View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5431_low_2 (Length: 486)
Name: NF5431_low_2
Description: NF5431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5431_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Complemental strand, 46352580 - 46352115
Alignment:
| Q |
1 |
tggaagcaacatggttgctgacctgaaaatttaaaattaaaagcaagcaagccccgttnnnnnnntaaacccataaagatttcttttgcacagtgtgcag |
100 |
Q |
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| T |
46352580 |
tggaagcaacatggttgctgacctgaaaatttaaaattaaaagcaagcaagccccgttaaaaaaataaacccataaagattccttttgcacagtg--cag |
46352483 |
T |
|
| Q |
101 |
ggcattagtgtttagtaaatcacataccgtaagaagaggcttgcctttgggtctttccagcaatgcagtgtgtagtttttccaatccatacacctgttat |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46352482 |
ggcattagtgtttggtaaatcacataccgtaagaagaggcttgcctttgggtctttccagcaatgcagtgtgtagtttttccaatccatacacctgttat |
46352383 |
T |
|
| Q |
201 |
tcccgtacatatagcattcagatcaaataagacaattgtttgatacatttagttgtattttacatttctttataaataaagccttaaacttttataccaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46352382 |
tcccgtacatatagcattcagatcaaataagacaattgtttgatacatttagttgtattttacatttctttataaataaagccttaaacttttataccaa |
46352283 |
T |
|
| Q |
301 |
cgttcataagaaactcacaaatatcagataaatgcctgcannnnnnnnnnnnnnnnnnnnnnnggtttgtagacaaagtggcaaagcgccacaaacacac |
400 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||| ||||||||||||||||| |
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| T |
46352282 |
cgttcataagaaactcacaaatataagataaatgcctgcattttatttttattttttatttttggtttgtagtcaaagtggc-aagcgccacaaacacac |
46352184 |
T |
|
| Q |
401 |
aaatgcaaggtcccgtgtttgaacacataaggtgttaagcctagtaatatcggcattgacgattcaact |
469 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46352183 |
aaatgcaaggtcccgtgtttgaacacataaggtgttaagcctagtaatatcggcattgacgattcaact |
46352115 |
T |
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