View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5434_high_14 (Length: 250)

Name: NF5434_high_14
Description: NF5434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5434_high_14
NF5434_high_14
[»] chr7 (6 HSPs)
chr7 (9-250)||(41901481-41901722)
chr7 (71-156)||(41896542-41896627)
chr7 (71-155)||(41829067-41829151)
chr7 (71-155)||(41885561-41885645)
chr7 (71-139)||(41891821-41891889)
chr7 (71-123)||(34453750-34453802)


Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 41901722 - 41901481
Alignment:
Q  9 ataatacttgaatgaattttaattaatgactattaattagtcgtaaatttggtgcagcttttaagaggccatttagcgaagaatttatgaaattctgcct 108  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |    
T  41901722 ataatacttgaatgaattttaattaatgactattaattagtcggaaatttggtgcagtttttaagaggccatttagcgaagaatttattaaattctgctt 41901623  T
Q  109 ggaaagatttgaagtgggactctggtcttctgcaatggagtcagtaacgctgatcttctatttcatttcttcccttttttcctctttaaatttgattaat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41901622 ggaaagatttgaagtgggactctggtcttctgcaatggagtcagtaacgctgatcttctatttcatttcttcccttttttcctctttaaatttgattaat 41901523  T
Q  209 tacttgatcttaaactgtatcctttttattgtaattgataat 250  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  41901522 tacttgatcttaaactgtatcctttttattgtaattaataat 41901481  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 71 - 156
Target Start/End: Complemental strand, 41896627 - 41896542
Alignment:
Q  71 aagaggccatttagcgaagaatttatgaaattctgcctggaaagatttgaagtgggactctggtcttctgcaatggagtcagtaac 156  Q
    |||||||||||||| ||||||||||||||||||||| | |||||||||||||||||  | ||||||||||||||||||||||||||    
T  41896627 aagaggccatttagtgaagaatttatgaaattctgcttagaaagatttgaagtgggggtttggtcttctgcaatggagtcagtaac 41896542  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 41829067 - 41829151
Alignment:
Q  71 aagaggccatttagcgaagaatttatgaaattctgcctggaaagatttgaagtgggactctggtcttctgcaatggagtcagtaa 155  Q
    |||||||||||||| ||||||||||||||||||||| | |||||||||||||| ||  | ||| ||||||||| | |||||||||    
T  41829067 aagaggccatttagtgaagaatttatgaaattctgcttagaaagatttgaagttgggatttggacttctgcaaagaagtcagtaa 41829151  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 41885645 - 41885561
Alignment:
Q  71 aagaggccatttagcgaagaatttatgaaattctgcctggaaagatttgaagtgggactctggtcttctgcaatggagtcagtaa 155  Q
    |||||||||||||| ||||||||||||||||||||| | |||||||||||||| ||  | ||| ||||||||| | |||||||||    
T  41885645 aagaggccatttagtgaagaatttatgaaattctgcttagaaagatttgaagttgggatttggacttctgcaaagaagtcagtaa 41885561  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 41891889 - 41891821
Alignment:
Q  71 aagaggccatttagcgaagaatttatgaaattctgcctggaaagatttgaagtgggactctggtcttct 139  Q
    ||||| |||||||  ||||||||||||||||||||| | ||||||||||||||||| ||||||||||||    
T  41891889 aagagaccatttactgaagaatttatgaaattctgcttagaaagatttgaagtgggcctctggtcttct 41891821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 34453750 - 34453802
Alignment:
Q  71 aagaggccatttagcgaagaatttatgaaattctgcctggaaagatttgaagt 123  Q
    |||||||||||||| ||||||||||||||||||||| | ||||||||||||||    
T  34453750 aagaggccatttagtgaagaatttatgaaattctgcttagaaagatttgaagt 34453802  T

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