View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5432-Insertion-2 (Length: 949)

Name: NF5432-Insertion-2
Description: NF5432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5432-Insertion-2
NF5432-Insertion-2
[»] chr3 (9 HSPs)
chr3 (8-675)||(35477856-35478526)
chr3 (825-945)||(35477562-35477683)
chr3 (701-776)||(50724373-50724449)
chr3 (701-776)||(50788399-50788475)
chr3 (701-770)||(53467960-53468030)
chr3 (701-776)||(43566809-43566886)
chr3 (738-776)||(13874885-13874923)
chr3 (703-774)||(23820636-23820709)
chr3 (701-776)||(33206762-33206839)
[»] chr1 (5 HSPs)
chr1 (303-389)||(30870587-30870674)
chr1 (701-776)||(4354118-4354195)
chr1 (701-776)||(49251408-49251485)
chr1 (731-776)||(20357465-20357511)
chr1 (731-776)||(20562444-20562490)
[»] chr4 (6 HSPs)
chr4 (298-381)||(11392819-11392903)
chr4 (298-381)||(11402546-11402630)
chr4 (299-397)||(2436199-2436298)
chr4 (714-775)||(26708578-26708641)
chr4 (703-776)||(29269330-29269404)
chr4 (701-776)||(3465588-3465665)
[»] chr5 (6 HSPs)
chr5 (702-774)||(29144149-29144223)
chr5 (701-776)||(22599949-22600025)
chr5 (701-776)||(33800898-33800975)
chr5 (707-776)||(29050805-29050876)
chr5 (701-774)||(33729785-33729860)
chr5 (701-761)||(27025442-27025503)
[»] chr7 (4 HSPs)
chr7 (701-775)||(35368402-35368478)
chr7 (705-776)||(5748950-5749021)
chr7 (701-776)||(27047728-27047805)
chr7 (738-776)||(31694076-31694114)
[»] chr8 (2 HSPs)
chr8 (678-761)||(2376539-2376624)
chr8 (701-776)||(43874990-43875067)
[»] chr2 (6 HSPs)
chr2 (701-776)||(10262744-10262821)
chr2 (738-776)||(42091325-42091364)
chr2 (701-776)||(3179329-3179406)
chr2 (701-776)||(22297465-22297542)
chr2 (701-776)||(30474208-30474285)
chr2 (702-771)||(38530208-38530280)
[»] chr6 (1 HSPs)
chr6 (738-776)||(34792895-34792933)
[»] scaffold0006 (1 HSPs)
scaffold0006 (728-776)||(159019-159068)


Alignment Details
Target: chr3 (Bit Score: 480; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 8 - 675
Target Start/End: Complemental strand, 35478526 - 35477856
Alignment:
Q  8 ttatgtatagccacccaaaattccttttccattggcatatagtgttgtaaaatctttacagacaagagctagactaggatgcaaattcaagccatctagc 107  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35478526 ttatgtatagccacccaaaattccttttccattggcata--gtgttgtaaaatctttacagacaagagctagactaggatgcaagttcaagccatctagc 35478429  T
Q  108 acatatatacgtaacaaccctcatgccaggagaatttcctatttcatgcacatgattatattcgggactcaatatatctgcattattcaaggcaagaatt 207  Q
    ||||||    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35478428 acatat----gtaacaaccctcatgccagaagaatttcctatttcatgcacatgattatattcgggactcaatatatctgcattattcaaggcaagaatt 35478333  T
Q  208 acgaagctaacaacttgcaacatgttcttccttccgcttttgttgccacc-----ttcatcaccattagtagataccatcatataagaaacataggctct 302  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |     |||| ||||||||||||||||||||||||||||||||||||||||    
T  35478332 acgaagctaacaacttccaacatgttcttccttccgcttttgttgccatcccatcttcaccaccattagtagataccatcatataagaaacataggctct 35478233  T
Q  303 tgtttgtttttgcggtgaatgcaagcttaatgtgtgttttctctaaagctacaaaatatacttcttcattttcacgttaaacatgccttgggacacgata 402  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  35478232 tgtttgtttttgcggtgaatgcaaacttaacgtgtgttttctctaaagctacaaagtatacttcttcattttcacgttaaacatgccttgagacacgata 35478133  T
Q  403 agtgaaacaactctatcgcttgctattctaaacnnnnnnntaaccattt-----tttcctaaagtgtcggaagttcccgatttgatttaaatgaaagcat 497  Q
    | |||   |||||||||| | ||||||||||||       | |||||||     ||||||||||||| ||||||||||||||||||||||||||||||||    
T  35478132 aatga---aactctatcgttcgctattctaaacaaaaaaattaccattttttactttcctaaagtgttggaagttcccgatttgatttaaatgaaagcat 35478036  T
Q  498 ctaatagta-caagtaataa-cacttttgactcttctaatttttcttttcaaagtcaataaagattttttatatgaaaagtcaatgagcattatattttc 595  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35478035 ctaatagtaccaagtaataaccacttttgactcttctaatttttcttttcaaagtcaataaagattttttatatgaaaagtcaatgagcattatattttc 35477936  T
Q  596 ttcttctattcattgttcctaagtaataataattcttcatctcctnnnnnnntcgatgaaacttaaacgtgtttgttgat 675  Q
    |||||||||||||||||||||||||||||||||||||||||||||       || |||||||||||||||||||||||||    
T  35477935 ttcttctattcattgttcctaagtaataataattcttcatctcctaaaaaaatctatgaaacttaaacgtgtttgttgat 35477856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 825 - 945
Target Start/End: Complemental strand, 35477683 - 35477562
Alignment:
Q  825 tcttaatatatgaagttgcgacccatgtagttgatgatgaaccgtaagaatagtcagtgtgattaaatgatcgacataacttttattacctgcacatctt 924  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| | ||||||||    
T  35477683 tcttaatatatgaagttgcgacccatgtagttgatgatgaaccgtaagaatagtcggtgtgattaaatgatcgacatagcttttattacttacacatctt 35477584  T
Q  925 gttg-tagtgtatgctccaaag 945  Q
    |||| |||||||||||||||||    
T  35477583 gttgttagtgtatgctccaaag 35477562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 701 - 776
Target Start/End: Complemental strand, 50724449 - 50724373
Alignment:
Q  701 ggtgaataaatggggtgtctgaagttcaaaccc-agcacctgaatataataatgcattgtccaccaactgagttatg 776  Q
    ||||||||| ||||||||| || |||| ||||| | | |||| ||||||||||||||||||||||||||||| ||||    
T  50724449 ggtgaataagtggggtgtccgaggttcgaaccccaacccctgcatataataatgcattgtccaccaactgagctatg 50724373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 701 - 776
Target Start/End: Original strand, 50788399 - 50788475
Alignment:
Q  701 ggtgaataaatggggtgtctgaagttcaaaccc-agcacctgaatataataatgcattgtccaccaactgagttatg 776  Q
    ||||||||| ||||||||| || |||| ||||| | | |||| ||||||||||||||||||||||||||||| ||||    
T  50788399 ggtgaataagtggggtgtccgaggttcgaaccccaacccctgcatataataatgcattgtccaccaactgagctatg 50788475  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 701 - 770
Target Start/End: Complemental strand, 53468030 - 53467960
Alignment:
Q  701 ggtgaataaatggggtgtctgaagttcaaacccagcacctgaatataataatgcattgtcc-accaactga 770  Q
    ||||||||| ||||||||| || |||| ||||| || |||| ||||||||||||||||||| |||||||||    
T  53468030 ggtgaataagtggggtgtccgaggttcgaaccccgcccctgcatataataatgcattgtcctaccaactga 53467960  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 701 - 776
Target Start/End: Original strand, 43566809 - 43566886
Alignment:
Q  701 ggtgaataaatggggtgtctgaagttcaaacccag-cacctgaatataataatgcattgtcc-accaactgagttatg 776  Q
    ||||||||| |||||||||||| |||| ||||| | | |||| ||||||||||||||||||| |||||||||| ||||    
T  43566809 ggtgaataagtggggtgtctgaggttcgaaccccgacccctgcatataataatgcattgtcctaccaactgagctatg 43566886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 738 - 776
Target Start/End: Original strand, 13874885 - 13874923
Alignment:
Q  738 cctgaatataataatgcattgtccaccaactgagttatg 776  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  13874885 cctgcatataataatgcattgtccaccaactgagctatg 13874923  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 703 - 774
Target Start/End: Complemental strand, 23820709 - 23820636
Alignment:
Q  703 tgaataaatggggtgtctgaagttcaaac-ccagcacctgaatataataatgcattgtcc-accaactgagtta 774  Q
    ||||||| |||||||||||  |||| ||| || || |||| ||||||||||||||||||| |||||||||||||    
T  23820709 tgaataagtggggtgtctggggttcgaactccggcccctgcatataataatgcattgtcctaccaactgagtta 23820636  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 701 - 776
Target Start/End: Complemental strand, 33206839 - 33206762
Alignment:
Q  701 ggtgaataaatggggtgtctgaagttcaaaccc-agcacctgaatataataatgcattgtcc-accaactgagttatg 776  Q
    ||||||||| ||||||||| |  |||| ||||| ||| |||| ||||||||||||||||||| |||||||||| ||||    
T  33206839 ggtgaataagtggggtgtccggggttcgaaccccagcccctgcatataataatgcattgtcctaccaactgagctatg 33206762  T

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Target: chr1 (Bit Score: 64; Significance: 2e-27; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 303 - 389
Target Start/End: Complemental strand, 30870674 - 30870587
Alignment:
Q  303 tgtttgtttttgcggtgaatgcaagcttaatgtgtgttttctctaaagctacaaaatata-cttcttcattttcacgttaaacatgcc 389  Q
    |||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  30870674 tgtttgtttttgcggtgaatacaagcttaacgtgcgttttctctaaagctacaaaatatagcttcttcattttcacgttaaatatgcc 30870587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 701 - 776
Target Start/End: Original strand, 4354118 - 4354195
Alignment:
Q  701 ggtgaataaatggggtgtctgaagttcaaacccag-cacctgaatataataatgcattgtcc-accaactgagttatg 776  Q
    ||||||||| ||||||||| ||||||| ||||| | | |||| ||||||||||||||||||| |||||||||| ||||    
T  4354118 ggtgaataagtggggtgtccgaagttcgaaccccggcccctgcatataataatgcattgtcctaccaactgagctatg 4354195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 701 - 776
Target Start/End: Original strand, 49251408 - 49251485
Alignment:
Q  701 ggtgaataaatggggtgtctgaagttcaaacccag-cacctgaatataataatgcattgtcc-accaactgagttatg 776  Q
    ||||||||| |||||||||||  |||| ||||| | | |||| ||||||||||||||||||| |||||||||||||||    
T  49251408 ggtgaataagtggggtgtctggggttcgaaccccgacccctgcatataataatgcattgtcctaccaactgagttatg 49251485  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 731 - 776
Target Start/End: Complemental strand, 20357511 - 20357465
Alignment:
Q  731 cccagcacctgaatataataatgcattgtcc-accaactgagttatg 776  Q
    |||||| |||| ||||||||||||||||||| |||||||||||||||    
T  20357511 cccagcccctgcatataataatgcattgtcctaccaactgagttatg 20357465  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 731 - 776
Target Start/End: Original strand, 20562444 - 20562490
Alignment:
Q  731 cccagcacctgaatataataatgcattgtcc-accaactgagttatg 776  Q
    |||||| |||| ||||||||||||||||||| |||||||||||||||    
T  20562444 cccagcccctgcatataataatgcattgtcctaccaactgagttatg 20562490  T

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Target: chr4 (Bit Score: 53; Significance: 6e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 298 - 381
Target Start/End: Complemental strand, 11392903 - 11392819
Alignment:
Q  298 gctcttgtttgtttttgcggtgaatgcaagcttaatgtgtgttttctctaaagctacaaaatata-cttcttcattttcacgtta 381  Q
    ||||||||||||||||||||||||||||||||||| ||   |||||| |||||||||||||| || |||||||||||||||||||    
T  11392903 gctcttgtttgtttttgcggtgaatgcaagcttaacgtacattttctgtaaagctacaaaatgtagcttcttcattttcacgtta 11392819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 298 - 381
Target Start/End: Complemental strand, 11402630 - 11402546
Alignment:
Q  298 gctcttgtttgtttttgcggtgaatgcaagcttaatgtgtgttttctctaaagctacaaaatata-cttcttcattttcacgtta 381  Q
    ||||||||||||||||||||||||||||||||||| ||   |||||| |||||||||||||| || |||||||||||||||||||    
T  11402630 gctcttgtttgtttttgcggtgaatgcaagcttaacgtacattttctgtaaagctacaaaatgtagcttcttcattttcacgtta 11402546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 299 - 397
Target Start/End: Original strand, 2436199 - 2436298
Alignment:
Q  299 ctcttgtttgtttttgcggtgaatgcaagcttaatgtgtgttttctctaaagctacaaaatata-cttcttcattttcacgttaaacatgccttgggaca 397  Q
    |||||||||| ||||||||||||| |||  |||| |||||||||||||||| ||||||||| || |||||  ||||||| |||||| |||| | ||||||    
T  2436199 ctcttgtttgcttttgcggtgaatacaacattaacgtgtgttttctctaaacctacaaaatgtagcttctatattttcaagttaaatatgcttcgggaca 2436298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 714 - 775
Target Start/End: Original strand, 26708578 - 26708641
Alignment:
Q  714 ggtgtctgaagttcaaacccagcacctgaatataataatgcattgtcc--accaactgagttat 775  Q
    ||||||||| |||| |||||| | |||| |||||||||||||||||||  ||||||||||||||    
T  26708578 ggtgtctgaggttcgaacccaacccctgcatataataatgcattgtccctaccaactgagttat 26708641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 703 - 776
Target Start/End: Original strand, 29269330 - 29269404
Alignment:
Q  703 tgaataaatggggtgtctgaagttcaaa-cccagcacctgaatataataatgcattgtccaccaactgagttatg 776  Q
    ||||||| ||||||||| |  |||| || |||||| |||  ||||||||||||||||||||||||||||| ||||    
T  29269330 tgaataagtggggtgtccggggttcgaatcccagcccctacatataataatgcattgtccaccaactgagctatg 29269404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 701 - 776
Target Start/End: Complemental strand, 3465665 - 3465588
Alignment:
Q  701 ggtgaataaatggggtgtctgaagttcaaac-ccagcacctgaatataataatgcattgtcc-accaactgagttatg 776  Q
    ||||||||| ||||||||| |  |||| ||| || || |||| ||||||||||||||||||| |||||||||||||||    
T  3465665 ggtgaataagtggggtgtccggggttcgaactccggcccctgcatataataatgcattgtcctaccaactgagttatg 3465588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 702 - 774
Target Start/End: Complemental strand, 29144223 - 29144149
Alignment:
Q  702 gtgaataaatggggtgtctgaagttcaaacccag-cacctgaatataataatgcattgtcc-accaactgagtta 774  Q
    |||||||||||||||||||| ||||||||||| | | |||| ||||||||||||||||||| |||||||||||||    
T  29144223 gtgaataaatggggtgtctggagttcaaaccccgacccctgcatataataatgcattgtcctaccaactgagtta 29144149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 701 - 776
Target Start/End: Original strand, 22599949 - 22600025
Alignment:
Q  701 ggtgaataaatggggtgtctgaagttcaaa-cccagcacctgaatataataatgcattgtcc-accaactgagttatg 776  Q
    ||||||||| |||||||||||  ||||||| |||| | |||| ||||||||||||||||||| |||||||||||||||    
T  22599949 ggtgaataagtggggtgtctggggttcaaatcccaac-cctgcatataataatgcattgtcctaccaactgagttatg 22600025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 701 - 776
Target Start/End: Complemental strand, 33800975 - 33800898
Alignment:
Q  701 ggtgaataaatggggtgtctgaagttcaaacccag-cacctgaatataataatgcattgtcc-accaactgagttatg 776  Q
    ||||||||| |||||||||||  |||| ||||| | | |||| ||||||||||||||||||| |||||||||||||||    
T  33800975 ggtgaataagtggggtgtctggggttcgaaccccggcccctgcatataataatgcattgtcctaccaactgagttatg 33800898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 707 - 776
Target Start/End: Complemental strand, 29050876 - 29050805
Alignment:
Q  707 taaatggggtgtctgaagttcaaacccag-cacctgaatataataatgcattgtcc-accaactgagttatg 776  Q
    ||||||||||||| | ||||||||||| | | |||| ||||||||||||||||||| |||||||||| ||||    
T  29050876 taaatggggtgtccggagttcaaaccccggcccctgcatataataatgcattgtcctaccaactgagctatg 29050805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 701 - 774
Target Start/End: Complemental strand, 33729860 - 33729785
Alignment:
Q  701 ggtgaataaatggggtgtctgaagttcaaacccag-cacctgaatataataatgcattgtcc-accaactgagtta 774  Q
    ||||||||| ||||||||||||  ||| ||||| | | |||| ||||||||||||||||||| |||||||||||||    
T  33729860 ggtgaataagtggggtgtctgagattcgaaccccggcccctgcatataataatgcattgtcctaccaactgagtta 33729785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 701 - 761
Target Start/End: Original strand, 27025442 - 27025503
Alignment:
Q  701 ggtgaataaatggggtgtctgaagttcaaacccag-cacctgaatataataatgcattgtcc 761  Q
    ||||||||| |||||||||||  |||| ||||||| | ||||||||||| ||||||||||||    
T  27025442 ggtgaataagtggggtgtctggggttcgaacccaggcccctgaatataacaatgcattgtcc 27025503  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 701 - 775
Target Start/End: Complemental strand, 35368478 - 35368402
Alignment:
Q  701 ggtgaataaatggggtgtctgaagttcaaacc-cagcacctgaatataataatgcattgtcc-accaactgagttat 775  Q
    ||||||||||||||||||| | ||||| |||| |||| ||| |||||||||||||| ||||| ||||||||||||||    
T  35368478 ggtgaataaatggggtgtccggagttcgaaccacagcccctaaatataataatgcaatgtcctaccaactgagttat 35368402  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 705 - 776
Target Start/End: Original strand, 5748950 - 5749021
Alignment:
Q  705 aataaatggggtgtctgaagttcaaacccagcacctgaatataataatgcattgtccaccaactgagttatg 776  Q
    ||||| |||| |||| || |||| |||||||| |||| ||||||||||||||| ||||||||||||| ||||    
T  5748950 aataagtgggatgtccgaggttcgaacccagcccctgtatataataatgcattatccaccaactgagctatg 5749021  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 701 - 776
Target Start/End: Original strand, 27047728 - 27047805
Alignment:
Q  701 ggtgaataaatggggtgtctgaagttc-aaacccagcacctgaatataataatgcattgtcc-accaactgagttatg 776  Q
    ||||||||||||||||||| || |||| || ||| || |||| ||||||||||||||||||| |||||||||| ||||    
T  27047728 ggtgaataaatggggtgtccgaggttcgaaccccggcccctgcatataataatgcattgtcctaccaactgagctatg 27047805  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 738 - 776
Target Start/End: Complemental strand, 31694114 - 31694076
Alignment:
Q  738 cctgaatataataatgcattgtccaccaactgagttatg 776  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  31694114 cctgcatataataatgcattgtccaccaactgagctatg 31694076  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 678 - 761
Target Start/End: Complemental strand, 2376624 - 2376539
Alignment:
Q  678 gtagcctaatggctagagttcac-ggtgaataaatggggtgtctgaagttcaaacccag-cacctgaatataataatgcattgtcc 761  Q
    ||||||||||||||||| ||||| ||||||||| ||| ||||| || |||| ||||| | | |||| |||||||||||||||||||    
T  2376624 gtagcctaatggctagaattcacaggtgaataagtggagtgtccgaggttcgaacccggacccctgcatataataatgcattgtcc 2376539  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 701 - 776
Target Start/End: Original strand, 43874990 - 43875067
Alignment:
Q  701 ggtgaataaatggggtgtctgaagttcaaacc-cagcacctgaatataataatgcattgtcc-accaactgagttatg 776  Q
    ||||||||| |||||||||||  |||| |||| |||| |||  ||||||||||||||||||| | |||||||||||||    
T  43874990 ggtgaataagtggggtgtctggtgttcgaacctcagcccctacatataataatgcattgtcctatcaactgagttatg 43875067  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 701 - 776
Target Start/End: Complemental strand, 10262821 - 10262744
Alignment:
Q  701 ggtgaataaatggggtgtctgaagttcaaacccag-cacctgaatataataatgcattgtcc-accaactgagttatg 776  Q
    ||||||||| |||||||||||  |||| ||||| | | |||| ||||||||||||||||||| |||||||||||||||    
T  10262821 ggtgaataagtggggtgtctggggttcgaaccccgacccctgcatataataatgcattgtcctaccaactgagttatg 10262744  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 738 - 776
Target Start/End: Original strand, 42091325 - 42091364
Alignment:
Q  738 cctgaatataataatgcattgtcc-accaactgagttatg 776  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  42091325 cctgaatataataatgcattgtcctaccaactgagttatg 42091364  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 701 - 776
Target Start/End: Complemental strand, 3179406 - 3179329
Alignment:
Q  701 ggtgaataaatggggtgtctgaagttcaaacc-cagcacctgaatataataatgcattg-tccaccaactgagttatg 776  Q
    ||||||||| |||||||||||| |||| |||| |  | |||| |||||||||||||||| || |||||||||||||||    
T  3179406 ggtgaataagtggggtgtctgaggttcgaacctcgacccctgcatataataatgcattgttctaccaactgagttatg 3179329  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 701 - 776
Target Start/End: Original strand, 22297465 - 22297542
Alignment:
Q  701 ggtgaataaatggggtgtctgaagttcaaaccca-gcacctgaatataataatgcattgtcc-accaactgagttatg 776  Q
    ||||||||||||||||||| |  |||| |||||  || |||| ||||||||||||||||||| |||||||||| ||||    
T  22297465 ggtgaataaatggggtgtccggggttcgaacccctgcccctgcatataataatgcattgtcctaccaactgagctatg 22297542  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 701 - 776
Target Start/End: Original strand, 30474208 - 30474285
Alignment:
Q  701 ggtgaataaatggggtgtctgaagttcaaacc-cagcacctgaatataataatgcattgtcc-accaactgagttatg 776  Q
    ||||||||| |||||||||||  |||| |||| | || |||| ||||||||||||||||||| |||||||||| ||||    
T  30474208 ggtgaataagtggggtgtctggggttcgaacctcggcccctgcatataataatgcattgtcctaccaactgagctatg 30474285  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 702 - 771
Target Start/End: Original strand, 38530208 - 38530280
Alignment:
Q  702 gtgaataaatggggtgtctgaagttcaaaccc--agcacctgaatataataatgcattgtcc-accaactgag 771  Q
    |||||||| ||||||||| | ||||| |||||  ||| |||| ||||||||||||||||||| ||||||||||    
T  38530208 gtgaataagtggggtgtccgcagttcgaaccccaagcccctgtatataataatgcattgtcctaccaactgag 38530280  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 738 - 776
Target Start/End: Original strand, 34792895 - 34792933
Alignment:
Q  738 cctgaatataataatgcattgtccaccaactgagttatg 776  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  34792895 cctgcatataataatgcattgtccaccaactgagctatg 34792933  T

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Target: scaffold0006 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 728 - 776
Target Start/End: Complemental strand, 159068 - 159019
Alignment:
Q  728 aaacccagcacctgaatataataatgcattgtcc-accaactgagttatg 776  Q
    |||||| || |||| ||||||||||||||||||| |||||||||||||||    
T  159068 aaacccggcccctgcatataataatgcattgtcctaccaactgagttatg 159019  T

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