View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5431_low_4 (Length: 375)
Name: NF5431_low_4
Description: NF5431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5431_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 42063073 - 42063439
Alignment:
| Q |
1 |
tggcttagctttaggatctacagctttgacgctgcacctttgtccaagaaccatttcaactccccttcaggtgaaaccaatgcagcaggaagcttttcag |
100 |
Q |
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| T |
42063073 |
tggcttagcttcaggatctacagctttgacgcagcacctttgtccaagaaccatttcaactccccttcaggtgaaaccaatgcagcaggaagcttttcag |
42063172 |
T |
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| Q |
101 |
atgtttcagatccgcgtagtgcagagtgaactgcatccgctttaccggtaccagtcaccacaagagcaatgtaagcagaggaattgatcacgggaaaggt |
200 |
Q |
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| T |
42063173 |
atgtttcagatccgcgtagtgcagagtgaactgcatccgctttgccggtaccagtcaccacaagagcaatgtaagcagaggaattgatcacgggaaaggt |
42063272 |
T |
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| Q |
201 |
aaatgttattctctctgggggtggttttggcgagtcgttaattgaggtgacccattttttattctcatggacaagagggtgacctgggaacagagaagct |
300 |
Q |
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| T |
42063273 |
aaatgttattctctctgggggtggttttggcgagtcgttaattgaggtaacccattttttattctcatggacaagagggtgacctgggaacagagaagct |
42063372 |
T |
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| Q |
301 |
acatgcccatcaggacccatgccaagcaacatgagatcaaattttggaaatccactggctgatgatg |
367 |
Q |
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| T |
42063373 |
acatgcccatcaggacccatgccaagcaacatgagatcaaattttggaaatccactggctgatgatg |
42063439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 364
Target Start/End: Original strand, 9514335 - 9514516
Alignment:
| Q |
183 |
attgatcacgggaaaggtaaatgttattctctctgggggtggttttggcgagtcgttaattgaggtgacccattttttattctcatggacaagagggtga |
282 |
Q |
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| T |
9514335 |
attgatcactggaaaagtgaaagtaattctctctgatggtggttttggtgagtcagtgaggaaagtaacccatttctgatcctcttggagaagagcatga |
9514434 |
T |
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| Q |
283 |
cctgggaacagagaagctacatgcccatcaggacccatgccaagcaacatgagatcaaattttggaaatccactggctgatg |
364 |
Q |
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| T |
9514435 |
cctgggaataaagatgcaacatgtccatccggacccatacctaggagcatgagatcaaattttggtaatccattggttgatg |
9514516 |
T |
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