View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5434-Insertion-5 (Length: 920)
Name: NF5434-Insertion-5
Description: NF5434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5434-Insertion-5 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 811; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 811; E-Value: 0
Query Start/End: Original strand, 21 - 920
Target Start/End: Original strand, 41776284 - 41777199
Alignment:
| Q |
21 |
gattttggtttgcagaatgatgtcaaggtctgcagtgtttggtattgggtccttttctccttacaggtatgtatgatataataacaccaatttcataagt |
120 |
Q |
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| T |
41776284 |
gattttggtttgcagaatgatgtcaaggtctgcagtgtttggtattgggtccttttctccttacaggtatgtatgatataataacaccaatttcataagt |
41776383 |
T |
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| Q |
121 |
acaatttgttgcttaacttatcatgtaatgatttgggcttgtgtggcctcaattgccaatttgccattgtgttgtggtcgcggaaacaacagaaaccatg |
220 |
Q |
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| T |
41776384 |
acaatttgttgcttaacttatcatgtaatgatttgggcttgtgtggcctcaattgccaatttgcccttgtcttgtggtcgcggaaacatcagaaaccatg |
41776483 |
T |
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| Q |
221 |
atgtcgcgttctaagtcatgcgatcaaggaccttttttaaaagaatactagcttattaccatgcatgtttttctttctgtttcagtttcctattgcacta |
320 |
Q |
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| T |
41776484 |
atgtcgcgttctaagtcgtgcgatcaaggaccttttttaaaagaatactagcttattaccatgcatgtatttctttctgtttcagtttcctattgcacta |
41776583 |
T |
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| Q |
321 |
gtggtattttggtatgaagcaatgaaattgtacaaggattacaagaagaggatgaatacaggaaacctggaatgtatatgtgaagcttcaattgaatgga |
420 |
Q |
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| T |
41776584 |
gtggtattttggtatgaagcaatgaaattgtacaaggattacaagaagaggatgaatacaggaaacctggaatgtatatgtgaagcttcaattgaatgga |
41776683 |
T |
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| Q |
421 |
ctgtgttgcacattgtgttttgtgcgctctgtggaatcttaggtgggaccgttggagggctacttggttctggaggtggattcattctgggccctcttct |
520 |
Q |
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| T |
41776684 |
ctgtgttgcacattgtgttttgtgcgctctgtggaatcttaggtgggaccgttggagggctacttggttctggaggtggattcattctgggccctcttct |
41776783 |
T |
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| Q |
521 |
cattgagatcggtgtcatccctcaggtacagtacatatagacataccctttcacatgcggattggattttgtg----------------cagtcacgcac |
604 |
Q |
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| T |
41776784 |
cattgagatcggtgtcatccctcaagtacagtatatatagacataccctttcacatgtggattggattttgtgcagtcacagtcccatacagtcacgcac |
41776883 |
T |
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| Q |
605 |
ctatctacatcggtggccattgaatcaagaatggacgtcaagcttggtattttatctggactgttcgatcttaaccaattgccactgatgtggctgactg |
704 |
Q |
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| T |
41776884 |
ctagctacattggtggccattgaatcaagaatggacgtcaagcttggtattttatctggactgttcgatcttaaccaattgccaccaatgtggctgactg |
41776983 |
T |
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| Q |
705 |
cgtgactgcattagattatgcctacacacaacccaaatctgtttcccaaatcccttcacatgcatgacacagtttgattttaagctaaaaacttaagcaa |
804 |
Q |
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| T |
41776984 |
cgtgactgcattagattatgcctacacacaacccaaatctgtttcccaaatcccttcacatgcatgacacagtttgattttaagctaaaaacttaagcaa |
41777083 |
T |
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| Q |
805 |
tttaacttacaaggattttgattgcaggttgctagtgcaacagcgacatttgtgatgatgttttcatcatcattgtctgtggttgaattctacctgctca |
904 |
Q |
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| T |
41777084 |
tttaacttacaaggattttgattgcaggttgctagtgcaacagcgacatttgtgatgatgttttcatcatcattgtctgtggttgaattctacctactca |
41777183 |
T |
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| Q |
905 |
agaggttccccattcc |
920 |
Q |
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| T |
41777184 |
agaggttccccattcc |
41777199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 690 - 735
Target Start/End: Original strand, 41308303 - 41308348
Alignment:
| Q |
690 |
tgatgtggctgactgcgtgactgcattagattatgcctacacacaa |
735 |
Q |
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| T |
41308303 |
tgatgtggctgactgcgtgactgcatcagattgtgactacatacaa |
41308348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 6e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 825 - 914
Target Start/End: Complemental strand, 26957042 - 26956953
Alignment:
| Q |
825 |
attgcaggttgctagtgcaacagcgacatttgtgatgatgttttcatcatcattgtctgtggttgaattctacctgctcaagaggttccc |
914 |
Q |
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| T |
26957042 |
attgtaggttgctagtgcaacagcaacatttgtgatgatgttttcatcatctttgtctgtttttgagttctacattctcaagaggttccc |
26956953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 471 - 543
Target Start/End: Complemental strand, 26957584 - 26957512
Alignment:
| Q |
471 |
gttggagggctacttggttctggaggtggattcattctgggccctcttctcattgagatcggtgtcatccctc |
543 |
Q |
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| T |
26957584 |
gttggaggcttacttggttctggaggtggatttattttggggcctcttctccttgagataggtgtcatccctc |
26957512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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