View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5433-Insertion-4 (Length: 794)
Name: NF5433-Insertion-4
Description: NF5433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5433-Insertion-4 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 453; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 278 - 794
Target Start/End: Complemental strand, 13726690 - 13726175
Alignment:
| Q |
278 |
tgccacaccacattaggaaaaggtctaaatcctacatggaaaggtcacaatcaattgatgctttgcaatcttttttgttcaatggattcattgattagaa |
377 |
Q |
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| T |
13726690 |
tgccacaccacattaggaaaaggtcaaaatcctacatggaaaggtcacaatcacttgatgctttgctatcttttttgttcaatgcattcattgattagaa |
13726591 |
T |
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| Q |
378 |
tatcattatgtctattacttttacacccttcttcatatataaacacattccagaagaaaagagacaccacaaaaatcaatggagaataaaagcaaaaaac |
477 |
Q |
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| T |
13726590 |
tatcattatgtctattacttttacacccttcttcatatataaacacattccagaagaaaagagacaccacaaaaatcaatggagaataaaagcaaaaaac |
13726491 |
T |
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| Q |
478 |
atgcaccacacatcttagtgttaccgtatccattacaaggccacataaaccctatgcgtcaattctcaaaacgtttatcccaaaatggagtaaaaatcac |
577 |
Q |
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| T |
13726490 |
atgcaccacacatcttagtgtttccatatccattacaaggtcacataaaccctatgcttcaattctcgaaacgtttatcccaaaaaggagtaaaaataac |
13726391 |
T |
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| Q |
578 |
actagtgaacaccatttccatttggaacaaaatcaacaacaacattgatctaaattcaattcaaactgaaagcatttcagatggttatgacaatggagga |
677 |
Q |
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| T |
13726390 |
actagtgaacaccatttccatttggaacaaaatcaacaacaacattgatctcaattcaattgaaactgaaagcatttcagatggttatgacaatggagga |
13726291 |
T |
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| Q |
678 |
atgtcatcagcagaaaatatggaatcttacaaagacactttctggaaagttggaccaaaatcactttctcagcttcttcataaacttcaaagttcaaaca |
777 |
Q |
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| T |
13726290 |
atgtcatcagcagaaaacatggaatcttacaaagacactttctggaaagttggaccaaaatcactttctcagcttcttcataaacttcaaagttcaaaca |
13726191 |
T |
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| Q |
778 |
accctggttgattgtgt |
794 |
Q |
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| T |
13726190 |
accct-gttgattgtgt |
13726175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 13727204 - 13726980
Alignment:
| Q |
16 |
attatatcttctattaatattgaattagctttaacgtgaagtttattaggcaacaaacaaacacacttgctcatagtcttgctacggcgacctgttcttg |
115 |
Q |
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| T |
13727204 |
attatatcttctattaatattgaattagctttaacgtgaagtttattaggcaacaaacaaacacgcttgctcatagtcttgctacggcgacctgttcttg |
13727105 |
T |
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| Q |
116 |
gtcttgtccccat-atttttgagaattatcctccttgtattgaacatcttttgctacaatat-nnnnnnntttccccaagttggcattgttgttcttcct |
213 |
Q |
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| T |
13727104 |
gtcttgtcaccgtaatttttgagaattatcctccttgtattgaacatcttttgctacaatataaaaaaagtttccccaagttggcattgttgtccttcct |
13727005 |
T |
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| Q |
214 |
tctattgaaatgctcgatgttggtg |
238 |
Q |
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| T |
13727004 |
tctattgaaatgctcgatgttggtg |
13726980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 512 - 592
Target Start/End: Complemental strand, 13697432 - 13697352
Alignment:
| Q |
512 |
acaaggccacataaaccctatgcgtcaattctcaaaacgtttatcccaaaatggagtaaaaatcacactagtgaacaccat |
592 |
Q |
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| T |
13697432 |
acaaggtcacataaacccaatgcttcaattctcaaaacgtttactccaaaaaggactaaaagtcacactagtaaacaccat |
13697352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 498 - 554
Target Start/End: Original strand, 13686360 - 13686416
Alignment:
| Q |
498 |
ttaccgtatccattacaaggccacataaaccctatgcgtcaattctcaaaacgttta |
554 |
Q |
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| T |
13686360 |
ttaccttatccagcacaaggccacatgaaccctatgattcaattctcaaaacgttta |
13686416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 49525120 - 49525056
Alignment:
| Q |
93 |
cttgctacggcgacctgttcttggtcttgtccccatatttttgagaattatcctccttgtattga |
157 |
Q |
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| T |
49525120 |
cttgctagggcggtctgttcttggactagtcaccatatttttgagatttgtcctccttgtattga |
49525056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 8670279 - 8670176
Alignment:
| Q |
54 |
aagtttattaggcaacaaacaaacacacttgctcatagtcttgctacggcgacctgttcttggtcttgtccccatatttttgagaattatcctccttgta |
153 |
Q |
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| T |
8670279 |
aagtttgttaggcgacaaacaaacatggttgctcacactcttactagggcggcctgttcttggactagtcaccgtatctttgagatttgtcttccttgta |
8670180 |
T |
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| Q |
154 |
ttga |
157 |
Q |
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|||| |
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| T |
8670179 |
ttga |
8670176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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