View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5432-Insertion-1 (Length: 1017)
Name: NF5432-Insertion-1
Description: NF5432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5432-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 854; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 854; E-Value: 0
Query Start/End: Original strand, 7 - 1009
Target Start/End: Complemental strand, 48697364 - 48696374
Alignment:
| Q |
7 |
aggttggaattggaagaaaccttctgttgttgtatcatcagaagttgcatcattatgctccatgtctgagaattcatctgagtaatcagaactatcgcaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48697364 |
aggttggaattggaagaaaccttctgttgttgtatcatcagaagttgcatcattatgctccatgtctgagaattcatctgagtaatcagaactatcgcaa |
48697265 |
T |
|
| Q |
107 |
gcgatcgagaccttgtatggaagtatgaatgtgaaggtagaaccattttgttctttgctagacactgttaaacgacctcccatcaactcaacctatgcca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48697264 |
gcgatcgagaccttgtatggaagtatgaatgtgaaggtagaaccattttgttctttgctagacactgttaaacgacctcccatcaactcaacctatgcca |
48697165 |
T |
|
| Q |
207 |
agtgcaaataaaattcggcagtttagaaattgaatataacaaatgaaaagtgacattcaccaaaagaaacaggtggatggaaagggagtgagtgtttagt |
306 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||| |
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| T |
48697164 |
agtgcaaataaaattcggcagtttagaaattgaatataacaaatgaaaagtgaca----------------ggtggatggaaaggaagtgtgtgtttagt |
48697081 |
T |
|
| Q |
307 |
gagcagttgataaaattataaatcctagataaaaattattttgaattgaattggttatttaaaatcaagttccgagtttgagatgaattgatctatgttt |
406 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
48697080 |
gagcagttgataaaagtataaatcctagataaaaattattttgaattgaattggttatttaaaatcatgttctgagtttgagatgaattgatctatgttt |
48696981 |
T |
|
| Q |
407 |
gaatgtttttaatctaaaaagaagattggtgcgaaatttagggtaaaaaatttcaactctacgcagaagttacattttatcaatttagtctaattgagat |
506 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48696980 |
gaatgtttttaatctaaaaagaagattggtgcgaaatttagggtaaaaaatttcaactctacgcagaagttacattttatcaatttagtctaattgagat |
48696881 |
T |
|
| Q |
507 |
tttgagacaaaaatatttgtgtcatgataatcaagcacttttattttcattgtgatcatctattataaaataaaatcaattctgtattcatcaccatgta |
606 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48696880 |
tttgagacaaaaatatttgtgtcatgataatcatgcacttttattttcattgtgatcatctattataaaataaaatcaattctgtattcatcaccatgta |
48696781 |
T |
|
| Q |
607 |
accaaat--actctacacaagaaatttaccagttgtttgcatattgctagtcctagccctgtcccaccatactttcgagcgtgatctacactgacttgca |
704 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48696780 |
accaaatacactctacacaagaaatttaccagttgtttgcatattgctagtcctagccctgtcccaccatactttcgagcgtgatctacactgacttgca |
48696681 |
T |
|
| Q |
705 |
tgtaccttttgaataaactatgtattgcattttctgtcacattgtaacatgnnnnnnntattcatttgataagtacattttctgtaagaaagttgaactt |
804 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
48696680 |
tgtaccttttgaataaactatgtattgcattttctgtcacattgtaacatg-aaaaaatattcatttgataagtacattttctgtaagaaagttgaattt |
48696582 |
T |
|
| Q |
805 |
acgaatacaaaatagaactctaaacaaacagatgaatagagattaaggtcaaatatgaagttgactacactacatagtagttatagtagataatacctgg |
904 |
Q |
| |
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| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48696581 |
atgaatacaaaatagaactctaaacaaacagaagaatagagattaaggtcaaatatgaagttgactacactacatagtagttatagtagataatacctgg |
48696482 |
T |
|
| Q |
905 |
tattccaatgcctgtatcatatacgtcacaacctatccacactgttg-ttcatttgagtgatg-tgatcctctgtgtctccgttcatcgagcattca-tc |
1001 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
48696481 |
tattccaatgcctgtatcatatacatcacaacctatccacactgttgtttcatttgagtgatgttgatcctctgtgtctccgttcatcgagcattcactc |
48696382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 48708894 - 48708850
Alignment:
| Q |
244 |
aacaaatgaaaagtgacattcaccaaaagaaacaggtggatggaaa |
289 |
Q |
| |
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||||||||||| |||||||||| ||||||||| ||||||||||||| |
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| T |
48708894 |
aacaaatgaaatgtgacattcaacaaaagaaa-aggtggatggaaa |
48708850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 3e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 636 - 871
Target Start/End: Original strand, 24626801 - 24627034
Alignment:
| Q |
636 |
gttgtttgcatattgctagtcctagccctgtcccaccatactttcgagcgtgatctacactgacttgcatgtaccttttgaataaactatgtattgcatt |
735 |
Q |
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||||||||||||||||||||||||| | |||| | ||| ||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
24626801 |
gttgtttgcatattgctagtcctagacttgtctctccaaacttttgagcgtgatctacaccaacttgcatgtaccttt-gaataaactatgtattgcatt |
24626899 |
T |
|
| Q |
736 |
ttctgtcacattgtaacatgnnnnnnntattcatttgataagtacattttctgtaagaaagttgaacttacgaatacaaaatagaactctaaacaaacag |
835 |
Q |
| |
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|||| ||||| ||||||| ||||||||||||||||||||||| ||||||||||| |||||| |||||||||||| ||||||||| |||||| |
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| T |
24626900 |
ttctacaacattttaacatggaacaaatattcatttgataagtacatttt-tgtaagaaagtcaaacttatgaatacaaaatataactctaaataaacag |
24626998 |
T |
|
| Q |
836 |
atgaatagagattaaggtcaaatatgaagttgacta |
871 |
Q |
| |
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| || || |||||||||||||||||||||||||||| |
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| T |
24626999 |
aagattaaagattaaggtcaaatatgaagttgacta |
24627034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 7e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 116 - 200
Target Start/End: Original strand, 3453587 - 3453671
Alignment:
| Q |
116 |
accttgtatggaagtatgaatgtgaaggtagaaccattttgttctttgctagacactgttaaacgacctcccatcaactcaacct |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||| |||||| ||||| |||||||||| |
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| T |
3453587 |
accttgtatggtagtatgaatgtgaaggtagaaccacaatgttctttgctagtcactgttagacgaccccccattaactcaacct |
3453671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 629 - 741
Target Start/End: Original strand, 3453875 - 3453987
Alignment:
| Q |
629 |
tttaccagttgtttgcatattgctagtcctagccctgtcccaccatactttcgagcgtgatctacactgacttgcatgtaccttttgaataaactatgta |
728 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||| || ||||| |||||||| || ||| |||| ||||||||||||||| | |||||| || ||| |
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| T |
3453875 |
tttaccagttgtttacatattgctagtcctagacctgtgcctccatattttcgagcatggtctgcactaacttgcatgtaccttctaaataaagtaggta |
3453974 |
T |
|
| Q |
729 |
ttgcattttctgt |
741 |
Q |
| |
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| || |||||||| |
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|
| T |
3453975 |
tagccttttctgt |
3453987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 542 - 587
Target Start/End: Original strand, 25690158 - 25690203
Alignment:
| Q |
542 |
cacttttattttcattgtgatcatctattataaaataaaatcaatt |
587 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25690158 |
cacttgtattttcattgtgatcatctattataaaataaaatcaatt |
25690203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 543 - 587
Target Start/End: Complemental strand, 5588699 - 5588656
Alignment:
| Q |
543 |
acttttattttcattgtgatcatctattataaaataaaatcaatt |
587 |
Q |
| |
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|||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
5588699 |
acttgtattttcattgtgatcat-tattataaaataaaatcaatt |
5588656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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