View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5432-Insertion-7 (Length: 505)

Name: NF5432-Insertion-7
Description: NF5432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5432-Insertion-7
NF5432-Insertion-7
[»] chr3 (15 HSPs)
chr3 (9-505)||(30488690-30489191)
chr3 (274-505)||(30519427-30519656)
chr3 (192-369)||(30515406-30515586)
chr3 (192-268)||(30519745-30519821)
chr3 (192-370)||(30484571-30484747)
chr3 (58-130)||(30519937-30520009)
chr3 (189-343)||(30504637-30504794)
chr3 (384-497)||(30504446-30504559)
chr3 (389-505)||(30484417-30484533)
chr3 (74-134)||(30456019-30456079)
chr3 (391-491)||(30515265-30515365)
chr3 (298-370)||(30453010-30453083)
chr3 (70-123)||(30482738-30482791)
chr3 (301-370)||(30482464-30482532)
chr3 (73-122)||(30485406-30485454)


Alignment Details
Target: chr3 (Bit Score: 449; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 9 - 505
Target Start/End: Complemental strand, 30489191 - 30488690
Alignment:
Q  9 tgcccatgtaaaacttgctatcaatataaac-----cttgcttgcagattataaaaagaatacattggttaaattctgcacaacaaacaattcttgtact 103  Q
    |||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30489191 tgcccatgtaaaacttgctatcaatataaactacttcttgcttgcagattataaaaagaatacattggttaaattctgcacaacaaacaattcttgtact 30489092  T
Q  104 gtaaccatagttgctgcatacaggtgacaagcnnnnnnngaatctgaaaacaaatcgaagacaaataaagatatccaacttcggttctcacatcagccaa 203  Q
    ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30489091 gtaaccatagttgctgcatacaggtgacaagcaaaaaaagaatctgaaaacaaatcgaagacaaataaagatatccaacttcggttctcacatcagccaa 30488992  T
Q  204 aacctattttgacttggtccattctagagattcaactctaagcaaaactaattgaggcctaaactataagttataatactgagaaacgagattcatttgg 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30488991 aacctattttgacttggtccattctagagattcaactctaagcaaaactaattgaggcctaaactataagttataatactgagaaacgagattcatttgg 30488892  T
Q  304 tttgtacactttactctaagatttatttagtctgtattcacatttcatatatagtattacattgaaaaatcggtgaacacatatatgtgataacttactt 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30488891 tttgtacactttactctaagatttatttagtctgtattcacatttcatatctagtactacattgaaaaatcggtgaacacatatatgtgataacttactt 30488792  T
Q  404 atataacttcaaaaatattgaattgcagggggcaactgaagaggtttaattgagcatcaacaaatgtttcaattcaatgtttacttcccaatttgaactg 503  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30488791 atataacttcaaaaatattgaattgaagggggcaactgaagaggtttaattgagcatcaacaaatgtttcaattcaatgtttacttcccaatttgaactg 30488692  T
Q  504 at 505  Q
    ||    
T  30488691 at 30488690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 274 - 505
Target Start/End: Complemental strand, 30519656 - 30519427
Alignment:
Q  274 ttataatactgagaaacgagattcatttggtttgtacactttactctaagatttatttagtctgtattcacatttcatatatagtattacattgaaaaat 373  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||  |    
T  30519656 ttataatactgagaaatgagatttatttggtttgtacactttactctaagatttatttagtctgtattcacatttcatatctagtactacattgaaa--t 30519559  T
Q  374 cggtgaacacatatatgtgataacttacttatataacttcaaaaatattgaattgcagggggcaactgaagaggtttaattgagcatcaacaaatgtttc 473  Q
    | |||||||||| | |||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  30519558 cagtgaacacatgtctgtgataacttagttatataacttcaaaaatattgaattgaagggggtaactgaagaggtttaattgagcatcaacaaatgtttc 30519459  T
Q  474 aattcaatgtttacttcccaatttgaactgat 505  Q
    ||||||||||| ||||||||||||||||||||    
T  30519458 aattcaatgttcacttcccaatttgaactgat 30519427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 192 - 369
Target Start/End: Complemental strand, 30515586 - 30515406
Alignment:
Q  192 cacatcagccaaaacctattttgacttggtccattctagagattcaactctaagcaaaactaattgaggcctaaactataag---ttataatactgagaa 288  Q
    |||||||| ||||||||||||| ||||  ||||||||||||| ||  ||||||||  ||||| ||||||  ||||||||||    |||||||||||| ||    
T  30515586 cacatcagtcaaaacctatttttacttcatccattctagagactcgtctctaagcccaactatttgaggattaaactataataaattataatactgaaaa 30515487  T
Q  289 acgagattcatttggtttgtacactttactctaagatttatttagtctgtattcacatttcatatatagtattacattgaa 369  Q
    | |||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||| |||||||||    
T  30515486 atgagatttatttggtttgtacactttactctaagacttatttagtctgtattcatatttcatatctagtactacattgaa 30515406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 192 - 268
Target Start/End: Complemental strand, 30519821 - 30519745
Alignment:
Q  192 cacatcagccaaaacctattttgacttggtccattctagagattcaactctaagcaaaactaattgaggcctaaact 268  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||    
T  30519821 cacatcagccaaaacctaatttgacttgatccattctagagattcaactctaagcgaaactaattgaggcttaaact 30519745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 192 - 370
Target Start/End: Complemental strand, 30484747 - 30484571
Alignment:
Q  192 cacatcagccaaaacctattttgacttggtccattctagagattcaactctaagcaaaactaattgaggcctaaact---ataagttataatactgagaa 288  Q
    |||||||||||||||||||||| ||||  ||||||||||||| ||  ||||||||  ||||| ||||||  ||||||   |||| |||||||||||| ||    
T  30484747 cacatcagccaaaacctatttttacttcatccattctagagactcgtctctaagcccaactatttgaggattaaactctaataaattataatactgaaaa 30484648  T
Q  289 acgagattcatttggtttgtacactttactctaagatttatttagtctgtattcacatttcatatatagtattacattgaaa 370  Q
    | |||||  |||||||     |||||||||| |||| |||||||||||||||||| | ||||||| ||||| ||||||||||    
T  30484647 atgagatatatttggt-----cactttactccaagacttatttagtctgtattcatacttcatatctagtactacattgaaa 30484571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 30520009 - 30519937
Alignment:
Q  58 aaagaatacattggttaaattctgcacaacaaacaattcttgtactgtaaccatagttgctgcatacaggtga 130  Q
    ||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||| |||||||    
T  30520009 aaagaatacattggttaaattatgcacaacaaactattcctgtactgtaaccatagttgctgcatccaggtga 30519937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 189 - 343
Target Start/End: Complemental strand, 30504794 - 30504637
Alignment:
Q  189 tctcacatcagccaaaacctattttgacttggtccattctagagattcaactctaagcaaaactaattgaggcctaaactataag---ttataatactga 285  Q
    |||||||||| |||||||||||||| ||||   |||||||||||| ||  |||||||   ||||| ||||||  ||||||||||    ||||||||||||    
T  30504794 tctcacatcatccaaaacctatttttacttcaaccattctagagactcgtctctaagaccaactatttgaggattaaactataataaattataatactga 30504695  T
Q  286 gaaacgagattcatttggtttgtacactttactctaagatttatttagtctgtattca 343  Q
     | | |||||| |||||||||||||||| ||||||| || ||||||||||||||||||    
T  30504694 aacatgagatttatttggtttgtacactgtactctatgacttatttagtctgtattca 30504637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 384 - 497
Target Start/End: Complemental strand, 30504559 - 30504446
Alignment:
Q  384 atatatgtgataacttacttatataacttcaaaaatattgaattgcagggggcaactgaagaggtttaattgagcatcaacaaatgtttcaattcaatgt 483  Q
    |||| ||||||||||||||||||||||||||||||||||||| |  |||||||||||||| ||  |||| | ||  || ||||||||||| |||| ||||    
T  30504559 atatctgtgataacttacttatataacttcaaaaatattgaactaaagggggcaactgaacagtcttaactaagactccacaaatgtttcgattcgatgt 30504460  T
Q  484 ttacttcccaattt 497  Q
    | ||||||||||||    
T  30504459 tcacttcccaattt 30504446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 389 - 505
Target Start/End: Complemental strand, 30484533 - 30484417
Alignment:
Q  389 tgtgataacttacttatataacttcaaaaatattgaattgcagggggcaactgaagaggtttaattgagcatcaacaaatgtttcaattcaatgtttact 488  Q
    ||||||||||| |||||||||||||||||||||||||| | |||| | ||||||| ||  |||||| ||  || |||||||| ||||||||||||| |||    
T  30484533 tgtgataacttccttatataacttcaaaaatattgaatagaagggagtaactgaacagtcttaattaagactccacaaatgtctcaattcaatgttcact 30484434  T
Q  489 tcccaatttgaactgat 505  Q
    ||| |||||||| ||||    
T  30484433 tccgaatttgaagtgat 30484417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 30456079 - 30456019
Alignment:
Q  74 aaattctgcacaacaaacaattcttgtactgtaaccatagttgctgcatacaggtgacaag 134  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||| | |||||||||    
T  30456079 aaattctgcacaacaaactatttttgtactgtaaccatagttgctgcattcgggtgacaag 30456019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 391 - 491
Target Start/End: Complemental strand, 30515365 - 30515265
Alignment:
Q  391 tgataacttacttatataacttcaaaaatattgaattgcagggggcaactgaagaggtttaattgagcatcaacaaatgtttcaattcaatgtttacttc 490  Q
    ||||||||| |||||||| ||||||||||||||||||| |||| ||||||||| ||  ||||||  |  ||  ||||||||||||||||||||| |||||    
T  30515365 tgataacttccttatatagcttcaaaaatattgaattgaagggagcaactgaacagtcttaattaggactcctcaaatgtttcaattcaatgttcacttc 30515266  T
Q  491 c 491  Q
    |    
T  30515265 c 30515265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 298 - 370
Target Start/End: Complemental strand, 30453083 - 30453010
Alignment:
Q  298 atttggtttgtacactttactcta-agatttatttagtctgtattcacatttcatatatagtattacattgaaa 370  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||  |||| | ||||||||    
T  30453083 atttggtttgtacactttactctttagatttatttactctgtattcacatttcatatcaagtacttcattgaaa 30453010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 30482791 - 30482738
Alignment:
Q  70 ggttaaattctgcacaacaaacaattcttgtactgtaaccatagttgctgcata 123  Q
    |||||||||| ||||||||||| ||||||||| |||||||||||||||| ||||    
T  30482791 ggttaaattcggcacaacaaactattcttgtattgtaaccatagttgctacata 30482738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 301 - 370
Target Start/End: Complemental strand, 30482532 - 30482464
Alignment:
Q  301 tggtttgtacactttactct-aagatttatttagtctgtattcacatttcatatatagtattacattgaaa 370  Q
    |||||||||||||||||| | ||||||||||||  |||| ||||||||||||||| |||| ||||||||||    
T  30482532 tggtttgtacactttacttttaagatttattta--ctgtcttcacatttcatataaagtactacattgaaa 30482464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 30485454 - 30485406
Alignment:
Q  73 taaattctgcacaacaaacaattcttgtactgtaaccatagttgctgcat 122  Q
    ||||||||||||||||||| |||| | ||||||||||||||||| |||||    
T  30485454 taaattctgcacaacaaactattc-tatactgtaaccatagttgatgcat 30485406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University