View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5433-Insertion-5 (Length: 690)
Name: NF5433-Insertion-5
Description: NF5433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5433-Insertion-5 |
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| [»] chr5 (8 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 519; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 7 - 690
Target Start/End: Complemental strand, 32266481 - 32265808
Alignment:
| Q |
7 |
aaatgatatgttcatttccaattgcaacatgtttcttctattcatataagaaattatgtcttttcattgcttagttatcctaattcaaaacaaaattggt |
106 |
Q |
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| T |
32266481 |
aaatgatatgttcatttccaattgcaacatgtttcttctattcatataagaaattatgtcttttcattgcttagttatcctaattcaaaacaaaattggt |
32266382 |
T |
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| Q |
107 |
cttaataagacaatttcccaaacagaaggaaagctttaagactttcaatacagggaacaatttttataaaacaaatatttcatataaatctataaacatg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32266381 |
cttaataagacaatttcccaaacagaaggaaagctttaagactttcaatacagggaacaatttttataaaacaaatctttcatataaatctataaacatg |
32266282 |
T |
|
| Q |
207 |
agtgaaaacagtgtgaagaaacnnnnnnnnnnnncaaagatcaggttgaatgtaatctatgtgataaataagcatataataatgatgcttaattgcaaaa |
306 |
Q |
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| T |
32266281 |
agtgaaaacagtgtgaagaaacaaaaaaaaaa--caaagatcaggttgaatgtaatctatgtgataaataagcatataataatgatgcttaattgcaaaa |
32266184 |
T |
|
| Q |
307 |
ttctcagtttatgccagagggagaatgtttcttatgcaaatgcaacaaaataaaaacataaccaagagtaaaatgcatatgagtatcaacataaccacta |
406 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32266183 |
ttctcagtttatgccagagggagaatgtttctgatgcaaatgcaacaaaataaaaacataaccaagagtaaaatgcatatgagtatcaacataaccacta |
32266084 |
T |
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| Q |
407 |
attttctcccaaaaatttattgtaattttttgatcaaggaaataaaataagagtgactaatgaatcaagaaggatttgtttgatatttgctcaattaggt |
506 |
Q |
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| T |
32266083 |
a-tttctcccaatttttttttgtaattttttgatcaaggaaataaaataagagtgtctaatgaatcaagaaggatttgtttgatatttgctcaattaggt |
32265985 |
T |
|
| Q |
507 |
ttaactttcaacaaagactaaattgagaaaacccgaagcatttcttctctattcttgtttagagttgacaatttctagtcctcacacaatnnnnnnnnnn |
606 |
Q |
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|||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| | |
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| T |
32265984 |
ttaacttttaacaaagactaaattgagaaaa-ccgaagcatttcttctcaattcttgtttagagttgacaatttctagt-ctcacacagt-----aaaaa |
32265892 |
T |
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| Q |
607 |
nnnnnnncatttttcatttgccgtttttcgtttcaccttcaaggttatgattactttccttccatagaattatacagttctgct |
690 |
Q |
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| T |
32265891 |
aaaaacacatttttcatttgccgtttttcgtttcaccttcaaggttatgattactttccttccttagaattatacagttctgct |
32265808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 170 - 493
Target Start/End: Complemental strand, 32257501 - 32257188
Alignment:
| Q |
170 |
ttataaaacaaatatttcatataaatctataaacatgagtgaaaacagtg-tgaagaaacnnnnnnnnnnnncaaagatcaggttgaatgtaatctatgt |
268 |
Q |
| |
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|||||||| |||||||||||||||||| ||||| |||||| ||||||||| ||||||||| ||||||||| || |||||||||||||| |
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| T |
32257501 |
ttataaaaaaaatatttcatataaatcgataaaaatgagtaaaaacagtggtgaagaaaccaaaaacaat---aaagatcagtttaaatgtaatctatgt |
32257405 |
T |
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| Q |
269 |
gataaataagcatataataatgatgcttaattgcaaaattctcagtttatgccagagggagaatgtttcttatgcaaatgcaacaaaataaaaacataac |
368 |
Q |
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| T |
32257404 |
gataaataagcatataataatgatgcttaattgcaaaattctcagtttatgccagaggtagaa-------------aatgcaacaaaataaaagcataac |
32257318 |
T |
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| Q |
369 |
caagagtaaaatgcatatgagtatcaa----cataaccactaattttctcccaaaaatttattgtaattttttgatcaaggaaataaaat-aagagtgac |
463 |
Q |
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||||||||||| || |||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||| || |
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| T |
32257317 |
caagagtaaaaggcttatgagtatcaatcaacataaccactaatttcctcccaaaaatttatagtaattttttgatcaaggaaataaaataaagagtcac |
32257218 |
T |
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| Q |
464 |
taatgaatcaagaaggatttgtttgatatt |
493 |
Q |
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| T |
32257217 |
taatgaatcaagaaggatttgtttaatatt |
32257188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 180 - 459
Target Start/End: Complemental strand, 33179414 - 33179130
Alignment:
| Q |
180 |
aatatttcatataaa-tctataaacatgagtgaaaacagtgtgaagaaacnnnnnnnnnnnncaaagatcaggttgaatgtaatctatgtgataaataag |
278 |
Q |
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||||||||||||||| | ||||| ||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||| ||| |
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| T |
33179414 |
aatatttcatataaaatatataatgatgagtgaaaacagtgtgaagaaaccaaaaaaaataaaaaaaatcaggctgaatgtaatctatgtgatagatat- |
33179316 |
T |
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| Q |
279 |
catataataatgat-gcttaattgcaaaattctcagtttatgccagagggagaatgtttcttatgcaaatgcaa----caaaataaaaacataaccaaga |
373 |
Q |
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| T |
33179315 |
catataataacgattggttaattgcaaacttctcagtttatgccagagggagaatctttcttaatcaaattcaaatgacagaataaaagtataaccaaaa |
33179216 |
T |
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| Q |
374 |
gtaaaatgcatatgagtatcaacataaccactaattttctcccaaaaatttattgtaattttttgatcaaggaaataaaataagag |
459 |
Q |
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|||||| || ||| |||||||||||| |||||||| ||||| |||||| || ||||| ||||||| ||||||||||||| |||| |
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| T |
33179215 |
gtaaaaagcttatcagtatcaacatagccactaatcttctcacaaaaaatttcagtaatattttgataaaggaaataaaattagag |
33179130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 617 - 679
Target Start/End: Complemental strand, 33178795 - 33178733
Alignment:
| Q |
617 |
ttttcatttgccgtttttcgtttcaccttcaaggttatgattactttccttccatagaattat |
679 |
Q |
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|||| |||||| ||||| ||||||||||||| ||| ||||||||||||||||| ||||||||| |
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| T |
33178795 |
tttttatttgcagttttccgtttcaccttcacggtcatgattactttccttccttagaattat |
33178733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 499 - 555
Target Start/End: Complemental strand, 32257075 - 32257020
Alignment:
| Q |
499 |
aattaggtttaactttcaacaaagactaaattgagaaaacccgaagcatttcttctc |
555 |
Q |
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| T |
32257075 |
aattaggtttgactttcaacaaagactaaattgaggaaa-ccgaagcgtttcttctc |
32257020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 84 - 131
Target Start/End: Complemental strand, 32257598 - 32257551
Alignment:
| Q |
84 |
tcctaattcaaaacaaaattggtcttaataagacaatttcccaaacag |
131 |
Q |
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| T |
32257598 |
tcctaattcaaaacaaaattggtcgtaataagacaattttgcaaacag |
32257551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 32257912 - 32257869
Alignment:
| Q |
47 |
ttcatataagaaattatgtcttttcattgcttagttatcctaat |
90 |
Q |
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||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
32257912 |
ttcatataagaaattatgttttttcattgcttagttctcctaat |
32257869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 514 - 586
Target Start/End: Complemental strand, 33178884 - 33178813
Alignment:
| Q |
514 |
tcaacaaagactaaattgagaaaacccgaagcatttcttctctattcttgtttagagttgacaatttctagtc |
586 |
Q |
| |
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||||||||||||||||||| |||| ||| ||| ||||||||| |||| | || | |||||||||||| ||||| |
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| T |
33178884 |
tcaacaaagactaaattgacaaaa-ccggagcgtttcttctcaattcctcttcaaagttgacaatttgtagtc |
33178813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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