View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5433-Insertion-2 (Length: 1060)

Name: NF5433-Insertion-2
Description: NF5433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5433-Insertion-2
NF5433-Insertion-2
[»] chr3 (26 HSPs)
chr3 (7-653)||(678900-679546)
chr3 (67-549)||(750811-751290)
chr3 (557-1044)||(749673-750174)
chr3 (646-1044)||(675077-675485)
chr3 (69-542)||(2632504-2632953)
chr3 (387-549)||(9564654-9564816)
chr3 (331-541)||(7317339-7317545)
chr3 (402-526)||(667951-668075)
chr3 (270-360)||(9564819-9564909)
chr3 (445-541)||(2642522-2642618)
chr3 (7-69)||(747402-747464)
chr3 (427-508)||(7339748-7339829)
chr3 (733-792)||(2485200-2485259)
chr3 (615-676)||(1429705-1429766)
chr3 (739-822)||(2495517-2495597)
chr3 (13-62)||(7324687-7324736)
chr3 (9-65)||(9594898-9594954)
chr3 (448-526)||(2650058-2650136)
chr3 (13-62)||(9566094-9566143)
chr3 (762-806)||(2634006-2634049)
chr3 (733-806)||(2641879-2641950)
chr3 (733-806)||(2649372-2649443)
chr3 (633-675)||(7332267-7332309)
chr3 (9-54)||(754888-754933)
chr3 (13-62)||(2476377-2476426)
chr3 (734-775)||(7332157-7332198)
[»] scaffold0019 (2 HSPs)
scaffold0019 (557-822)||(2001-2270)
scaffold0019 (328-526)||(1360-1554)


Alignment Details
Target: chr3 (Bit Score: 606; Significance: 0; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 7 - 653
Target Start/End: Complemental strand, 679546 - 678900
Alignment:
Q  7 aggtttgtgttaatactttgggggatgattattggacaagaatagagggcatcccacattatttcaattctccaaaccctgcagttctaaaatcagcgca 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679546 aggtttgtgttaatactttgggggatgattattggacaagaatagagggcatcccacattatttcaattctccaaaccctgcagttctaaaatcagcgca 679447  T
Q  107 ctatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatcatatacttcacatgtgtataaagaattcacaacatttagc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679446 ctatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatcatatacttcacatgtgtataaagaattcacaacatttagc 679347  T
Q  207 tttctaaaacttatagtgagtttgaaatatagttatatgcctcattttcannnnnnnnnnnctttctagttcttagaattagaagaatgctgcgtatatt 306  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||           |||||||||||| ||||||||||||||||||||||||||    
T  679346 tttctaaaacttatagtgagtttgaaatgtagttatatgcctcattttcatttttttttttctttctagttctgagaattagaagaatgctgcgtatatt 679247  T
Q  307 tgagtattttcctagacaggtaaaaggtgaggttgttaacagaatgtcaacatgtttatccttatatatgagtgcttgggtatgtggcttagtgctcatc 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679246 tgagtattttcctagacaggtaaaaggtgaggttgttaacagaatgtcaacatgtttatccttatatatgagtgcttgggtatgtggcttagtgctcatc 679147  T
Q  407 ctagtcgactgctctatagggcttcccaccatacatgttagtcatcaattttctaaagaaattaacatgttattattctcgtggtaactttatgtgttgt 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679146 ctagtcgactgctctatagggcttcccaccatacatgttagtcatcaattttctaaagaaattaacatgttattattctcgtggtaactttatgtgttgt 679047  T
Q  507 tagtgctaaattaatcatattgtacattaagttttatattttgtacaggatttctcagcaagtgatcttgtacaggatttcttgtgtgggacaattaaga 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679046 tagtgctaaattaatcatattgtacattaagttttatattttgtacaggatttctcagcaagtgatcttgtacaggatttcttgtgtgggacaattaaga 678947  T
Q  607 tcacacgatcttacgatttgaatcgagattttgataaccttgatagt 653  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  678946 tcacacgatcttacgatttgaatcgagattttgataaccttgatagt 678900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 67 - 549
Target Start/End: Complemental strand, 751290 - 750811
Alignment:
Q  67 atttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatc 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  751290 atttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatc 751191  T
Q  167 atatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttatatgcctcattttcannnnnnnnnn 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||              
T  751190 atatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttctatgcctcattttcatttattttt- 751092  T
Q  267 nctttctagttcttagaattagaagaatgctgcgtatatttgagtattttcctagacaggtaaaaggtgaggttgttaacagaatgtcaacatgtttatc 366  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  751091 --tttctagttcttagaattagaagaatgctgcgtatatttgagtattttcctagacaggtaaaaggtgaggttgttaacagaatgtcaacatgtttatc 750994  T
Q  367 cttatatatgagtgcttgggtatgtggcttagtgctcatcctagtcgactgctctatagggcttcccaccatacatgttagtcatcaattttctaaagaa 466  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  750993 cttatatatgagtgcttgggtatgtggcttagtgctcatcctagtcgactgctctatagggcttcccaccatacatgttagtcatcaattttctaaagaa 750894  T
Q  467 attaacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaatcatattgtacattaagttttatattttg 549  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  750893 attaacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaatcatattgtacattaagttttatattttg 750811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 557 - 1044
Target Start/End: Complemental strand, 750174 - 749673
Alignment:
Q  557 tttctcagcaagtgatcttgtacaggatttcttgtgtgggacaattaagatcacacgatcttacgatttgaatcgagatttt-gataaccttgatagtat 655  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  750174 tttctcagcaagtgatcttgtacaggatttcttgtgtgggacaattaagatcacacgatcttacgatttgaatcgagatttttgataaccttgatagtat 750075  T
Q  656 gcacaaattcaaatcgacaataaacattaaagtttttatgttttagcttttgtttgggatagtgggtaacggtctaccaagataactgattattcttgtt 755  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  750074 gcacaaattcaaattgacaataaccattaaagtttttatgttttagcttttgtttgtgatagtgggtaacggtcta-caagataactgattattcttgtt 749976  T
Q  756 gaatgattaatgtgaaaatgaaagttttgaatattttggtattttatttgcga-ggttttaaagttgtgaaaatgatattattgaattcttcttacacac 854  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  749975 gaatgattaatgtgaaaatgaaagttttgaatattttggtattttatttgcgagggttttaaagttgtgaaaatgatattattgaattcttcttacacac 749876  T
Q  855 acgtaacaccattgtaacatttcataaca--------------tggatatgattgatatagtgcctgagattgtagtggaatttgtttcacaatgtggtt 940  Q
    |||||||| |||||| ||| |||||||||              ||||||||||||||||||||||||||||||||||| | ||||||||   |||| |||    
T  749875 acgtaaca-cattgt-acaattcataacattggtgaaatgacgtggatatgattgatatagtgcctgagattgtagtgaattttgtttccacatgt-gtt 749779  T
Q  941 gcattatattgtctc-atattttaa-ttttgcgtgcacctcaagcttc-aaatagacttataacttcctaagttggaatgtcctctttttcagg-tggtc 1036  Q
    || |||||||||||| ||||||||| ||||| |||||||||||||||| |||||||||||||||||| | ||||| ||||| |||||||||||| |||||    
T  749778 gccttatattgtctcaatattttaatttttgtgtgcacctcaagcttcaaaatagacttataacttcgt-agttgaaatgt-ctctttttcaggttggtc 749681  T
Q  1037 gtgtttgt 1044  Q
    ||||||||    
T  749680 gtgtttgt 749673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 217; E-Value: 1e-118
Query Start/End: Original strand, 646 - 1044
Target Start/End: Complemental strand, 675485 - 675077
Alignment:
Q  646 ttgatagtatgcacaaattcaaatcgacaataaacattaaagtttttatgttttagcttttgtttgggatagtgggtaacggtctaccaagataactgat 745  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||    
T  675485 ttgatagtatgcacaaattcaaattgacaataaacattaaagtttttatgttttagcttttgtttgtgatagtgggtaacagtctac-aagataactgat 675387  T
Q  746 tattcttgttgaatgattaatgtgaaaatgaaagttttgaatattttggtattttatttgcga-ggttttaaagttgtgaaaatgatattattgaattct 844  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||   |    
T  675386 tattcttgttgaatgattaatgtgaaaatgaaagttttgaatattttggtattttatttgcgagggttttaaagttgtgaaaatgatattattgaa---t 675290  T
Q  845 tcttacacacacgtaacaccattgtaacatttcataaca--------------tggatatgattgatatagtgcctgagattgtagtggaatttgtttca 930  Q
    |||||||||||||||||| |||||| ||| |||||||||              ||||||||||||||||||||||||||||||||||| | ||||||||     
T  675289 tcttacacacacgtaaca-cattgt-acaattcataacattggtgaaatgacgtggatatgattgatatagtgcctgagattgtagtgaattttgtttcc 675192  T
Q  931 caatgtggttgcattatattgtctc-atattttaa-ttttgcgtgcacctcaagcttc-aaatagacttataacttcctaagttggaatgtcctcttttt 1027  Q
      |||| ||||| |||||||||||| ||||||||| ||||| |||||||||||||||| |||||||||||||||||| | ||||| ||||| ||||||||    
T  675191 acatgt-gttgccttatattgtctcaatattttaatttttgtgtgcacctcaagcttcaaaatagacttataacttcgt-agttgaaatgt-ctcttttt 675095  T
Q  1028 cagg-tggtcgtgtttgt 1044  Q
    |||| |||||||||||||    
T  675094 caggttggtcgtgtttgt 675077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 69 - 542
Target Start/End: Original strand, 2632504 - 2632953
Alignment:
Q  69 ttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagat----tctttcaacacttgctcttttgattatcatagta 164  Q
    |||||||||||||||||||||||| |||||||||| || |    |||||||||||||||| |    ||||||| |||| | |||||  |||||||||||     
T  2632504 ttcaattctccaaaccctgcagttttaaaatcagcacatt----gttttgtgaagatcaggtcttttctttcaccactcgttctttgtattatcatagt- 2632598  T
Q  165 tcatatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttatatgcctcattttcannnnnnnn 264  Q
     |||| ||||||||||||| | || |||||| |   ||||||||| | ||||||||||||||||| || |  | || |||||||| ||||||            
T  2632599 -catacacttcacatgtgtgtgaataattcata---tttagctttttgaaacttatagtgagttttaa-tgcaattctatgcctcgttttcatt------ 2632687  T
Q  265 nnnctttctagttcttagaattagaagaatgctgcgtatatttgagtattttcctagacaggtaaaaggtgaggttgttaacagaatgtcaacatgttta 364  Q
        ||||| ||| | |||||||||||||||||||  ||||||||||||||||| ||| |   |||||||||||||||||||||||||  ||||||||||    
T  2632688 ----tttcttgttttgagaattagaagaatgctgc--atatttgagtattttccaagataatgaaaaggtgaggttgttaacagaatggaaacatgttta 2632781  T
Q  365 tccttatatatgagtgcttgggtatgtggcttagtgctcatcctagtcgactgctctatagggcttcccaccatacatgttagtcatcaattttctaaag 464  Q
    |||||      |||||||||||||||||||||||||||||| ||||| ||||||||| ||| ||||||| |||||||||||||||||||||||| ||||     
T  2632782 tccttgc----gagtgcttgggtatgtggcttagtgctcattctagttgactgctctgtagagcttccc-ccatacatgttagtcatcaattttttaaac 2632876  T
Q  465 aaattaacatg-ttattattctcgtggtaactttatgtgttgttagtgctaaattaatcatattgtacattaagtttta 542  Q
    ||||||||||| |||||| | || |||||||||  ||||||| ||||||| |||||||||||||||||||| |||||||    
T  2632877 aaattaacatgtttattaatttcttggtaactt--tgtgttgctagtgctgaattaatcatattgtacattcagtttta 2632953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 387 - 549
Target Start/End: Complemental strand, 9564816 - 9564654
Alignment:
Q  387 tatgtggcttagtgctcatcctagtcgactgctctatagggcttcccaccatacatgttagtcatcaattttctaaagaaattaacatgttattattctc 486  Q
    |||||||||||||| |||||||||| ||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||| |||||| | ||    
T  9564816 tatgtggcttagtgttcatcctagttgactgctctatagagcttccctccatacatgttagtcataaattttctaaagaaattaacattttattaatttc 9564717  T
Q  487 gtggtaactttatgtgttgttagtgctaaattaatcatattgtacattaagttttatattttg 549  Q
     ||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||    
T  9564716 ttgggaactttatgtgttgttaatgctaaattaatcatatagtacaataagttttttattttg 9564654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 331 - 541
Target Start/End: Complemental strand, 7317545 - 7317339
Alignment:
Q  331 aggtgaggttgttaacagaatgtcaacatgtttatccttatatatgagtgcttgggtatgtggcttagtgctcatcctagtcgactgctctatagggctt 430  Q
    ||||||||||||||||||||| |||||||||||||| ||||     ||||||||| || ||| |||||| ||||||||||| | | ||||| ||   |||    
T  7317545 aggtgaggttgttaacagaatatcaacatgtttatcattatc----agtgcttggataggtgacttagtactcatcctagttgcccgctctgtacaactt 7317450  T
Q  431 cccaccatacatgttagtcatcaattttctaaagaaattaacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaatcatattgta 530  Q
    ||| | || |||||||||||||||| |||||||||| |||||||||||||| | || ||| |||||||||||||  ||||||| || ||||||||| |||    
T  7317449 ccctctattcatgttagtcatcaatcttctaaagaatttaacatgttattaatttcttggcaactttatgtgtttctagtgctgaaataatcatatagta 7317350  T
Q  531 cattaagtttt 541  Q
     ||| ||||||    
T  7317349 tattcagtttt 7317339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 402 - 526
Target Start/End: Complemental strand, 668075 - 667951
Alignment:
Q  402 tcatcctagtcgactgctctatagggcttcccaccatacatgttagtcatcaattttctaaagaaattaacatgttattattctcgtggtaactttatgt 501  Q
    ||||||||||   ||||||| ||| ||||||| ||||||||||||||||||||||||||||| || ||||||| |||||| | || ||| || |||||||    
T  668075 tcatcctagtttcctgctctgtagagcttccctccatacatgttagtcatcaattttctaaacaatttaacattttattaatttcttggcaattttatgt 667976  T
Q  502 gttgttagtgctaaattaatcatat 526  Q
    |||||||||||| || |||||||||    
T  667975 gttgttagtgctgaaataatcatat 667951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 270 - 360
Target Start/End: Complemental strand, 9564909 - 9564819
Alignment:
Q  270 ttctagttcttagaattagaagaatgctgcgtatatttgagtattttcctagacaggtaaaaggtgaggttgttaacagaatgtcaacatg 360  Q
    |||| ||||| ||||||||||||||||||  | |||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||    
T  9564909 ttctggttctgagaattagaagaatgctgtatgtatttgagtattttccaagacagtgaaaaggtgaggttgttaacagaatgtcaacatg 9564819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 445 - 541
Target Start/End: Complemental strand, 2642618 - 2642522
Alignment:
Q  445 tagtcatcaattttctaaagaaattaacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaatcatattgtacattaagtttt 541  Q
    ||||||| | ||||||||||||||||||||||||||| | || ||||||||||||   ||| ||||||| |||||||||||| ||||||| ||||||    
T  2642618 tagtcattagttttctaaagaaattaacatgttattaatttcttggtaactttattccttgctagtgctgaattaatcatatagtacattcagtttt 2642522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 747464 - 747402
Alignment:
Q  7 aggtttgtgttaatactttgggggatgattattggacaagaatagagggcatcccacattatt 69  Q
    |||||| | ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  747464 aggttttttttaatactttgggggctgattattggaaaagaatagagggcatcccacattatt 747402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 427 - 508
Target Start/End: Complemental strand, 7339829 - 7339748
Alignment:
Q  427 gcttcccaccatacatgttagtcatcaattttctaaagaaattaacatgttattattctcgtggtaactttatgtgttgtta 508  Q
    ||||||| |||||||| |||||||||||||||||||||||| |||||| |||||| | || |  ||||||||||||||||||    
T  7339829 gcttccctccatacatattagtcatcaattttctaaagaaagtaacattttattaatttcttattaactttatgtgttgtta 7339748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 733 - 792
Target Start/End: Original strand, 2485200 - 2485259
Alignment:
Q  733 caagataactgattattcttgttgaatgattaatgtgaaaatgaaagttttgaatatttt 792  Q
    |||||||||||||||||||||||||||| ||||||  ||||||||||||||| |||||||    
T  2485200 caagataactgattattcttgttgaatgtttaatgcaaaaatgaaagttttgtatatttt 2485259  T

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Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 615 - 676
Target Start/End: Complemental strand, 1429766 - 1429705
Alignment:
Q  615 tcttacgatttgaatcgagattttgataaccttgatagtatgcacaaattcaaatcgacaat 676  Q
    ||||||||||| ||||| |||||||| ||||||||||  |||||||||||||||| ||||||    
T  1429766 tcttacgatttaaatcgtgattttgaaaaccttgatatcatgcacaaattcaaattgacaat 1429705  T

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Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 739 - 822
Target Start/End: Original strand, 2495517 - 2495597
Alignment:
Q  739 aactgattattcttgttgaatgattaatgtgaaaatgaaagttttgaatattttggtattttatttgcgaggttttaaagttgt 822  Q
    |||||||||||||||   ||||||||||||||||| |||||||||| ||||||| |  ||||||||||   |||||||||||||    
T  2495517 aactgattattcttg---aatgattaatgtgaaaacgaaagttttgtatattttagacttttatttgcagtgttttaaagttgt 2495597  T

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Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 7324736 - 7324687
Alignment:
Q  13 gtgttaatactttgggggatgattattggacaagaatagagggcatccca 62  Q
    |||||||||||||||||  ||||||||||||||||||||||| |||||||    
T  7324736 gtgttaatactttggggactgattattggacaagaatagaggacatccca 7324687  T

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Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 9594954 - 9594898
Alignment:
Q  9 gtttgtgttaatactttgggggatgattattggacaagaatagagggcatcccacat 65  Q
    |||| |||| |||||||||||  ||||||||||||||||||||||| ||||||||||    
T  9594954 gtttttgtttatactttggggactgattattggacaagaatagaggacatcccacat 9594898  T

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Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 448 - 526
Target Start/End: Complemental strand, 2650136 - 2650058
Alignment:
Q  448 tcatcaattttctaaagaaattaacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaatcatat 526  Q
    ||||||||||||||||||| || ||||||||||| | || |||||||||||||  ||| | ||||| |||| |||||||    
T  2650136 tcatcaattttctaaagaagtttacatgttattaatttcttggtaactttatgccttgctggtgcttaatttatcatat 2650058  T

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Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 9566143 - 9566094
Alignment:
Q  13 gtgttaatactttgggggatgattattggacaagaatagagggcatccca 62  Q
    ||||| |||||||||||  ||||||||||||||||||||||| |||||||    
T  9566143 gtgtttatactttggggactgattattggacaagaatagaggacatccca 9566094  T

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Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 762 - 806
Target Start/End: Original strand, 2634006 - 2634049
Alignment:
Q  762 ttaatgtgaaaatgaaagttttgaatattttggtattttatttgc 806  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||    
T  2634006 ttaatgtgaaaatgaaagttttgtata-tttggtattttatttgc 2634049  T

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Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 733 - 806
Target Start/End: Complemental strand, 2641950 - 2641879
Alignment:
Q  733 caagataactgattattcttgttgaatgattaatgtgaaaatgaaagttttgaatattttggtattttatttgc 806  Q
    ||||||||| | || ||||||||||||||||||| ||||||||||  ||||  |||||||||| ||| ||||||    
T  2641950 caagataacggtttcttcttgttgaatgattaatctgaaaatgaa--ttttttatattttggtgtttcatttgc 2641879  T

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Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 733 - 806
Target Start/End: Complemental strand, 2649443 - 2649372
Alignment:
Q  733 caagataactgattattcttgttgaatgattaatgtgaaaatgaaagttttgaatattttggtattttatttgc 806  Q
    ||||||||| | || ||||||||||||||||||| ||||||||||  ||||  |||||||||| ||| ||||||    
T  2649443 caagataacggtttcttcttgttgaatgattaatctgaaaatgaa--ttttttatattttggtgtttcatttgc 2649372  T

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Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 633 - 675
Target Start/End: Complemental strand, 7332309 - 7332267
Alignment:
Q  633 gattttgataaccttgatagtatgcacaaattcaaatcgacaa 675  Q
    ||||||| ||||||||||||||||||| ||||||||| |||||    
T  7332309 gattttggtaaccttgatagtatgcactaattcaaattgacaa 7332267  T

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Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 754933 - 754888
Alignment:
Q  9 gtttgtgttaatactttgggggatgattattggacaagaatagagg 54  Q
    ||||||||| |||| ||||||  |||||||||||||||||||||||    
T  754933 gtttgtgtttatacattggggactgattattggacaagaatagagg 754888  T

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Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 2476377 - 2476426
Alignment:
Q  13 gtgttaatactttgggggatgattattggacaagaatagagggcatccca 62  Q
    |||||||||||||||||  ||||||||||||||||||  ||| |||||||    
T  2476377 gtgttaatactttggggactgattattggacaagaatgcaggacatccca 2476426  T

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Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 734 - 775
Target Start/End: Complemental strand, 7332198 - 7332157
Alignment:
Q  734 aagataactgattattcttgttgaatgattaatgtgaaaatg 775  Q
    |||||||||| ||||||||||| |||||||||| ||||||||    
T  7332198 aagataactgtttattcttgttaaatgattaatctgaaaatg 7332157  T

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Target: scaffold0019 (Bit Score: 80; Significance: 6e-37; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 557 - 822
Target Start/End: Original strand, 2001 - 2270
Alignment:
Q  557 tttctcagcaagtgatcttgtacaggatttcttgtgtgggacaattaagatcacacgatcttacgatttgaatcgagattttgataaccttgatagtatg 656  Q
    |||| |||||| |||| |||||  |||| | ||||| ||||| ||||||||| || |||||||| |||| ||||| || |||||||||| ||||||||||    
T  2001 tttcacagcaaatgattttgtattggatctattgtgggggaccattaagatcgcatgatcttacaatttaaatcgtgactttgataaccctgatagtatg 2100  T
Q  657 cacaaattcaaatcgacaataaacat--taaagttttt-atgttttagcttttgtttgg-gatagtgggtaacggtctaccaagataactgattattctt 752  Q
    |||| |||||| |  ||||| | |||  ||  |||||| ||||||||||| ||| ||   |||||||  ||| ||  ||| |||||||||||||||||||    
T  2101 cacagattcaagttaacaatgatcatcttatggttttttatgttttagctcttgcttcttgatagtgtttaatggattac-aagataactgattattctt 2199  T
Q  753 gttgaatgattaatgtgaaaatgaaagttttgaatattttggtattttatttgcga-ggttttaaagttgt 822  Q
    |||||||||||||||| ||||||||||||||| |||||||||| |||||||||| | ||||||||||||||    
T  2200 gttgaatgattaatgtcaaaatgaaagttttgtatattttggtcttttatttgcaagggttttaaagttgt 2270  T

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Target: scaffold0019; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 328 - 526
Target Start/End: Original strand, 1360 - 1554
Alignment:
Q  328 aaaaggtgaggttgttaacagaatgtcaacatgtttatccttatatatgagtgcttgggtatgtggcttagtgctcatcctagtc-gactgctctatagg 426  Q
    |||||||| ||||||||||||||||||||||| |||||| |||     | || ||||  |||||||||||||||||||||||||  | |  || | |||     
T  1360 aaaaggtgtggttgttaacagaatgtcaacatatttatcattac----gggtacttgcatatgtggcttagtgctcatcctagtttgcccactttctaga 1455  T
Q  427 gcttcccaccatacatgttagtcatcaattttctaaagaaattaacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaatcatat 526  Q
    ||||||| | |||| ||||||| ||||||||||||||||| ||||||| |||||| | || ||||||||| || |||| ||| |||  ||||||||||||    
T  1456 gcttccctctatacctgttagtaatcaattttctaaagaatttaacatattattaatttcttggtaacttcatatgtt-ttattgcggaattaatcatat 1554  T

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