View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5432_low_3 (Length: 264)

Name: NF5432_low_3
Description: NF5432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5432_low_3
NF5432_low_3
[»] chr4 (5 HSPs)
chr4 (7-244)||(48912526-48912763)
chr4 (12-228)||(48965095-48965311)
chr4 (12-124)||(48957910-48958022)
chr4 (21-111)||(48967233-48967323)
chr4 (186-246)||(48958084-48958144)
[»] scaffold0536 (3 HSPs)
scaffold0536 (12-246)||(6690-6924)
scaffold0536 (12-246)||(10672-10906)
scaffold0536 (188-230)||(1648-1690)
[»] chr5 (2 HSPs)
chr5 (18-208)||(28385106-28385296)
chr5 (12-226)||(12540451-12540665)
[»] chr2 (3 HSPs)
chr2 (21-208)||(13439975-13440162)
chr2 (21-111)||(13448138-13448228)
chr2 (14-196)||(13454602-13454784)
[»] chr8 (1 HSPs)
chr8 (36-111)||(12641795-12641870)
[»] chr7 (1 HSPs)
chr7 (18-208)||(3417744-3417934)
[»] chr6 (1 HSPs)
chr6 (186-244)||(12590353-12590411)


Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 7 - 244
Target Start/End: Complemental strand, 48912763 - 48912526
Alignment:
Q  7 tcgagtgagatgaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccat 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912763 tcgaatgagatgaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccat 48912664  T
Q  107 caatcgcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccacccca 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912663 caatcgcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccacccca 48912564  T
Q  207 atcccatgcacctgtgttatcaacttctcattgtaaaa 244  Q
    ||||||||||||||||||||||||||||||||||||||    
T  48912563 atcccatgcacctgtgttatcaacttctcattgtaaaa 48912526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 48965095 - 48965311
Alignment:
Q  12 tgagatgaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatc 111  Q
    ||||| || |||||||||| ||| ||  || |||| || || ||||||||| ||||| |   ||| ||||||||||||||||||||||||||||||||||    
T  48965095 tgagacgagccaccttcttgaatggctcgtctagccttttctccaaactcttgagcacgacttctaattttctcagcttcatcaccactgtccatcaatc 48965194  T
Q  112 gcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatccc 211  Q
     | ||||| ||||||| ||  |||| || |  |||| ||||||||||||  ||| ||||||    | |||||| |||||||| || ||||| ||||||||    
T  48965195 tcctcacagccttctctatgctatcactactcaccagcttctctctttcttcaaaaccagtcaaacaccattctgttgcaccaacttccactccaatccc 48965294  T
Q  212 atgcacctgtgttatca 228  Q
      |||| | ||||||||    
T  48965295 tcgcacttctgttatca 48965311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 48957910 - 48958022
Alignment:
Q  12 tgagatgaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatc 111  Q
    |||||||| |||||||||| ||  ||  || |||| || || || |||||| ||||| | ||| |||||| ||||||||||||||||| |||||||||||    
T  48957910 tgagatgatccaccttcttgaacagctcgtgtagccttttctccgaactcttgagcacgctgtttgatttcctcagcttcatcaccaccgtccatcaatc 48958009  T
Q  112 gcttcacaacctt 124  Q
     ||||||| ||||    
T  48958010 tcttcacagcctt 48958022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 48967233 - 48967323
Alignment:
Q  21 ccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatc 111  Q
    |||||||||| || |||  || |||| || || ||||| ||||||||| |||||||||| ||||||||||||||  || ||||||||||||    
T  48967233 ccaccttcttgaagtgctcgtgtagccttttctccaaagtctcgagcacgttgtctgatcttctcagcttcatcgtcattgtccatcaatc 48967323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 48958084 - 48958144
Alignment:
Q  186 gttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaatt 246  Q
    |||||||| |||||||||||||| ||  |||| |  |||||||||||||||||||| ||||    
T  48958084 gttgcaccaacctccaccccaattcctcgcacattagttatcaacttctcattgtagaatt 48958144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 12 - 246
Target Start/End: Complemental strand, 6924 - 6690
Alignment:
Q  12 tgagatgaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatc 111  Q
    ||||||||||||||||||| |   ||||||||||| || |||||||||||||||||||  | | |||||||||||||||| |||||||  ||||||||||    
T  6924 tgagatgaaccaccttcttgagccgcatgtttagccttatccccaaactctcgagcatactttttgattttctcagcttcgtcaccaccatccatcaatc 6825  T
Q  112 gcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatccc 211  Q
     | ||||| ||||||||||| |||||||||  |||||||||||||| ||||||||||||||||  ||||| || | ||| || ||| |||||||||| |     
T  6824 tcctcacagccttctcaatactatccctccccaccaccttctctctctccccaataccagttgaactccactcagctgcccccaccaccaccccaattcg 6725  T
Q  212 atgcacctgtgttatcaacttctcattgtaaaatt 246  Q
      ||||||||||||||||||| |||||||||||||    
T  6724 tcgcacctgtgttatcaacttttcattgtaaaatt 6690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 12 - 246
Target Start/End: Complemental strand, 10906 - 10672
Alignment:
Q  12 tgagatgaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatc 111  Q
    ||||||||||||||||| | |   |||  |||||| || ||||||||||||||||||||| |||||||| |||||||| ||| || | ||||||||||||    
T  10906 tgagatgaaccaccttcctgagccgcacatttagccttatccccaaactctcgagcatgtcgtctgattatctcagctacataactattgtccatcaatc 10807  T
Q  112 gcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatccc 211  Q
     |||||||||||||||||||  ||||||||  |||| ||||||| | ||||||||||||  |  || ||| ||   |||||| || ||| ||||||||||    
T  10806 tcttcacaaccttctcaataccatccctcccgaccaacttctctttctccccaataccaactaagcaccactctactgcacccacttcccccccaatccc 10707  T
Q  212 atgcacctgtgttatcaacttctcattgtaaaatt 246  Q
      |||| || |||||||||||||||||||||||||    
T  10706 ccgcacttgcgttatcaacttctcattgtaaaatt 10672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 1690 - 1648
Alignment:
Q  188 tgcaccgacctccaccccaatcccatgcacctgtgttatcaac 230  Q
    ||||||||| ||||| ||||||||||||||||| |||||||||    
T  1690 tgcaccgacttccactccaatcccatgcacctgagttatcaac 1648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 28385106 - 28385296
Alignment:
Q  18 gaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttca 117  Q
    ||||||||||||||||  ||  || |||| ||||| || |||||||||||| ||||||| || || ||||||||||| |||| ||||||||||  | |||    
T  28385106 gaaccaccttctttaacagctcgtgtagccttctctcctaactctcgagcacgttgtctcatattttcagcttcatcgccaccgtccatcaatttcctca 28385205  T
Q  118 caaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaat 208  Q
     | ||||||| || ||||| || |  |||| ||||| ||| |||||| ||||| |||| | |||||||||| |||| || ||||| |||||    
T  28385206 tagccttctctatgttatctctgctcaccaacttctttctctccccattaccatttgtacaccattccgttacacctacttccactccaat 28385296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 12540451 - 12540665
Alignment:
Q  12 tgagatgaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatc 111  Q
    ||||| ||||||||||||| ||  ||  || |||| ||||| |||| |||||| ||| || |||| || || |||||||||| |||||  ||||||||||    
T  12540451 tgagaggaaccaccttcttgaacagctcgtctagccttctctccaatctctcgtgcacgtagtctcatattttcagcttcataaccaccatccatcaatc 12540550  T
Q  112 gcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatccc 211  Q
     | ||| | ||||||| ||   ||| || | ||||| ||||| ||| |||||| ||||| |||| | |||||| |||||||| || || || ||||| ||    
T  12540551 tcctcatagccttctctatgccatctctgccaaccaacttctttctctccccattaccatttgtacaccattctgttgcacctacttctactccaattcc 12540650  T
Q  212 atgcacctgtgttat 226  Q
      | |||||||||||    
T  12540651 tcggacctgtgttat 12540665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 208
Target Start/End: Original strand, 13439975 - 13440162
Alignment:
Q  21 ccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaa 120  Q
    |||||||||| ||| || ||| |||| || || ||||||||| ||||| || | || || || | ||||||||||||| | |||||||||| | |||||     
T  13439975 ccaccttcttgaatagcttgtgtagccttttctccaaactcttgagcaagtagcctcatatttttagcttcatcaccattctccatcaatctcctcacag 13440074  T
Q  121 ccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaat 208  Q
    ||||||| || |||||||| |  |||| ||||||||| ||| ||| |||| |  | | |||||||||||||||||| ||||| |||||    
T  13440075 ccttctctatgttatccctgctcaccaacttctctctctccgcaacaccattcttacaccattccgttgcaccgacttccactccaat 13440162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 13448138 - 13448228
Alignment:
Q  21 ccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatc 111  Q
    |||||||||| ||| || ||| ||||||| || ||||||||||||||| || | ||||| || |||||||||||||||| |||||||||||    
T  13448138 ccaccttcttgaatagcttgtatagctttttctccaaactctcgagcacgtagcctgatattttcagcttcatcaccaccgtccatcaatc 13448228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 196
Target Start/End: Original strand, 13454602 - 13454784
Alignment:
Q  14 agatgaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgc 113  Q
    |||||| ||||||| || ||| || ||| |||| || || ||||||||||||||| ||   ||||| || | |||||||||||||| | ||||||||| |    
T  13454602 agatgagccacctttttgaatagcttgtgtagccttttctccaaactctcgagcacgtaccctgatatttttagcttcatcaccaccgcccatcaatctc 13454701  T
Q  114 ttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgac 196  Q
     ||||| ||||||| ||  ||||  | |  |||| ||||||||| ||| ||| |||| |||| | |||||| |||||||||||    
T  13454702 ctcacagccttctctatgctatctttgctcaccaacttctctctctccgcaacaccacttgtacaccattctgttgcaccgac 13454784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 12641870 - 12641795
Alignment:
Q  36 gcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatc 111  Q
    |||||| |||| || | |||||||||| ||||| |||||||||||| || |||||||||||||  |||||||||||    
T  12641870 gcatgtgtagcctttttcccaaactcttgagcacgttgtctgatttccttagcttcatcaccatcgtccatcaatc 12641795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 3417934 - 3417744
Alignment:
Q  18 gaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttca 117  Q
    ||||||||||||| ||| ||  ||||||| ||||| |||| |||||||||| || |||| ||    ||||| ||||||| |||||||||||||| | |||    
T  3417934 gaaccaccttcttgaatagctcgtttagccttctctccaagctctcgagcacgtagtctcataccttcagcctcatcactactgtccatcaatctcctca 3417835  T
Q  118 caaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaat 208  Q
       ||||||| || | ||| || |  |||| ||||| ||| ||||||||||||  ||  | |||||| |||||||| || ||||| |||||    
T  3417834 ttgccttctctatgtcatctctgctcaccaacttctttctctccccaataccatgtgcacgccattctgttgcacctacttccactccaat 3417744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 244
Target Start/End: Complemental strand, 12590411 - 12590353
Alignment:
Q  186 gttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaa 244  Q
    |||||||| || ||||| ||||| |||||||| |  |||||||||||||||||||||||    
T  12590411 gttgcaccaacttccactccaattccatgcacatcagttatcaacttctcattgtaaaa 12590353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University