View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5432_low_1 (Length: 442)
Name: NF5432_low_1
Description: NF5432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5432_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 11 - 425
Target Start/End: Complemental strand, 31275615 - 31275201
Alignment:
| Q |
11 |
cacagaacaacaactcaaactccgaaatcaggtcacgcaatgtttcgaacacatccagaattttaaacaacctctccggcgaacggcttccaattgcgac |
110 |
Q |
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| T |
31275615 |
cacagaacaacaactcaaactccgaaattaggtcacgcaatgtttcaaacacatccagaattttaaacaaccgctccggcgaacggcttccaattgcgac |
31275516 |
T |
|
| Q |
111 |
cgcatcagcgaaattcaacaactgaactgtagaacctctacaaacctccatgaaagaaaaatctgcagctgaagagaatccaaaaaacacgcgatcgcat |
210 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31275515 |
cgcatcggcgaaattcaacaactgaactgtagaacctctacaaacctccatgaaagaaaaatctgcagctgaagagaatccaaaaaacacgcgatcgcat |
31275416 |
T |
|
| Q |
211 |
aatcttcgctcactcggaaaaagtatcttcaaagcaacattgaaacctttaagccatctttcaatttcatcttcaatatcttgccactgcattttgtgaa |
310 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31275415 |
aatcgtcgctcactcggaaaaagtatcttcaaagcaacattgaaacctttaatccatctttcaatttcatcttcaatatcttgccactgcattttgtgaa |
31275316 |
T |
|
| Q |
311 |
catcttcaatactcagcttctgtaaccctaatctcgataaactctcctccaagaattctctccggcaactactgtaaacatgcgaacactctttcccaaa |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || || ||||||||||||||||| ||||| |
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| T |
31275315 |
catcttcaatactcagcttctgtaaccctaatctcgataaactttcctccaagaattctctccggcaactgctatacacatgcgaacactcttttccaaa |
31275216 |
T |
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| Q |
411 |
tccaccggcaaccat |
425 |
Q |
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| T |
31275215 |
tccaccggcaaccat |
31275201 |
T |
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Back To:
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Target: chr3 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 220 - 410
Target Start/End: Complemental strand, 26908824 - 26908634
Alignment:
| Q |
220 |
tcactcggaaaaagtatcttcaaagcaacattgaaacctttaagccatctttcaatttcatcttcaatatcttgccactgcattttgtgaacatcttcaa |
319 |
Q |
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||||||||||| || ||||||| ||||||||| || | |||| ||||| ||||||||||||||||| ||||||||| ||||| || ||||| || || |
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| T |
26908824 |
tcactcggaaacagaatcttcagagcaacattcgaagccttaatccatcgttcaatttcatcttcaagatcttgccattgcatcttatgaacttccgaaa |
26908725 |
T |
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| Q |
320 |
tactcagcttctgtaaccctaatctcgataaactctcctccaagaattctctccggcaactactgtaaacatgcgaacactctttcccaaa |
410 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||| || || |||| |||| || |||||||||||||||||| |||||||| |
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| T |
26908724 |
tactcaatttctgtaaccctaatctcgataaactctcttccaaaaactccctcctacaaccaccgtaaacatgcgaacactccttcccaaa |
26908634 |
T |
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