View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5432-Insertion-5 (Length: 677)

Name: NF5432-Insertion-5
Description: NF5432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5432-Insertion-5
NF5432-Insertion-5
[»] chr3 (7 HSPs)
chr3 (8-344)||(48375172-48375516)
chr3 (104-281)||(53319317-53319494)
chr3 (9-241)||(53422448-53422680)
chr3 (8-231)||(26094808-26095031)
chr3 (9-242)||(53430407-53430643)
chr3 (144-301)||(53307199-53307360)
chr3 (286-323)||(26094738-26094775)
[»] chr5 (1 HSPs)
chr5 (345-677)||(10228918-10229258)
[»] chr2 (2 HSPs)
chr2 (345-676)||(12767018-12767357)
chr2 (345-435)||(25291581-25291672)
[»] chr6 (1 HSPs)
chr6 (345-650)||(19080519-19080831)
[»] chr8 (1 HSPs)
chr8 (345-469)||(23608157-23608282)
[»] chr4 (2 HSPs)
chr4 (345-449)||(45741240-45741345)
chr4 (399-450)||(43523910-43523961)
[»] chr1 (1 HSPs)
chr1 (346-449)||(52762486-52762590)


Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 8 - 344
Target Start/End: Original strand, 48375172 - 48375516
Alignment:
Q  8 aatgctcctagtggtgtgaaagttcagctgattccagagaaactacaattcacaaaaagcaataaaaaacagagctaccaagctattttatctactactt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  48375172 aatgctcctagtggtgtgaaagttcagctgattccagagaaactacaattcacaaaaagcaataaaaaacaaagctaccaagctattttctctactactt 48375271  T
Q  108 taacctcgttgaaggaagatctgtttggatccattacatggactaacggtaaatatagtgttcgaagtccttttgtactaactatgtagctaaatggaat 207  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  48375272 taacctcgttgaaggaagatctgtttggatccattacatggagtaacggtaaatatagtgttcgaagtccttttgtactaactatgtagctaaatggaaa 48375371  T
Q  208 gaaacgataaataaatacaagctaagttcttgtagatgcttac----ttatgtgttgtgtatgttatttacccattttaagttttattataattttaatt 303  Q
    |||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48375372 gaaacgataaataaatacaagctaagttcttgtagatgcttacttaattatgtgttgtgtatgttatttacccattttaagttttattataattttaatt 48375471  T
Q  304 tctcaaaatttactttc----tacttgcctttaaaatgagttaag 344  Q
    |||||||||||||||||    ||||||||||||||||||||||||    
T  48375472 tctcaaaatttactttctacgtacttgcctttaaaatgagttaag 48375516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 104 - 281
Target Start/End: Complemental strand, 53319494 - 53319317
Alignment:
Q  104 actttaacctcgttgaaggaagatctgtttggatccattacatggactaacggtaaatatagtgttcgaagtccttttgtactaactatgtagctaaatg 203  Q
    |||||||||||  ||||||||||| ||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||| || || ||||| ||||||    
T  53319494 actttaacctcaatgaaggaagatttgtttggatccattacatggagtaatggtaaatatactgttcgaagtccttttgtattagctgtgtagataaatg 53319395  T
Q  204 gaatgaaacgataaataaatacaagctaagttcttgtagatgcttacttatgtgttgtgtatgttatttacccatttt 281  Q
     || ||||| ||||||||||||||| | ||||||||||||||| |||   | |||||| |||||||||||||| ||||    
T  53319394 aaaagaaacaataaataaatacaagttgagttcttgtagatgcctacaagtatgttgtttatgttatttacccttttt 53319317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 9 - 241
Target Start/End: Complemental strand, 53422680 - 53422448
Alignment:
Q  9 atgctcctagtggtgtgaaagttcagctgattccagagaaactacaattcacaaaaagcaataaaaaacagagctaccaagctattttatc-tactactt 107  Q
    ||||||||||||| |||||||| ||  |||||||||||||||| ||||| |||||||| |  ||||||   |||||||||| |||||| || ||| ||||    
T  53422680 atgctcctagtggggtgaaagtccaattgattccagagaaactccaatttacaaaaagtagcaaaaaaataagctaccaagttattttctcctac-actt 53422582  T
Q  108 taacctcgttgaaggaagatctgtttggatccattacatggactaacggtaaatatagtgttcgaagtccttttgtactaactatgtagctaaatggaat 207  Q
    ||| | || |||| || ||||| |||||||||||||||||||  || | ||||||||||||||||||||||||||||||| ||  ||||||||||| ||     
T  53422581 taatcccgctgaacgatgatctctttggatccattacatggagaaatgataaatatagtgttcgaagtccttttgtactatctccgtagctaaatgaaaa 53422482  T
Q  208 gaaacgataaataaatacaagctaagttcttgta 241  Q
    ||||||||||||||||||||| | || |||||||    
T  53422481 gaaacgataaataaatacaagttgagctcttgta 53422448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 8 - 231
Target Start/End: Complemental strand, 26095031 - 26094808
Alignment:
Q  8 aatgctcctagtggtgtgaaagttcagctgattccagagaaactacaattcacaaaaagcaataaaaaacagagctaccaagctattttatctactactt 107  Q
    |||||||| ||||| |||||||| ||| ||||||| ||||| || ||||| |||||||| |  |||||||| ||||| |||| |||||| ||  ||| ||    
T  26095031 aatgctccgagtggggtgaaagtccagttgattccggagaagcttcaatttacaaaaagaagcaaaaaacaaagctatcaagttattttctcctctaatt 26094932  T
Q  108 taacctcgttgaaggaagatctgtttggatccattacatggactaacggtaaatatagtgttcgaagtccttttgtactaactatgtagctaaatggaat 207  Q
    |||| ||  | ||||||||||| ||||||| |||||| ||||  |  ||||| |||||||||||||||||||||||||||||| |||||||||||| ||     
T  26094931 taacatcactcaaggaagatctatttggattcattacttggagaagtggtaagtatagtgttcgaagtccttttgtactaactgtgtagctaaatgaaaa 26094832  T
Q  208 gaaacgataaataaatacaagcta 231  Q
    ||||| || |||||||||||||||    
T  26094831 gaaacaattaataaatacaagcta 26094808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 9 - 242
Target Start/End: Complemental strand, 53430643 - 53430407
Alignment:
Q  9 atgctcctagtggtgtgaaagttcagctgattccagagaaactacaattcacaaaaagcaataaaaaacagagctaccaagctattttatctactacttt 108  Q
    ||||||||||||| |||||||| ||  |||||||||||||||| ||||| |||||||| |  || | |   |||||||||| ||| || || | |   ||    
T  53430643 atgctcctagtggggtgaaagtccaattgattccagagaaactccaatttacaaaaagtagcaatagaataagctaccaagttatcttctccaat---tt 53430547  T
Q  109 aacctcgttgaaggaagatctgtttggatccattacatggactaacggtaaatatagtgttcgaagtccttttgtact---aactatgtagctaaatgga 205  Q
    ||||||| | ||||||||||| |||||||||||||||||||  || | |||||||||||||||||||||||||||| |   | ||||||| ||||||| |    
T  53430546 aacctcgctaaaggaagatctatttggatccattacatggagaaatgataaatatagtgttcgaagtccttttgtaatatcatctatgtaactaaatgaa 53430447  T
Q  206 atgaaacgata---aataaatacaagctaagttcttgtag 242  Q
    | |||| ||||   |||||||||||||  |||||||||||    
T  53430446 aagaaatgataaataataaatacaagcagagttcttgtag 53430407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 144 - 301
Target Start/End: Complemental strand, 53307360 - 53307199
Alignment:
Q  144 catggactaacggtaaatatagtgttcgaagtccttttgtactaactatgtagctaaatggaatgaaacgataaataaata----caagctaagttcttg 239  Q
    |||||| ||| || ||||||| |||||| |||||||||||| ||||  ||||  |||||| || |||||||||||||||||    |||| | ||||||||    
T  53307360 catggagtaatgggaaatataatgttcggagtccttttgtattaaccgtgtaattaaatgaaaagaaacgataaataaataaatacaagtttagttcttg 53307261  T
Q  240 tagatgcttacttatgtgttgtgtatgttatttacccattttaagttttattataattttaa 301  Q
    || || | | ||  ||||||||||||| | ||||||| | |||| |||||||||||||||||    
T  53307260 taaattcctgctcttgtgttgtgtatgatgtttacccttcttaatttttattataattttaa 53307199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 323
Target Start/End: Complemental strand, 26094775 - 26094738
Alignment:
Q  286 tttattataattttaatttctcaaaatttactttctac 323  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  26094775 tttattgtaattttcatttctcaaaatttactttctac 26094738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 345 - 677
Target Start/End: Complemental strand, 10229258 - 10228918
Alignment:
Q  345 gagtggtgatagatagac-actctatgtggcataccattcttatacgccctatatggcaggggcaattttgtcatttaacaaaaaagaagggatagtgtt 443  Q
    |||||||||||||||||| |||| |||||||||||||| ||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||| | ||    
T  10229258 gagtggtgatagatagaccactccatgtggcataccatccttatacaccccatatggcaggggcaattttgccatttaacaaaaaagaagggataatttt 10229159  T
Q  444 gtccaaaggccaaacaattttgtcaacacattctttcttcttcagacccttctttcttctccctcaccggaac--acacc-gacaccgtcatcagcccgt 540  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||   |||| | ||||||| |||| ||||    
T  10229158 gtccaaaggtcaaacaattttgtcaacacattctttcttcttcagacccttctttcttctccctcatcggaaccaccaccggccaccgtcgtcag-ccgt 10229060  T
Q  541 tttcaacctcaaatctccc--acattgtcg-catcatca-cctctaacttcaccggcaccat-gtcgccgtcagatctaacaacttaagtctgccttcga 635  Q
    |||||||||||||||||||   ||  |||| | |||||| |||| ||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||    
T  10229059 tttcaacctcaaatctccccaccaccgtcgccgtcatcaccctcaaacttcacccgcaccatcgtcgccgtcagatctaacaacttaagtctgtcttcga 10228960  T
Q  636 cccccgtacgtccactgtcgctccccaccacagtcgccgtcg 677  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  10228959 cccccgtacgtccaccgtcgctccccaccacagtcgccgtcg 10228918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 179; Significance: 3e-96; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 345 - 676
Target Start/End: Original strand, 12767018 - 12767357
Alignment:
Q  345 gagtggtgatagatagac-actctatgtggcataccattcttatacgccctatatggcaggggcaattttgtcatttaacaaaa-aagaagggatagtgt 442  Q
    ||||| |||||||||||| |||| |||||||||||||| ||||||| ||| |||||||||||||||||| |||||||||||||| ||||||||||| | |    
T  12767018 gagtgctgatagatagactactccatgtggcataccatccttatacaccccatatggcaggggcaatttagtcatttaacaaaaaaagaagggataattt 12767117  T
Q  443 tgtccaaaggccaaacaattttgtcaacacattctttcttcttcagacccttctttcttctccctcaccggaaca--cacc-gacaccgtcatcagcccg 539  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| | ||||||| | || |||    
T  12767118 tgtccaaaggccaaacaattttgtcaacacattctttcttcttcagacccttctttcttctccctcaccggaacaaccaccggccaccgtcgtaag-ccg 12767216  T
Q  540 ttttcaacctcaaatctccc--acattgtcg-catcatca-cctctaacttcaccggcaccatgtcgccgtcagatctaacaacttaagtctgccttcga 635  Q
    ||||||||||||||||||||   ||  |||| | |||||| |||| ||||||||  |||||| |||||||||||||||||||||||||||| ||||||||    
T  12767217 ttttcaacctcaaatctccccaccaccgtcgccgtcatcaccctcaaacttcacatgcaccacgtcgccgtcagatctaacaacttaagtcagccttcga 12767316  T
Q  636 cccccgtacgtccactgtcgctccccaccacagtcgccgtc 676  Q
    |||  |||||||||| |||||||||||||||||||||||||    
T  12767317 cccttgtacgtccaccgtcgctccccaccacagtcgccgtc 12767357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 345 - 435
Target Start/End: Complemental strand, 25291672 - 25291581
Alignment:
Q  345 gagtggtgatagatagac-actctatgtggcataccattcttatacgccctatatggcaggggcaattttgtcatttaacaaaaaagaaggg 435  Q
    ||||||||||||||| || || | |||||||||||||||||| ||| ||| |||| |||||||||||||||||  || ||||||||||||||    
T  25291672 gagtggtgatagataaaccaccccatgtggcataccattcttgtacaccccatattgcaggggcaattttgtccattcacaaaaaagaaggg 25291581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 176; Significance: 2e-94; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 345 - 650
Target Start/End: Complemental strand, 19080831 - 19080519
Alignment:
Q  345 gagtggtgatagatagac-actctatgtggcataccattcttatacgccctatatggcaggggcaattttgtcatttaacaaaaaagaagggatagtgtt 443  Q
    |||||||||||||||||| |||| |||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| | ||    
T  19080831 gagtggtgatagatagaccactccatgtggcataccatccttatacaccccatatggcaggggcaattttgtcatttaacaaaaaagaagggataatttt 19080732  T
Q  444 gtccaaaggccaaacaattttgtcaacacattctttcttcttcagacccttctttcttctccctcaccggaac--acacc-gacaccgtcatcagcccgt 540  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||| | |||||||  ||| ||||    
T  19080731 gtccaaaggccaaacaattttgtcaacacattctttcttcttcagacccttctttcttctccctcaccggaaccaccaccggccaccgtccccag-ccgt 19080633  T
Q  541 tttcaacctcaaatctccc--acattgtcg-catcatca-cctctaacttcaccggcaccatgtcgccgtcagatctaacaacttaagtctgccttcgac 636  Q
    |||||||||||||||||||   ||  |||| | |||||| |||| |||||||||||||||| |||  ||||||||||||||||||||||||||||| |||    
T  19080632 tttcaacctcaaatctccccaccaccgtcgccgtcatcaccctcaaacttcaccggcaccacgtcatcgtcagatctaacaacttaagtctgcctttgac 19080533  T
Q  637 ccccgtacgtccac 650  Q
    ||||||||||||||    
T  19080532 ccccgtacgtccac 19080519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 345 - 469
Target Start/End: Complemental strand, 23608282 - 23608157
Alignment:
Q  345 gagtggtgatagatagac-actctatgtggcataccattcttatacgccctatatggcaggggcaattttgtcatttaacaaaaaagaagggatagtgtt 443  Q
    |||||||||||||||||| || | |||| |||||||||  || ||| ||| ||||||||||||||| ||||||  ||||||||| |||||||||| | ||    
T  23608282 gagtggtgatagatagaccaccccatgttgcataccatcattgtacacccaatatggcaggggcaactttgtccattaacaaaagagaagggataatttt 23608183  T
Q  444 gtccaaaggccaaacaattttgtcaa 469  Q
    |||||||| |||||||| ||| ||||    
T  23608182 gtccaaagtccaaacaactttttcaa 23608157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 345 - 449
Target Start/End: Complemental strand, 45741345 - 45741240
Alignment:
Q  345 gagtggtgatagatagac-actctatgtggcataccattcttatacgccctatatggcaggggcaattttgtcatttaacaaaaaagaagggatagtgtt 443  Q
    ||||||||||||||| || || | |||||||||||||||||| ||| ||| |||| |||||||||||||||||  || |||||||||||||| || | ||    
T  45741345 gagtggtgatagataaaccaccccatgtggcataccattcttgtacaccccatattgcaggggcaattttgtccattcacaaaaaagaagggttaatttt 45741246  T
Q  444 gtccaa 449  Q
    ||||||    
T  45741245 gtccaa 45741240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 399 - 450
Target Start/End: Original strand, 43523910 - 43523961
Alignment:
Q  399 ggcaggggcaattttgtcatttaacaaaaaagaagggatagtgttgtccaaa 450  Q
    ||||||||||||||||||  ||||||||||| |||||||| | |||||||||    
T  43523910 ggcaggggcaattttgtccattaacaaaaaacaagggataattttgtccaaa 43523961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 52762486 - 52762590
Alignment:
Q  346 agtggtgatagatagac-actctatgtggcataccattcttatacgccctatatggcaggggcaattttgtcatttaacaaaaaagaagggatagtgttg 444  Q
    |||||||||||||| || || | ||||||||| |||||||| ||| ||| |||| | |||||||||||||||  || |||||||||||||| || | |||    
T  52762486 agtggtgatagataaaccaccccatgtggcatgccattcttgtacaccccatattgtaggggcaattttgtccattcacaaaaaagaagggttaattttg 52762585  T
Q  445 tccaa 449  Q
    |||||    
T  52762586 tccaa 52762590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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