View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5433-Insertion-7 (Length: 162)

Name: NF5433-Insertion-7
Description: NF5433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5433-Insertion-7
NF5433-Insertion-7
[»] chr1 (9 HSPs)
chr1 (8-162)||(11009093-11009244)
chr1 (18-154)||(11034504-11034649)
chr1 (8-154)||(11003282-11003425)
chr1 (18-87)||(10921637-10921706)
chr1 (22-136)||(10905232-10905343)
chr1 (22-136)||(10975143-10975254)
chr1 (22-87)||(11000366-11000431)
chr1 (17-98)||(10987997-10988078)
chr1 (17-98)||(11019165-11019246)


Alignment Details
Target: chr1 (Bit Score: 141; Significance: 3e-74; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 3e-74
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 11009093 - 11009244
Alignment:
Q  8 gtttacaccgactgttgagccaagaaagttcaaatccataatacatcctacgacgaatgtctgtacaagaaatgttgttgatgttgccatcatcttcaac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11009093 gtttacaccgactgttgagccaagaaagttcaaatccataatacatcctacgacgaatgtctgtacaagaaatgttgttgatgttgccatcatcttcaac 11009192  T
Q  108 atcccaagaagtgagatacataaactctatatgacacccgtctcccaacccaaat 162  Q
    |||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  11009193 atccc---aagtgagatacataaactctatatgacacccgtctcccaacccaaat 11009244  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 11034504 - 11034649
Alignment:
Q  18 actgttgagccaagaaagttcaaatccataatacatcctacgacgaatgtctgtacaagaaatgttgttgatgttg---------ccatcatcttcaaca 108  Q
    ||||||||||||||||||||||||||||||| |||||  |||||| || || |  ||||||||||||||| |||||         |||||||||||||||    
T  11034504 actgttgagccaagaaagttcaaatccataaaacatctcacgacggatatccgcgcaagaaatgttgttgttgttgtgatcagcaccatcatcttcaaca 11034603  T
Q  109 tcccaagaagtgagatacataaactctatatgacacccgtctccca 154  Q
    ||| ||||||||||||||||||||| |||| ||||||| |||||||    
T  11034604 tccaaagaagtgagatacataaactgtatacgacacccatctccca 11034649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 8 - 154
Target Start/End: Complemental strand, 11003425 - 11003282
Alignment:
Q  8 gtttacaccgactgttgagccaagaaagttcaaatccataatacatcctacgacgaatgtctgtacaagaaatgttgttgatgttgccatcatcttcaac 107  Q
    |||||||  |||| |||||||| |||||||||||||||||| ||||| ||||| |||| || ||||||||||||||||   |||| ||| |||  | ||     
T  11003425 gtttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgatgaatatccgtacaagaaatgttgt---tgtttccaccatgcttaaa 11003329  T
Q  108 atcccaagaagtgagatacataaactctatatgacacccgtctccca 154  Q
    ||||||||| || ||| |||| ||||||||| ||||| | |||||||    
T  11003328 atcccaagatgtaagaaacatcaactctatacgacactcatctccca 11003282  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 10921637 - 10921706
Alignment:
Q  18 actgttgagccaagaaagttcaaatccataatacatcctacgacgaatgtctgtacaagaaatgttgttg 87  Q
    ||||||||||||||||||||||||||||||| | |||  |||||| |||||||| || ||||||||||||    
T  10921637 actgttgagccaagaaagttcaaatccataaaagatctcacgacggatgtctgtgcatgaaatgttgttg 10921706  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 10905232 - 10905343
Alignment:
Q  22 ttgagccaagaaagttcaaatccataatacatcctacgacgaatgtctgtacaagaaatgttgttgatgttgccatcatcttcaacatcccaagaagtga 121  Q
    ||||||||||||| ||||||||||||||||||| ||||||| | |||  | |||||||||||  || |||||   |||||||||| ||   |||| ||||    
T  10905232 ttgagccaagaaaattcaaatccataatacatcatacgacggaagtccttgcaagaaatgttactgttgttg---tcatcttcaaaatttaaagatgtga 10905328  T
Q  122 gatacataaactcta 136  Q
    |||||||||||||||    
T  10905329 gatacataaactcta 10905343  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 10975143 - 10975254
Alignment:
Q  22 ttgagccaagaaagttcaaatccataatacatcctacgacgaatgtctgtacaagaaatgttgttgatgttgccatcatcttcaacatcccaagaagtga 121  Q
    ||||||||||||| ||||||||||||||||||| ||||||| | |||  | |||||||||||  || ||||||||||   ||||| ||   |||| ||||    
T  10975143 ttgagccaagaaaattcaaatccataatacatcatacgacggaagtccttgcaagaaatgttactgttgttgccatc---ttcaaaatttaaagatgtga 10975239  T
Q  122 gatacataaactcta 136  Q
    |||||||||||||||    
T  10975240 gatacataaactcta 10975254  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 11000431 - 11000366
Alignment:
Q  22 ttgagccaagaaagttcaaatccataatacatcctacgacgaatgtctgtacaagaaatgttgttg 87  Q
    |||||||| |||||||||||||||||| ||||| |||||||||| || || ||| |||||||||||    
T  11000431 ttgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtgcaaaaaatgttgttg 11000366  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 10987997 - 10988078
Alignment:
Q  17 gactgttgagccaagaaagttcaaatccataatacatcctacgacgaatgtctgtacaagaaatgttgttgatgttgccatc 98  Q
    |||| ||||||||||| | ||||||||||||| ||||| ||||    ||||| || ||||||||||| ||| ||||||||||    
T  10987997 gactattgagccaagagacttcaaatccataagacatcatacggttgatgtccgtgcaagaaatgttattgttgttgccatc 10988078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 11019165 - 11019246
Alignment:
Q  17 gactgttgagccaagaaagttcaaatccataatacatcctacgacgaatgtctgtacaagaaatgttgttgatgttgccatc 98  Q
    |||| ||||||||||| | ||||||||||||| ||||| ||||    ||||| || ||||||||||| ||| ||||||||||    
T  11019165 gactattgagccaagagacttcaaatccataagacatcatacggttgatgtccgtgcaagaaatgttattgttgttgccatc 11019246  T

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