View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5432-Insertion-6 (Length: 530)

Name: NF5432-Insertion-6
Description: NF5432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5432-Insertion-6
NF5432-Insertion-6
[»] chr8 (17 HSPs)
chr8 (30-135)||(4924890-4924995)
chr8 (31-130)||(4689094-4689193)
chr8 (28-135)||(4745821-4745928)
chr8 (30-129)||(4889866-4889965)
chr8 (16-134)||(4996385-4996503)
chr8 (31-130)||(4681463-4681562)
chr8 (30-131)||(4715114-4715215)
chr8 (30-135)||(4726261-4726366)
chr8 (31-135)||(4736818-4736922)
chr8 (31-135)||(10446838-10446942)
chr8 (31-133)||(4776464-4776566)
chr8 (36-129)||(10452491-10452584)
chr8 (30-134)||(4703749-4703853)
chr8 (31-131)||(4913400-4913500)
chr8 (33-131)||(21439332-21439430)
chr8 (33-89)||(4875132-4875188)
chr8 (64-127)||(4904415-4904478)
[»] chr7 (1 HSPs)
chr7 (258-326)||(28410728-28410796)
[»] chr1 (1 HSPs)
chr1 (258-337)||(4949006-4949085)
[»] chr2 (1 HSPs)
chr2 (157-209)||(9094878-9094930)


Alignment Details
Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 30 - 135
Target Start/End: Complemental strand, 4924995 - 4924890
Alignment:
Q  30 taagacagagaattcaacccttccaccaatcctgaatgcctatgaggtttataaagtaaaagacttctcacaatcagaaactgaacaagatgatggtaag 129  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| | |||| |||| |||||||| |||||||||||||||||    
T  4924995 taagacagagaattcaacccttccacccatcctcaatgcctatgaggtttataaagtaaaacaattcttacaaccagaaactcaacaagatgatggtaag 4924896  T
Q  130 ctagcc 135  Q
    ||||||    
T  4924895 ctagcc 4924890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 4689094 - 4689193
Alignment:
Q  31 aagacagagaattcaacccttccaccaatcctgaatgcctatgaggtttataaagtaaaagacttctcacaatcagaaactgaacaagatgatggtaagc 130  Q
    ||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||    
T  4689094 aagacggaaaattcaacccttccaccaatcctcaatgcctatgaggtttataaagtaatggacttcccacaatcagaaactgaacaagatgatggtaagc 4689193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 4745821 - 4745928
Alignment:
Q  28 tataagacagagaattcaacccttccaccaatcctgaatgcctatgaggtttataaagtaaaagacttctcacaatcagaaactgaacaagatgatggta 127  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |  ||| |||||||||| ||||||||||| |||||||||||| ||    
T  4745821 tataagacagagaattcaacccttccaccaatcctcaatgcctatgaggtttattagctaagagacttctcaaaatcagaaactcaacaagatgatgata 4745920  T
Q  128 agctagcc 135  Q
    ||||||||    
T  4745921 agctagcc 4745928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 4889965 - 4889866
Alignment:
Q  30 taagacagagaattcaacccttccaccaatcctgaatgcctatgaggtttataaagtaaaagacttctcacaatcagaaactgaacaagatgatggtaag 129  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||| | || ||||||||||||    
T  4889965 taagacagagaattcaacccttccaccaatcctcaatgcctttgagatttataaagtaaaagacttctcacaatcagaaactcatcaggatgatggtaag 4889866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 4996385 - 4996503
Alignment:
Q  16 caaattaccatttataagacagagaattcaacccttccaccaatcctgaatgcctatgaggtttataaagtaaaagacttctcacaatcagaaactgaac 115  Q
    |||||||||||||  ||||||||| |||||||||||||||||||||| ||||||| |||  |||||||||||||| |||||||||||||||||||||| |    
T  4996385 caaattaccatttcaaagacagaggattcaacccttccaccaatcctcaatgcctttgaaatttataaagtaaaaaacttctcacaatcagaaactgatc 4996484  T
Q  116 aagatgatggtaagctagc 134  Q
      |||||||||||||||||    
T  4996485 gggatgatggtaagctagc 4996503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 4681463 - 4681562
Alignment:
Q  31 aagacagagaattcaacccttccaccaatcctgaatgcctatgaggtttataaagtaaaagacttctcacaatcagaaactgaacaagatgatggtaagc 130  Q
    |||||||| ||||||||||||||||| ||||||||||||  ||||||||||||||||||| | |||||||||||||||||| |||| |||||||||||||    
T  4681463 aagacagataattcaacccttccacccatcctgaatgccgttgaggtttataaagtaaaaaatttctcacaatcagaaactcaacaggatgatggtaagc 4681562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 30 - 131
Target Start/End: Original strand, 4715114 - 4715215
Alignment:
Q  30 taagacagagaattcaacccttccaccaatcctgaatgcctatgaggtttataaagtaaaagacttctcacaatcagaaactgaacaagatgatggtaag 129  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||   ||||| ||||  |||||| | || ||||||||||||    
T  4715114 taagacagagaattcaacccttccaccaatcctcaatgcctatgaggtttataaagtaaaacttttctcgcaattggaaactcatcaggatgatggtaag 4715213  T
Q  130 ct 131  Q
    ||    
T  4715214 ct 4715215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 30 - 135
Target Start/End: Original strand, 4726261 - 4726366
Alignment:
Q  30 taagacagagaattcaacccttccaccaatcctgaatgcctatgaggtttataaagtaaaagacttctcacaatcagaaactgaacaagatgatggtaag 129  Q
    ||||||||| || |||||||||||||||||||| ||||||| |||||| |||||| ||||||||||||| || ||||||||| |||| | ||||||||||    
T  4726261 taagacagaaaagtcaacccttccaccaatcctcaatgcctttgaggtatataaactaaaagacttctcgcattcagaaactcaacagggtgatggtaag 4726360  T
Q  130 ctagcc 135  Q
    ||||||    
T  4726361 ctagcc 4726366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 31 - 135
Target Start/End: Original strand, 4736818 - 4736922
Alignment:
Q  31 aagacagagaattcaacccttccaccaatcctgaatgcctatgaggtttataaagtaaaagacttctcacaatcagaaactgaacaagatgatggtaagc 130  Q
    |||| ||| ||||||||||||||||| ||||||||||| | |||||||||||||  || ||||||||||  |||||||||| ||||||||||||||||||    
T  4736818 aagaaagataattcaacccttccacccatcctgaatgcttttgaggtttataaacaaagagacttctcaatatcagaaactcaacaagatgatggtaagc 4736917  T
Q  131 tagcc 135  Q
    |||||    
T  4736918 tagcc 4736922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 31 - 135
Target Start/End: Original strand, 10446838 - 10446942
Alignment:
Q  31 aagacagagaattcaacccttccaccaatcctgaatgcctatgaggtttataaagtaaaagacttctcacaatcagaaactgaacaagatgatggtaagc 130  Q
    |||| ||||||||||||||||||||||||| | ||||||  |||  |||||||||||||||||||||||||  |||||||| ||||||||||||||||||    
T  10446838 aagatagagaattcaacccttccaccaatcgtcaatgccattgaaatttataaagtaaaagacttctcacagccagaaactaaacaagatgatggtaagc 10446937  T
Q  131 tagcc 135  Q
     ||||    
T  10446938 aagcc 10446942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 4776566 - 4776464
Alignment:
Q  31 aagacagagaattcaacccttccaccaatcctgaatgcctatgaggtttataaagtaaaagacttctcacaatcagaaactgaacaagatgatggtaagc 130  Q
    |||||| ||||||||||||||||||| ||||| ||||||| |||| ||||||  | ||||||||||||||||| ||||||| |||| |||||||||||||    
T  4776566 aagacaaagaattcaacccttccacccatcctaaatgcctttgagatttatatggcaaaagacttctcacaattagaaactcaacaggatgatggtaagc 4776467  T
Q  131 tag 133  Q
    |||    
T  4776466 tag 4776464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 36 - 129
Target Start/End: Original strand, 10452491 - 10452584
Alignment:
Q  36 agagaattcaacccttccaccaatcctgaatgcctatgaggtttataaagtaaaagacttctcacaatcagaaactgaacaagatgatggtaag 129  Q
    ||||||||||||||||||||| ||||| ||||||  | |  ||||||||||||||||||||||| || ||||||| ||||||||||||||||||    
T  10452491 agagaattcaacccttccacccatcctcaatgccattaaaatttataaagtaaaagacttctcaaaaccagaaacagaacaagatgatggtaag 10452584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 30 - 134
Target Start/End: Original strand, 4703749 - 4703853
Alignment:
Q  30 taagacagagaattcaacccttccaccaatcctgaatgcctatgaggtttataaagtaaaagacttctcacaatcagaaactgaacaagatgatggtaag 129  Q
    ||||||||| ||||||||||||||||| ||    |||||   |||||||||||||||||||||||||||||| ||||||||| | || ||||||||||||    
T  4703749 taagacagataattcaacccttccacccatagctaatgctattgaggtttataaagtaaaagacttctcacagtcagaaactcatcaggatgatggtaag 4703848  T
Q  130 ctagc 134  Q
    |||||    
T  4703849 ctagc 4703853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 31 - 131
Target Start/End: Complemental strand, 4913500 - 4913400
Alignment:
Q  31 aagacagagaattcaacccttccaccaatcctgaatgcctatgaggtttataaagtaaaagacttctcacaatcagaaactgaacaagatgatggtaagc 130  Q
    |||||| ||||||||||||||||||| ||||| ||||||| |||| |||| |    ||||||||||||||||||||||||| |||| |||||||||||||    
T  4913500 aagacaaagaattcaacccttccacccatcctaaatgcctttgagatttacatgtcaaaagacttctcacaatcagaaactcaacaggatgatggtaagc 4913401  T
Q  131 t 131  Q
    |    
T  4913400 t 4913400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 33 - 131
Target Start/End: Complemental strand, 21439430 - 21439332
Alignment:
Q  33 gacagagaattcaacccttccaccaatcctgaatgcctatgaggtttataaagtaaaagacttctcacaatcagaaactgaacaagatgatggtaagct 131  Q
    |||| ||||||||||||||||||| ||||| ||||| | |||| ||||||  | ||||| ||||||||||||||||||| |||| ||||||||||||||    
T  21439430 gacacagaattcaacccttccacccatcctaaatgcatttgagatttatatgggaaaagtcttctcacaatcagaaactcaacaggatgatggtaagct 21439332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 4875188 - 4875132
Alignment:
Q  33 gacagagaattcaacccttccaccaatcctgaatgcctatgaggtttataaagtaaa 89  Q
    ||||||| |||||||||||||||| ||||||||||||| |||| |||||||| ||||    
T  4875188 gacagaggattcaacccttccaccgatcctgaatgcctttgagttttataaactaaa 4875132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 127
Target Start/End: Complemental strand, 4904478 - 4904415
Alignment:
Q  64 aatgcctatgaggtttataaagtaaaagacttctcacaatcagaaactgaacaagatgatggta 127  Q
    ||||||| |||| |||| || | ||||||||||  ||||||||||||||| |||||||||||||    
T  4904478 aatgcctttgagatttacaaggcaaaagacttcatacaatcagaaactgatcaagatgatggta 4904415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 326
Target Start/End: Complemental strand, 28410796 - 28410728
Alignment:
Q  258 tatttaagcacttactatcaattagttctcaatattttaacagtttaccatcaatttggtccccatatt 326  Q
    ||||||| |||| ||||||||| || |||| |||||||||||  |||| ||||||||||||| ||||||    
T  28410796 tatttaaccactaactatcaatcaggtctctatattttaacaagttactatcaatttggtcctcatatt 28410728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 337
Target Start/End: Original strand, 4949006 - 4949085
Alignment:
Q  258 tatttaagcacttactatcaattagttctcaatattttaacagtttaccatcaatttggtccccatattcaatcacttac 337  Q
    ||||||| ||||||||||||||||| || | ||||||||||| ||||| || ||||| ||| | ||||| || |||||||    
T  4949006 tatttaatcacttactatcaattaggtccctatattttaacaatttactattaatttcgtctctatatttaaccacttac 4949085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 9094930 - 9094878
Alignment:
Q  157 gagtaaaccaccaaattaacccctaactttatagggtgttctcaaataggtcc 209  Q
    ||||||||||||||||    |||||||||| ||| ||||||||||||||||||    
T  9094930 gagtaaaccaccaaatccgtccctaactttgtagtgtgttctcaaataggtcc 9094878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University