View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5433_low_2 (Length: 442)
Name: NF5433_low_2
Description: NF5433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5433_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 186 - 427
Target Start/End: Complemental strand, 13728903 - 13728662
Alignment:
| Q |
186 |
tgaaatcttaagtataatttaaaagttagaacaatttttggcattgaaatcttaaagggaaatcttaatttttgacattgatttcaaatttgtcagtaac |
285 |
Q |
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| T |
13728903 |
tgaaatctcaagaataatttaaaatctagaacaatttttggcattgaaatcttaaagggaaatcttaatttttgacattgatttcaaatttgtcagtaac |
13728804 |
T |
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| Q |
286 |
tacccaagtctagactcactcaaacccaaaccgctattggtttagctgctgataaaggatgggacaacaagatatttgagtcagattcccatactttggt |
385 |
Q |
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| T |
13728803 |
tacccaagtctagactcgctcaaacccaaaccgctattggtttagctgctgataaaggttgggacaacaagatatttgagtcagattcccatactttggt |
13728704 |
T |
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| Q |
386 |
acacactgttaggtccctcatcaaggagtttcatagttttat |
427 |
Q |
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| T |
13728703 |
acacactgttaggtccctcatcaaggagtttcataattttat |
13728662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 13729516 - 13729311
Alignment:
| Q |
1 |
catccgaagacaacgactcgcccatctatcacttgtaatagtcatatgtggaacacatgcaagtccaactttaaattcataactaaaaatattggaatat |
100 |
Q |
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| T |
13729516 |
catccgaagacaacgactcgcccatctatcacttgtaatagtcatatgtggaacacatgcaagtccaactttaaattcataactaaaaatattggaatat |
13729417 |
T |
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| Q |
101 |
gcatgacacggtggaaattagcttagatttaaaaagctcaaaaatctgtgttttacacaatgaaatctttatgacccaatcaaaatgaaatcttaagtat |
200 |
Q |
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| T |
13729416 |
gcatgacacggtggaaattagcttagatttaaaaagctcaaaaatctgtgttttacacaatgaaatctttatgaccaaatcaaaatgaaatcttaagtat |
13729317 |
T |
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| Q |
201 |
aattta |
206 |
Q |
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| T |
13729316 |
aattta |
13729311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 198 - 237
Target Start/End: Complemental strand, 13728935 - 13728896
Alignment:
| Q |
198 |
tataatttaaaagttagaacaatttttggcattgaaatct |
237 |
Q |
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| T |
13728935 |
tataatttaaaatttagaacaatttttggcattgaaatct |
13728896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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