View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5432_low_5 (Length: 238)

Name: NF5432_low_5
Description: NF5432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5432_low_5
NF5432_low_5
[»] chr3 (12 HSPs)
chr3 (24-222)||(30489188-30489386)
chr3 (24-186)||(30520059-30520217)
chr3 (24-181)||(30505079-30505232)
chr3 (24-186)||(30485581-30485741)
chr3 (24-154)||(30515866-30515998)
chr3 (24-194)||(30506519-30506690)
chr3 (24-192)||(30521919-30522089)
chr3 (59-134)||(8412092-8412167)
chr3 (24-67)||(30482892-30482935)
chr3 (97-199)||(30518260-30518358)
chr3 (111-180)||(30482822-30482888)
chr3 (69-201)||(30487088-30487215)
[»] chr1 (1 HSPs)
chr1 (30-134)||(16933356-16933460)
[»] chr5 (1 HSPs)
chr5 (57-195)||(38510378-38510513)
[»] chr2 (1 HSPs)
chr2 (92-135)||(29265219-29265262)


Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 24 - 222
Target Start/End: Complemental strand, 30489386 - 30489188
Alignment:
Q  24 gttgatattgataaatggagagaatcctaactctgatagaagttggattatgattttccgattaaattgggtgtttcccactacagacctctctcattgt 123  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30489386 gttgatactgataaatggagagaatcctaactctgatagaagttggattatgattttccgattaaattgggtgtttcccactacagacctctctcattgt 30489287  T
Q  124 aatcatcgccccatttttctaccttcagcaagcaaaacagctgaaagcaatgaacaatgaatctaacccacacttataatgaacaataaatcatctgcc 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30489286 aatcatcgccccatttttctaccttcagcaagcaaaacagctgaaagcaatgaacaatgaatctaacccacacttataatgaacaataaatcatgtgcc 30489188  T

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Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 24 - 186
Target Start/End: Complemental strand, 30520217 - 30520059
Alignment:
Q  24 gttgatattgataaatggagagaatcctaactctgatagaagttggattatgattttccgattaaattgggtgtttcccactacagacctctctcattgt 123  Q
    |||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30520217 gttgatattgataaatggagaggattctaactctgatagaagttgggttatgattttccgattaaattgggtatttcccactacagacctctctcattgt 30520118  T
Q  124 aatcatcgccccatttttctaccttcagcaagcaaaacagctgaaagcaatgaacaatgaatc 186  Q
    |||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||    
T  30520117 aatcatcgccccatttttctaccttca----gcaaaacagctgaaagcaatgaacaatgaatc 30520059  T

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Target: chr3; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 24 - 181
Target Start/End: Complemental strand, 30505232 - 30505079
Alignment:
Q  24 gttgatattgataaatggagagaatcctaactctgatagaagttggattatgattttccgattaaattgggtgtttcccactacagacctctctcattgt 123  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||  |||| |||| |||||||||| ||||||||||||||||    
T  30505232 gttgatattgataaatggagaggatcctaactctgatagaagttgggttatgattttccgaacaaatagggtatttcccactaaagacctctctcattgt 30505133  T
Q  124 aatcatcgccccatttttctaccttcagcaagcaaaacagctgaaagcaatgaacaat 181  Q
    |||||||||||| ||||||||| |||    ||||||||||||||||||||||||||||    
T  30505132 aatcatcgccccttttttctactttc----agcaaaacagctgaaagcaatgaacaat 30505079  T

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Target: chr3; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 24 - 186
Target Start/End: Complemental strand, 30485741 - 30485581
Alignment:
Q  24 gttgatattgataaatggagagaatcctaactctgatagaagttggattatgattttccgattaaattgggtgtttcccactacagacctc--tctcatt 121  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||| |||||||||| |||||||  |||||||    
T  30485741 gttgatattgataaatggagaggatcctaactctgatagaagttgggttatgattttctgaataaattgggtatttcccactaaagacctctctctcatt 30485642  T
Q  122 gtaatcatcgccccatttttctaccttcagcaagcaaaacagctgaaagcaatgaacaatgaatc 186  Q
    |||||||| ||||||||||||||| |||    |||||||||||||||||||||||| ||||||||    
T  30485641 gtaatcattgccccatttttctactttc----agcaaaacagctgaaagcaatgaataatgaatc 30485581  T

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Target: chr3; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 24 - 154
Target Start/End: Complemental strand, 30515998 - 30515866
Alignment:
Q  24 gttgatattgataaatggagagaatcctaactctgatagaagttggattatgattttccgattaaattgggtgtttcccactacagacctc--tctcatt 121  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||  |||||||||| |||||||  |||||||    
T  30515998 gttgatattgataaatggagaggatcctaactctgatagaagttgggttatgattttctgaataaattgggcatttcccactaaagacctctctctcatt 30515899  T
Q  122 gtaatcatcgccccatttttctaccttcagcaa 154  Q
     ||||||||||||||||||||||| ||||||||    
T  30515898 ataatcatcgccccatttttctactttcagcaa 30515866  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 194
Target Start/End: Complemental strand, 30506690 - 30506519
Alignment:
Q  24 gttgatattgataaatggagagaatcctaactctgatagaagtt-ggattatgattttccgattaaattg---ggtgtttcccactacagacctctctca 119  Q
    |||||||||| |||||||||  |||||||||||||||||||||| || || ||||||||||||| |||||     | |||||||||| || ||||||||     
T  30506690 gttgatattggtaaatggagcaaatcctaactctgatagaagttagggttctgattttccgattgaattgattattatttcccactaaaggcctctctcg 30506591  T
Q  120 ttgtaatcatcgccccatt-tttctaccttcagcaagcaaaacagctgaaagcaatgaacaatgaatctaacccac 194  Q
    || |||| ||| |||  || ||| |||||||    | |||| ||||||||||||||||||||||||||||||||||    
T  30506590 ttataataatctcccttttctttataccttc----atcaaatcagctgaaagcaatgaacaatgaatctaacccac 30506519  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 192
Target Start/End: Complemental strand, 30522089 - 30521919
Alignment:
Q  24 gttgatattgataaatggagagaatcctaactctgatagaagtt-ggattatgattttccgattaaattgggtgtt---tcccactacagacctctctca 119  Q
    |||||||||| |||||||||  |||  |||||||| |||||||| || || ||||||||||||| |||||||| ||   |||||||| || |||||||||    
T  30522089 gttgatattggtaaatggagcaaattgtaactctggtagaagttagggttctgattttccgattgaattgggtattatttcccactaaaggcctctctca 30521990  T
Q  120 ttgtaatcatcgccccatt-tttctaccttcagcaagcaaaacagctgaaagcaatgaacaatgaatctaaccc 192  Q
    || ||||||| ||||| || ||| ||||||||||        ||||||||||||||||||||||||||||||||    
T  30521989 ttataatcatggcccctttctttttaccttcagc---gttttcagctgaaagcaatgaacaatgaatctaaccc 30521919  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 134
Target Start/End: Original strand, 8412092 - 8412167
Alignment:
Q  59 atagaagttggattatgattttccgattaaattgggtgtttcccactacagacctctctcattgtaatcatcgccc 134  Q
    |||||||||||  | ||||||||| ||  ||||||||  ||||||||| |||| ||||||||| ||||||||||||    
T  8412092 atagaagttgggatctgattttcccatagaattgggtacttcccactaaagacttctctcattataatcatcgccc 8412167  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 30482935 - 30482892
Alignment:
Q  24 gttgatattgataaatggagagaatcctaactctgatagaagtt 67  Q
    ||||||||||||||||||||  |||||||| |||||||||||||    
T  30482935 gttgatattgataaatggagcaaatcctaaatctgatagaagtt 30482892  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 199
Target Start/End: Complemental strand, 30518358 - 30518260
Alignment:
Q  97 tttcccactacagacctctctcattgtaatcatcgccccatt-tttctaccttcagcaagcaaaacagctgaaagcaatgaacaatgaatctaacccaca 195  Q
    |||||||||| || ||||||||||||||||||| ||||  || ||||||| |||    ||||||||||||||| || | ||||| ||||| |||||||||    
T  30518358 tttcccactagag-cctctctcattgtaatcatagcccttttctttctacattc----agcaaaacagctgaaggcgaagaacagtgaatataacccaca 30518264  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 30482888 - 30482822
Alignment:
Q  111 cctctctcattgtaatcatcgccccatt-tttctaccttcagcaagcaaaacagctgaaagcaatgaacaa 180  Q
    ||||||||||| ||||||||||||| || |||  ||||||    |||||||||||||||||||||||||||    
T  30482888 cctctctcattataatcatcgcccctttcttttcaccttc----agcaaaacagctgaaagcaatgaacaa 30482822  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 201
Target Start/End: Complemental strand, 30487215 - 30487088
Alignment:
Q  69 gattatgattttccgattaaattgggtgtttcccactacagacctctctcattgtaatcatcgccccatt-tttctaccttcagcaagcaaaacagctga 167  Q
    |||| |||||||| |||| |||||| | |||||||||| || ||||||||||||||||||| ||||  || ||||||| |||    ||||||| ||||||    
T  30487215 gattctgattttctgattgaattgg-tatttcccactaaag-cctctctcattgtaatcatagcccttttctttctacattc----agcaaaatagctga 30487122  T
Q  168 aagcaatgaacaatgaatctaacccacacttata 201  Q
    |  ||| ||||| ||||| |||||||| ||||||    
T  30487121 agacaaagaacagtgaatataacccacgcttata 30487088  T

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Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 30 - 134
Target Start/End: Original strand, 16933356 - 16933460
Alignment:
Q  30 attgataaatggagagaatcctaactctgatagaagttggattatgattttccgattaaattgggtgtttcccactacagacctctctcattgtaatcat 129  Q
    |||||||||||||||  |||||||||| |||||||||||| || |||||| |||||| |||||||| |||||||||| ||||||||||| || |||||||    
T  16933356 attgataaatggagaagatcctaactccgatagaagttgggttctgatttcccgattgaattgggtatttcccactaaagacctctctctttttaatcat 16933455  T
Q  130 cgccc 134  Q
     ||||    
T  16933456 tgccc 16933460  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 195
Target Start/End: Complemental strand, 38510513 - 38510378
Alignment:
Q  57 tgatagaagttggattatgattttccgattaaattgggtgtttcccactacagacctctctcattgtaatcatcgccccattttt-ctaccttcagcaag 155  Q
    |||||||| |||| || ||||||| | ||  |||||||| |||||||||  || ||||||||||| ||||||| ||||| ||||| || |||||    ||    
T  38510513 tgatagaaattgggttgtgattttgcaatggaattgggtatttcccactcgaggcctctctcattctaatcattgccccgtttttcctgccttc----ag 38510418  T
Q  156 caaaacagctgaaagcaatgaacaatgaatctaacccaca 195  Q
    ||||||| ||| | |||| |||||||| ||||||||||||    
T  38510417 caaaacaactgtaggcaaggaacaatggatctaacccaca 38510378  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 135
Target Start/End: Complemental strand, 29265262 - 29265219
Alignment:
Q  92 gggtgtttcccactacagacctctctcattgtaatcatcgcccc 135  Q
    |||| |||||||||| || |||||||||||||||||||||||||    
T  29265262 gggtatttcccactaaaggcctctctcattgtaatcatcgcccc 29265219  T

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