View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5432_high_2 (Length: 388)
Name: NF5432_high_2
Description: NF5432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5432_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 5 - 373
Target Start/End: Original strand, 48374809 - 48375177
Alignment:
| Q |
5 |
attaataatatgaaggctcccattactacagatttagggttagttgccacaccttatgactatggagcaggggacataacaacaattgaatcattccaac |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48374809 |
attaataatatgaaggctcccattactacagatttagggtcagttgccacaccttatgactatggagcaggggacataacaacaattgaatcattccaac |
48374908 |
T |
|
| Q |
105 |
caggtctcgtttatgaaactagcaccattgactacttgaactacttgtgttacataggatacaacacaaccactattaaggttatttcaaaaactgtccc |
204 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48374909 |
caggtctcgtttatgaaactagcaccattgactacttgaattacttgtgttacataggatacaacacaaccactattaaggttatttcaaaaactgtccc |
48375008 |
T |
|
| Q |
205 |
tgatactttcaactgccccaaggaatcaactcctgatcatatttccaatatcaattatccttccatagcaatttccaacttcactgggaaagaaactgtg |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48375009 |
tgatactttcaactgccccaaggaatcaactcctgatcatatttccaatatcaattatccttccatagcaatttccaacttcactgggaaagaaactgtg |
48375108 |
T |
|
| Q |
305 |
aatgtgagtagaactgttacaaacgttggcgaagaggatgaagtagcctactctgccatagttaatgct |
373 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48375109 |
aatgtgagtagaactgttacaaacgttggcgaagaggatgaagtagcctactctgccatagttaatgct |
48375177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 373
Target Start/End: Complemental strand, 53430997 - 53430639
Alignment:
| Q |
15 |
tgaaggctcccattactacagatttagggttagttgccacaccttatgactatggagcaggggacataacaacaattgaatcattccaaccaggtctcgt |
114 |
Q |
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|||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||| || |||||| ||| |||||||| || ||||||||| || |
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| T |
53430997 |
tgaaggatcccattacaacagatttagggtcgattgccacaccttatgactatggagcaggtgaaataacaccaactgaatcataccgaccaggtcttgt |
53430898 |
T |
|
| Q |
115 |
ttatgaaactagcaccattgactacttgaactacttgtgttacataggatacaacacaaccactattaaggttatttcaaaaactgtccctgatactttc |
214 |
Q |
| |
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||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
53430897 |
ttatgaaaccagcaccattgactacttgaacttcttgtgttacataggatataacacaacaactattaaggttatttcaaaaactgtccctgataatttc |
53430798 |
T |
|
| Q |
215 |
aactgccccaaggaatcaactcctgatcatatttccaatatcaattatccttccatagcaatttccaacttcactgggaaagaaactgtgaatgtgagta |
314 |
Q |
| |
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|||||||| ||||| || |||| |||||||||||||||||| ||||| |||||||||||||| |||||||||||||||| || || ||||||||| |||| |
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| T |
53430797 |
aactgccctaaggattcgactcgtgatcatatttccaatattaattacccttccatagcaatctccaacttcactgggataggaagtgtgaatgtaagta |
53430698 |
T |
|
| Q |
315 |
gaactgttacaaacgttggcgaagaggatgaagtagcctactctgccatagttaatgct |
373 |
Q |
| |
|
|||||||||||||||| || |||||||||||| || |||||| ||||| ||| ||||| |
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|
| T |
53430697 |
gaactgttacaaacgtcggtgaagaggatgaaacagtctactccgccatcgttgatgct |
53430639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 373
Target Start/End: Complemental strand, 53423045 - 53422676
Alignment:
| Q |
5 |
attaataatatgaaggctcccattactacagatttagggttagttgccacaccttatgactatggagcaggggacataacaacaattgaatcattccaac |
104 |
Q |
| |
|
||||| |||||||||| ||||||||| || |||||||||| | ||||||||||||||||||||||||||||||| || |||| | |||||||||||||| |
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| T |
53423045 |
attaacaatatgaaggatcccattacaacggatttagggtcaattgccacaccttatgactatggagcaggggaaattacaatatctgaatcattccaac |
53422946 |
T |
|
| Q |
105 |
caggtctcgtttatgaaactagcaccattgactacttgaactacttgtgttacataggatacaacacaa-ccactattaaggttatttcaaaaactgtcc |
203 |
Q |
| |
|
|||| || ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| |||| ||||||| ||| |||||||| |||| |
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| T |
53422945 |
cagggctagtttatgaaaccagcaccattgactacttgaactacttgtgttacctaggatacaatacaacccacaattaaggctatctcaaaaaccgtcc |
53422846 |
T |
|
| Q |
204 |
ctgatactttcaactgccccaaggaatcaactcctgatcatatttccaatatcaattatccttccatagcaatttccaacttcactgggaaagaaactgt |
303 |
Q |
| |
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||| || ||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| || || ||| |
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| T |
53422845 |
ctggtagtttcagttgccctaaggattcaactcctgatcatatttccaatatcaactatccttcaatagcaatctccaacttcactgggagaggaagtgt |
53422746 |
T |
|
| Q |
304 |
gaatgtgagtagaactgttacaaacgttggcgaagaggatgaagtagcctactctgccatagttaatgct |
373 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||| || |||||| ||||| ||| ||||| |
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| T |
53422745 |
gaatgtgagtagaactgttacaaatgttggtgaagaggatgaaacagtctactccgccatcgttgatgct |
53422676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 5 - 357
Target Start/End: Complemental strand, 26095394 - 26095042
Alignment:
| Q |
5 |
attaataatatgaaggctcccattactacagatttagggttagttgccacaccttatgactatggagcaggggacataacaacaattgaatcattccaac |
104 |
Q |
| |
|
||||| |||||||||| ||||||| | ||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||| |||| || |||||| |
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|
| T |
26095394 |
attaacaatatgaagggtcccattgcaacagatttagggttaattgccacaccttatgactatggagctggggggataacaacaactgaaccactccaac |
26095295 |
T |
|
| Q |
105 |
caggtctcgtttatgaaactagcaccattgactacttgaactacttgtgttacataggatacaacacaaccactattaaggttatttcaaaaactgtccc |
204 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||| ||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
26095294 |
cagggctcgtttatgaaaccagcaccattgactacttgaacttcttgtgttatataggatataacacaaccaccattaaggttatttcaaaaactgtccc |
26095195 |
T |
|
| Q |
205 |
tgatactttcaactgccccaaggaatcaactcctgatcatatttccaatatcaattatccttccatagcaatttccaacttcactgggaaagaaactgtg |
304 |
Q |
| |
|
||||| |||||||||||| ||||| || || | |||||||||||||||||||||||| |||||||| ||||| || |||||| |||||||| | | ||| |
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|
| T |
26095194 |
tgatagtttcaactgccctaaggattcgacgcgtgatcatatttccaatatcaattacccttccatcgcaatctctaacttcggtgggaaaggatcggtg |
26095095 |
T |
|
| Q |
305 |
aatgtgagtagaactgttacaaacgttggcgaagaggatgaagtagcctactc |
357 |
Q |
| |
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||||| ||||||| |||||||||||| || |||||||| ||| ||| |||||| |
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|
| T |
26095094 |
aatgtcagtagaattgttacaaacgtcggtgaagaggaggaaatagtctactc |
26095042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 5 - 355
Target Start/End: Complemental strand, 53307847 - 53307497
Alignment:
| Q |
5 |
attaataatatgaaggctcccattactacagatttagggttagttgccacaccttatgactatggagcaggggacataacaacaattgaatcattccaac |
104 |
Q |
| |
|
||||| |||||||||||||||||||| || |||| |||| | |||||||||||||||||||||||||||| || |||||||||| |||| ||||||||| |
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|
| T |
53307847 |
attaacaatatgaaggctcccattaccacgaatttggggtcaattgccacaccttatgactatggagcaggagaaataacaacaactgaaccattccaac |
53307748 |
T |
|
| Q |
105 |
caggtctcgtttatgaaactagcaccattgactacttgaactacttgtgttacataggatacaacacaaccactattaaggttatttcaaaaactgtccc |
204 |
Q |
| |
|
| || || ||||||||||||||||||||||||||| | |||||||||||||||||||||| || |||||||| | ||| |||| || ||||| | ||| |
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|
| T |
53307747 |
ccgggctagtttatgaaactagcaccattgactacctaaactacttgtgttacataggattgaatacaaccacggtgaagattatctctaaaaccgcccc |
53307648 |
T |
|
| Q |
205 |
tgatactttcaactgccccaaggaatcaactcctgatcatatttccaatatcaattatccttccatagcaatttccaacttcactgggaaagaaactgtg |
304 |
Q |
| |
|
||||| |||||||||||||||||| |||||| ||||||| | || || ||||| || |||||||||||||| |||||||||| ||| |||||||| | |
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|
| T |
53307647 |
tgatagtttcaactgccccaaggattcaactattgatcatgtctcgaacatcaactacccttccatagcaatctccaacttcattggtaaagaaacaaag |
53307548 |
T |
|
| Q |
305 |
aatgtgagtagaactgttacaaacgttggcgaagaggatgaagtagcctac |
355 |
Q |
| |
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|||||||| |||| ||| ||||| || || |||||||||||| ||| |||| |
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|
| T |
53307547 |
aatgtgagcagaattgtcacaaaagtcggtgaagaggatgaaatagtctac |
53307497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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