacgaatgaatcgaccgccaacacgtcaccaaaattc 28033843  T
Q  131 aagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcga 180  Q
    ||||| || ||| || ||||| | || | |||||||||| ||||||||||    
T  28033844 aagtgtcagcagctctctgaaaacagtagcaagcataaaagctctttcga 28033893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 180
Target Start/End: Complemental strand, 28002893 - 28002811
Alignment:
Q  96 cgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcga 180  Q
    |||||| || ||||||||| | |||||||||||| |||||||||  | || |||||||||||| |||||||||| ||||||||||    
T  28002893 cgaatggattgaccgccaacacggtatcaaaatctaagtgccaa--gctccctgaacaaagcagcaagcataaaagctctttcga 28002811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 135
Target Start/End: Complemental strand, 2620768 - 2620684
Alignment:
Q  51 atgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtg 135  Q
    ||||| ||||||| | |||| ||||||||||| | ||| |||||  ||||| |||| |||||||||||||| |||||||||||||    
T  2620768 atgaaaagtgaacgtttgcagagaacaattagagcttaaatatggagaatggatcgtccgccaaaatggtaacaaaatccaagtg 2620684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 169
Target Start/End: Complemental strand, 5907219 - 5907083
Alignment:
Q  31 gaaaccaggttacaaaaaa--tatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaat 128  Q
    |||||||||||||||||||  |||||| |||||| ||||||| | ||   ||||  |||| ||||| | |||||||||||| |||| | |||| ||||||    
T  5907219 gaaaccaggttacaaaaaaagtatgaaaagtgaaaatctgcataaaattgttag--tttaaatatggcaaatgaatcgaccaccaacacggtaacaaaat 5907122  T
Q  129 ccaagtgccaacagttcactgaacaaagcaacaagcataaa 169  Q
    ||||||||||| || || |||| |||  |||||||||||||    
T  5907121 ccaagtgccaatagctccctgatcaa--caacaagcataaa 5907083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 16994703 - 16994606
Alignment:
Q  124 aaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcgaacatgaagtactagagtgtaagtagacatgatgccttgaaa 221  Q
    ||||| ||||||||||||  ||  |||||||||||||||||||||| ||||||| || ||| || ||| |||||||| | ||||| || | |||||||    
T  16994703 aaaatacaagtgccaacaactccatgaacaaagcaacaagcataaaagctcttttgagcatcaaataccagagtgtaggcagacaagacgacttgaaa 16994606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 28301883 - 28301946
Alignment:
Q  23 acgggtgtgaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggttt 87  Q
    ||||| ||||||||| ||||||||||||||||  || |||||| |||||||||||| ||||||||    
T  28301883 acgggagtgaaaccaagttacaaaaaatatgataagggaacat-tgcaaagaacaaatagggttt 28301946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 20118165 - 20118214
Alignment:
Q  92 atgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaaca 141  Q
    |||||||||  |||||||||||| | |||| |||||||||||||||||||    
T  20118165 atgacgaatagatcgaccgccaatacggtaacaaaatccaagtgccaaca 20118214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 44 - 180
Target Start/End: Original strand, 44311590 - 44311724
Alignment:
Q  44 aaaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaacagt 143  Q
    |||||||||||||||||||| |||||||| |||| ||||| |||| | ||| |||||| |||||||||||  | ||||||||||||||||||||| |||     
T  44311590 aaaaaatatgaagagtgaacttctgcaaa-aacagttaggatttaaaaatggcgaatggatcgaccgccagcacggtatcaaaatccaagtgccatcagc 44311688  T
Q  144 tcactgaacaaagcaacaagcataaaggctctttcga 180  Q
    || |||||| ||||| |||||||||  ||||||||||    
T  44311689 tccctgaac-aagcagcaagcataagagctctttcga 44311724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 180
Target Start/End: Original strand, 38011383 - 38011541
Alignment:
Q  23 acgggtgtgaaaccaggttacaaaaaa-tatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggta 121  Q
    ||||| ||||||||| ||||||||||| |||||  ||| ||  ||||  || || ||||| |||||| | | | |||||| |||||||| ||| | ||||    
T  38011383 acgggcgtgaaaccaagttacaaaaaaatatgagaagtaaatctctgtcaataataattaaggtttaaaaaaggcgaatggatcgaccgtcaacacggta 38011482  T
Q  122 tcaaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcga 180  Q
     |||||||||||||||||||| || |||||| ||||| |||||||||| ||||||||||    
T  38011483 acaaaatccaagtgccaacagctccctgaactaagcagcaagcataaaagctctttcga 38011541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 23 - 180
Target Start/End: Original strand, 18402613 - 18402769
Alignment:
Q  23 acgggtgtgaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtat 122  Q
    ||||||| ||||||   |||||| ||||||||  ||||||||| || |||||||||||| ||||||  |  |||||||| |||||||||||| |   |||    
T  18402613 acgggtgcgaaacctaattacaagaaatatgacaagtgaacatatgaaaagaacaattaaggtttaatttcgacgaatggatcgaccgccaacacaatat 18402712  T
Q  123 caaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcga 180  Q
    |||| ||| |||| |||||  || |||||||||||| |||||||||| ||||||||||    
T  18402713 caaactcctagtgacaacaactccctgaacaaagcagcaagcataaa-gctctttcga 18402769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 32338466 - 32338357
Alignment:
Q  31 gaaaccaggttacaaaaaatatgaagagtgaacatctgcaaa-gaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatc 129  Q
    ||||||| ||||||||||||||||| ||||||||| |||||| ||||| |||  || || | ||| |||||| || ||||||||| |||||| |||||||    
T  32338466 gaaaccaagttacaaaaaatatgaaaagtgaacat-tgcaaaagaacagttaaagtataaaaatggcgaatggattgaccgccaacatggtaacaaaatc 32338368  T
Q  130 caagtgccaac 140  Q
    |||||||||||    
T  32338367 caagtgccaac 32338357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 31 - 158
Target Start/End: Original strand, 41421302 - 41421430
Alignment:
Q  31 gaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggttt-atatatgacgaatgaatcgaccgccaaaatggtatcaaaatc 129  Q
    ||||||| ||||||| ||| ||||| ||||||| | || |||||||| |||||| || ||| ||  || ||| |||||||||||| | |||| |||||||    
T  41421302 gaaaccaagttacaacaaagatgaaaagtgaacgtatgtaaagaacagttagggattcatacatagcgtatggatcgaccgccaacacggtaacaaaatc 41421401  T
Q  130 caagtgccaacagttcactgaacaaagca 158  Q
    || |||||||||| || ||||||||||||    
T  41421402 cacgtgccaacagctccctgaacaaagca 41421430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 199
Target Start/End: Complemental strand, 20650237 - 20650141
Alignment:
Q  103 atcgaccgccaaaatggtatcaaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcgaacatgaagtactagagtgt 199  Q
    |||||| ||||| | |||| |||||||||||||||||||| || |||| ||||||| ||||| |||  |||||||||| |||  ||||| |||||||    
T  20650237 atcgactgccaacacggtaacaaaatccaagtgccaacagctccctgagcaaagcagcaagcgtaagagctctttcgagcatatagtaccagagtgt 20650141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 142
Target Start/End: Original strand, 44206842 - 44206953
Alignment:
Q  31 gaaaccaggttacaaaaaa-tatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatc 129  Q
    ||||||||||||||||||| |||||| |||||| |||||   ||||||| ||| |||||   ||| |||||| |||||||||||| | |||| | |||||    
T  44206842 gaaaccaggttacaaaaaagtatgaaaagtgaaaatctgtcgagaacaactagagtttaagaatggcgaatggatcgaccgccaacacggtaac-aaatc 44206940  T
Q  130 caagtgccaacag 142  Q
    |||||||||||||    
T  44206941 caagtgccaacag 44206953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 92 - 180
Target Start/End: Original strand, 41839645 - 41839731
Alignment:
Q  92 atgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcga 180  Q
    |||||||||| |||||||||||| | |||| ||||||||||||| ||| || || |||| |||  ||||||||  ||||||||||||||    
T  41839645 atgacgaatggatcgaccgccaacacggtaacaaaatccaagtgtcaatagctccctgatcaa--caacaagctaaaaggctctttcga 41839731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 135
Target Start/End: Complemental strand, 21081767 - 21081664
Alignment:
Q  31 gaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatcc 130  Q
    ||||||| |||||||||| ||||||||||||| |||| || ||| || |||| || ||  |||| |||||| |||||||||||| | |||| | ||||||    
T  21081767 gaaaccaagttacaaaaagtatgaagagtgaagatctacacagagcagttagagtgtaagtatggcgaatggatcgaccgccaacacggtaac-aaatcc 21081669  T
Q  131 aagtg 135  Q
    |||||    
T  21081668 aagtg 21081664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 180
Target Start/End: Original strand, 35260066 - 35260122
Alignment:
Q  124 aaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcga 180  Q
    ||||| ||||||||||||| |  |||||||||||| |||||||||| ||||||||||    
T  35260066 aaaattcaagtgccaacagctgcctgaacaaagcagcaagcataaaagctctttcga 35260122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 96 - 186
Target Start/End: Original strand, 29847730 - 29847819
Alignment:
Q  96 cgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcgaacatga 186  Q
    |||||| ||||||| |||| | ||||||||| ||||||||||| ||| || ||||||| | || |||||||||| ||| |||||| |||||    
T  29847730 cgaatggatcgaccaccaacacggtatcaaa-tccaagtgccagcagctccctgaacacaccagcaagcataaaagctttttcgagcatga 29847819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 27433393 - 27433333
Alignment:
Q  120 tatcaaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcga 180  Q
    |||||||||||||||||||| |  || ||||||||| |  |||||||||| ||||||||||    
T  27433393 tatcaaaatccaagtgccaaaaactccctgaacaaatccgcaagcataaaagctctttcga 27433333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 31 - 200
Target Start/End: Complemental strand, 31946499 - 31946330
Alignment:
Q  31 gaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatcc 130  Q
    ||||||| ||||||||||||||||  ||| ||| | ||| || ||||||||| |||||   | |||||||| || | ||||||| | |||||||||||||    
T  31946499 gaaaccaagttacaaaaaatatgagaagttaacctttgccaataacaattagagtttaagaacgacgaatggattgcccgccaacacggtatcaaaatcc 31946400  T
Q  131 aagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcgaacatgaagtactagagtgta 200  Q
    |||||||||||| || ||| ||||  ||||||||||||  |||||||||| ||| || ||| ||||||||    
T  31946399 aagtgccaacagctccctgcacaagacaacaagcataacagctctttcgagcatcaaataccagagtgta 31946330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 79 - 199
Target Start/End: Complemental strand, 9535295 - 9535175
Alignment:
Q  79 ttagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttc 178  Q
    |||||||||| || |||||||||||||||| ||||| ||||| ||||||| |   | ||||||| || || ||||||||| |||| ||||| | ||||||    
T  9535295 ttagggtttaaatctgacgaatgaatcgactgccaacatggtttcaaaattcgcattccaacagctccctaaacaaagcagcaagtataaaagatctttc 9535196  T
Q  179 gaacatgaagtactagagtgt 199  Q
    ||  ||||||||| |||||||    
T  9535195 gagtatgaagtaccagagtgt 9535175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 29333986 - 29333912
Alignment:
Q  39 gttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaa 114  Q
    ||||||||||||||||||||||||||||||| ||||| | |||  ||||| |  ||||||||| ||||||||||||    
T  29333986 gttacaaaaaatatgaagagtgaacatctgcgaagaatagtta-agtttaaaactgacgaatggatcgaccgccaa 29333912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 142
Target Start/End: Complemental strand, 6257546 - 6257426
Alignment:
Q  23 acgggtgtgaaaccaggttacaaaa-aatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggta 121  Q
    ||||||| ||||||| ||||||||| |||||||| |||||| || || | ||||||  ||| ||||||| |||  || || ||||| | |||| | ||||    
T  6257546 acgggtgcgaaaccaagttacaaaataatatgaaaagtgaatatatgaatagaacatctagagtttataaatggtgagtggatcgatcaccaacacggta 6257447  T
Q  122 tcaaaatccaagtgccaacag 142  Q
    |||||||||||||| ||||||    
T  6257446 tcaaaatccaagtgtcaacag 6257426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 28553935 - 28553980
Alignment:
Q  31 gaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaac 76  Q
    |||||||  |||||||||| |||||||||||||| |||||||||||    
T  28553935 gaaaccatattacaaaaaagatgaagagtgaacaactgcaaagaac 28553980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 188
Target Start/End: Original strand, 19932276 - 19932419
Alignment:
Q  44 aaaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatat-gacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaacag 142  Q
    ||||||| |||| | ||||||| ||| |||||||||||||||||| |  | || ||||| |||||||||||| | ||||| ||| |||||||||||||||    
T  19932276 aaaaaatgtgaaaaatgaacat-tgcgaagaacaattagggtttaaaattcgatgaatggatcgaccgccaacacggtatgaaa-tccaagtgccaacag 19932373  T
Q  143 ttcactgaacaaagcaacaagcataaaggctctttcgaacatgaag 188  Q
     || |||||||| ||| |||||||||| |||||||||| |||||||    
T  19932374 ctccctgaacaatgcagcaagcataaaagctctttcgagcatgaag 19932419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 52 - 132
Target Start/End: Complemental strand, 4950386 - 4950306
Alignment:
Q  52 tgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatccaa 132  Q
    |||||| ||||||||||| |||||||||||||||||| ||||| | ||||| ||||||| ||| | |||||||||||||||    
T  4950386 tgaagaatgaacatctgccaagaacaattagggtttaaatatggcaaatgattcgaccgtcaacaaggtatcaaaatccaa 4950306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 18274288 - 18274231
Alignment:
Q  31 gaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggttta 88  Q
    ||||| ||||||||||| ||||||| ||||||||||||| ||||||||||||||||||    
T  18274288 gaaacaaggttacaaaacatatgaaaagtgaacatctgcgaagaacaattagggttta 18274231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 18864215 - 18864159
Alignment:
Q  31 gaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggttta 88  Q
    |||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  18864215 gaaaccaatttacaaaaaatatgaagagtgaacat-tgcaaagaacaattagggttta 18864159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 142
Target Start/End: Original strand, 2770823 - 2770934
Alignment:
Q  31 gaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatcc 130  Q
    ||||||| ||||||||||||||||  ||| ||||| ||| || |||| |||| ||||| | | ||| |||| || ||||||||| | |||||||||||||    
T  2770823 gaaaccaagttacaaaaaatatgagaagttaacatttgccaataacagttagagtttaaaaacgacaaatggattgaccgccaacacggtatcaaaatcc 2770922  T
Q  131 aagtgccaacag 142  Q
    ||||| ||||||    
T  2770923 aagtgtcaacag 2770934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 141
Target Start/End: Complemental strand, 24351905 - 24351809
Alignment:
Q  44 aaaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaaca 141  Q
    |||||||||||||| | |||||||||||  |||| |||||||||| ||||||  |||| ||||||  |||| | | ||||||||||||||||||||||    
T  24351905 aaaaaatatgaaga-taaacatctgcaataaacacttagggtttaaatatgataaatggatcgacaaccaatacgttatcaaaatccaagtgccaaca 24351809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 31 - 180
Target Start/End: Original strand, 353080 - 353229
Alignment:
Q  31 gaaaccaggttacaaaaaatatgaagagtgaacatctgcaaa-gaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatc 129  Q
    ||||||| ||||||||||||||||| |||||| || |||||| ||||| ||| ||| || | ||| |||||| || |||||| || |||||| |||||||    
T  353080 gaaaccaagttacaaaaaatatgaaaagtgaatat-tgcaaaagaacagttaaggtatagaaatggcgaatggattgaccgctaacatggtaacaaaatc 353178  T
Q  130 caagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcga 180  Q
    ||||||||||| | || ||||| | | || |||||||| | ||||||||||    
T  353179 caagtgccaaccgctctctgaatacaccagcaagcatacaagctctttcga 353229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 35740006 - 35740064
Alignment:
Q  120 tatcaaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcga 180  Q
    ||||||||||||||||||||  | || ||||||||||||||||||||||| ||||||||||    
T  35740006 tatcaaaatccaagtgccaa--gctccctgaacaaagcaacaagcataaaagctctttcga 35740064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 44558497 - 44558558
Alignment:
Q  119 gtatcaaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcga 180  Q
    |||||||||||||||||||| ||| ||  |||||| |||| |||||||||| ||||||||||    
T  44558497 gtatcaaaatccaagtgccagcagctccgtgaacacagcagcaagcataaaagctctttcga 44558558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 223
Target Start/End: Original strand, 5450425 - 5450476
Alignment:
Q  172 ctctttcgaacatgaagtactagagtgtaagtagacatgatgccttgaaacc 223  Q
    ||||||||| |||||||||| |||||||| | || |||||||||||||||||    
T  5450425 ctctttcgagcatgaagtaccagagtgtaggcagccatgatgccttgaaacc 5450476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 141
Target Start/End: Complemental strand, 28421421 - 28421310
Alignment:
Q  31 gaaaccaggttacaaaaaa-tatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatc 129  Q
    |||||||| |||||||||| |||||| |||||| |||| || | ||||  ||| ||||| |||||  ||||| |||||||| ||| |  |||||||||||    
T  28421421 gaaaccagattacaaaaaagtatgaaaagtgaaaatctacagataacagatagagtttaaatatggtgaatggatcgaccgtcaacactgtatcaaaatc 28421322  T
Q  130 caagtgccaaca 141  Q
    ||||| ||||||    
T  28421321 caagtaccaaca 28421310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 202
Target Start/End: Complemental strand, 994408 - 994327
Alignment:
Q  121 atcaaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcgaacatgaagtactagagtgtaag 202  Q
    ||||||||||||||| |||||  || || |||||| || |||| ||| | | |||||||| |||| ||||||||||||||||    
T  994408 atcaaaatccaagtggcaacaactccctaaacaaaacagcaagtatagaagttctttcgagcatggagtactagagtgtaag 994327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 17766018 - 17766078
Alignment:
Q  119 gtatcaaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcga 180  Q
    |||||||||||||||||||||||| || | |||  ||||| |||||||||| ||||||||||    
T  17766018 gtatcaaaatccaagtgccaacagctcccagaa-taagcagcaagcataaaagctctttcga 17766078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 19067338 - 19067398
Alignment:
Q  119 gtatcaaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcga 180  Q
    |||||||||||||||||||||||| || | |||  ||||| |||||||||| ||||||||||    
T  19067338 gtatcaaaatccaagtgccaacagctcccagaa-taagcagcaagcataaaagctctttcga 19067398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 27080535 - 27080585
Alignment:
Q  29 gtgaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaatta 81  Q
    |||||||||||||| |||||||  ||| ||||||||||||| |||||||||||    
T  27080535 gtgaaaccaggttaaaaaaaat--gaaaagtgaacatctgcgaagaacaatta 27080585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 51537430 - 51537485
Alignment:
Q  31 gaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggttta 88  Q
    ||||||||||||| ||||||||||| ||||||||| ||| ||||||| ||||||||||    
T  51537430 gaaaccaggttac-aaaaatatgaaaagtgaacat-tgcgaagaacagttagggttta 51537485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 120 - 200
Target Start/End: Complemental strand, 1020263 - 1020183
Alignment:
Q  120 tatcaaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcgaacatgaagtactagagtgta 200  Q
    |||||||||||| |||  || || || || |||||| ||||||||||||| |||||||||  | ||||| |||||||||||    
T  1020263 tatcaaaatccatgtgtgaatagctccctaaacaaatcaacaagcataaaagctctttcgtgcttgaagaactagagtgta 1020183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 31284 - 31248
Alignment:
Q  31 gaaaccaggttacaaaaaatatgaagagtgaacatct 67  Q
    |||||||| |||||||||||||||||||||| |||||    
T  31284 gaaaccagattacaaaaaatatgaagagtgagcatct 31248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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