View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5434_high_18 (Length: 240)

Name: NF5434_high_18
Description: NF5434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5434_high_18
NF5434_high_18
[»] chr1 (37 HSPs)
chr1 (1-218)||(2073914-2074132)
chr1 (1-218)||(2069568-2069786)
chr1 (17-123)||(17745219-17745325)
chr1 (17-131)||(40257398-40257513)
chr1 (20-131)||(51814493-51814605)
chr1 (9-130)||(11068797-11068919)
chr1 (17-117)||(28411343-28411444)
chr1 (17-130)||(10526823-10526937)
chr1 (9-130)||(52116735-52116857)
chr1 (17-133)||(6122791-6122908)
chr1 (38-130)||(9165178-9165271)
chr1 (15-131)||(41508830-41508947)
chr1 (17-129)||(44126396-44126509)
chr1 (9-130)||(50901581-50901703)
chr1 (9-87)||(6948031-6948109)
chr1 (74-131)||(8177201-8177259)
chr1 (38-131)||(8904413-8904507)
chr1 (65-130)||(19528337-19528403)
chr1 (17-130)||(31794226-31794340)
chr1 (9-130)||(42787208-42787330)
chr1 (17-113)||(12587287-12587383)
chr1 (67-131)||(25297771-25297836)
chr1 (9-49)||(15065047-15065087)
chr1 (9-56)||(44961840-44961887)
chr1 (17-130)||(1094525-1094639)
chr1 (65-130)||(9117119-9117185)
chr1 (17-130)||(16893394-16893508)
chr1 (77-130)||(19480527-19480581)
chr1 (9-47)||(28428553-28428591)
chr1 (39-128)||(33700757-33700847)
chr1 (9-130)||(38978897-38979018)
chr1 (65-130)||(47753714-47753780)
chr1 (39-131)||(6650594-6650687)
chr1 (89-130)||(16170013-16170054)
chr1 (89-130)||(42983409-42983450)
chr1 (74-130)||(51703779-51703836)
chr1 (9-56)||(42858590-42858638)
[»] chr5 (21 HSPs)
chr5 (17-130)||(14495767-14495881)
chr5 (17-130)||(29075781-29075895)
chr5 (17-130)||(16773807-16773921)
chr5 (14-119)||(21086725-21086831)
chr5 (65-132)||(29692396-29692464)
chr5 (65-123)||(1410669-1410728)
chr5 (17-130)||(16457810-16457924)
chr5 (17-123)||(19949578-19949684)
chr5 (17-130)||(21589288-21589402)
chr5 (9-130)||(43230728-43230852)
chr5 (64-123)||(16436625-16436684)
chr5 (17-56)||(27840981-27841020)
chr5 (17-119)||(43442207-43442310)
chr5 (9-87)||(29173534-29173612)
chr5 (9-87)||(29210402-29210480)
chr5 (65-130)||(5390862-5390926)
chr5 (38-130)||(25627057-25627150)
chr5 (24-57)||(31306837-31306870)
chr5 (94-130)||(892514-892550)
chr5 (67-130)||(6844729-6844793)
chr5 (75-130)||(21549157-21549213)
[»] chr3 (29 HSPs)
chr3 (17-126)||(4844473-4844583)
chr3 (17-126)||(4870169-4870279)
chr3 (17-131)||(10499071-10499186)
chr3 (17-123)||(13808847-13808954)
chr3 (17-126)||(2667866-2667976)
chr3 (20-107)||(28531023-28531111)
chr3 (39-130)||(14186648-14186739)
chr3 (9-131)||(36720380-36720503)
chr3 (9-130)||(4222141-4222263)
chr3 (17-122)||(51903840-51903946)
chr3 (75-131)||(5499427-5499484)
chr3 (89-130)||(16991542-16991583)
chr3 (67-131)||(31520617-31520682)
chr3 (17-125)||(38550366-38550475)
chr3 (65-131)||(8051213-8051280)
chr3 (17-130)||(10445101-10445216)
chr3 (72-130)||(31788987-31789046)
chr3 (92-130)||(203090-203128)
chr3 (74-131)||(7975417-7975475)
chr3 (65-130)||(14339610-14339676)
chr3 (65-130)||(21960551-21960617)
chr3 (9-87)||(33899658-33899736)
chr3 (9-130)||(37788420-37788541)
chr3 (77-130)||(42430335-42430388)
chr3 (74-131)||(46518627-46518685)
chr3 (75-122)||(11612307-11612355)
chr3 (12-56)||(17155035-17155079)
chr3 (94-126)||(17554454-17554486)
chr3 (24-119)||(32651407-32651503)
[»] chr8 (28 HSPs)
chr8 (23-130)||(23361617-23361725)
chr8 (8-130)||(968362-968485)
chr8 (14-130)||(20994416-20994534)
chr8 (15-87)||(14701377-14701449)
chr8 (17-131)||(4830486-4830601)
chr8 (17-131)||(8484998-8485113)
chr8 (9-130)||(26688865-26688987)
chr8 (9-130)||(27750730-27750852)
chr8 (20-128)||(2203494-2203603)
chr8 (74-130)||(32157191-32157248)
chr8 (65-131)||(16852339-16852406)
chr8 (17-131)||(28783059-28783174)
chr8 (17-114)||(7140725-7140822)
chr8 (17-130)||(8059632-8059746)
chr8 (17-130)||(11819776-11819890)
chr8 (9-87)||(33727827-33727905)
chr8 (39-127)||(35690048-35690137)
chr8 (9-61)||(43292390-43292442)
chr8 (9-44)||(2691391-2691426)
chr8 (65-131)||(5801046-5801113)
chr8 (65-131)||(19703497-19703564)
chr8 (9-56)||(43594272-43594319)
chr8 (17-110)||(6536540-6536634)
chr8 (17-87)||(24351690-24351760)
chr8 (17-130)||(30483846-30483960)
chr8 (65-129)||(29858059-29858124)
chr8 (94-134)||(22268973-22269013)
chr8 (14-113)||(30774695-30774795)
[»] chr6 (20 HSPs)
chr6 (9-131)||(33549103-33549226)
chr6 (9-131)||(12234461-12234584)
chr6 (72-130)||(24641207-24641266)
chr6 (17-131)||(31622953-31623068)
chr6 (34-123)||(6776586-6776676)
chr6 (17-129)||(6758384-6758497)
chr6 (24-119)||(28363948-28364044)
chr6 (9-130)||(3715452-3715574)
chr6 (74-132)||(12188322-12188381)
chr6 (89-128)||(32613175-32613214)
chr6 (64-110)||(346551-346597)
chr6 (14-127)||(8268641-8268755)
chr6 (14-48)||(12253789-12253823)
chr6 (65-130)||(21418470-21418536)
chr6 (65-130)||(30127400-30127466)
chr6 (17-50)||(31282523-31282556)
chr6 (94-123)||(34444810-34444839)
chr6 (94-130)||(28028530-28028566)
chr6 (75-130)||(32201905-32201961)
chr6 (91-123)||(33931982-33932014)
[»] chr2 (20 HSPs)
chr2 (17-131)||(25931005-25931120)
chr2 (17-132)||(37480073-37480189)
chr2 (9-131)||(21195630-21195753)
chr2 (65-131)||(39714991-39715058)
chr2 (9-130)||(42327349-42327471)
chr2 (65-131)||(34041598-34041665)
chr2 (24-130)||(41202250-41202357)
chr2 (17-130)||(1435064-1435177)
chr2 (64-133)||(29197385-29197455)
chr2 (17-131)||(23230567-23230681)
chr2 (75-123)||(3001386-3001435)
chr2 (74-130)||(4438998-4439055)
chr2 (18-130)||(19244109-19244222)
chr2 (17-129)||(37755933-37756046)
chr2 (72-131)||(7799052-7799112)
chr2 (17-53)||(11127965-11128001)
chr2 (9-49)||(15825670-15825710)
chr2 (74-129)||(16918597-16918653)
chr2 (75-130)||(18259730-18259786)
chr2 (94-130)||(32106566-32106602)
[»] scaffold0118 (1 HSPs)
scaffold0118 (17-130)||(41595-41709)
[»] chr7 (30 HSPs)
chr7 (17-130)||(15137553-15137667)
chr7 (89-132)||(35119381-35119424)
chr7 (65-131)||(45709718-45709785)
chr7 (9-56)||(24438201-24438248)
chr7 (17-123)||(41519227-41519333)
chr7 (17-123)||(43663057-43663164)
chr7 (65-130)||(22760863-22760929)
chr7 (65-130)||(23301612-23301678)
chr7 (17-130)||(26459372-26459486)
chr7 (65-130)||(48771938-48772004)
chr7 (63-130)||(25021343-25021411)
chr7 (91-130)||(4161288-4161327)
chr7 (17-127)||(7721372-7721483)
chr7 (65-131)||(23552117-23552184)
chr7 (77-130)||(7801180-7801234)
chr7 (17-130)||(20335793-20335907)
chr7 (74-123)||(23595736-23595786)
chr7 (17-130)||(25590611-25590725)
chr7 (77-130)||(25956314-25956368)
chr7 (74-131)||(26526289-26526347)
chr7 (13-87)||(41519068-41519142)
chr7 (65-130)||(43590907-43590973)
chr7 (9-106)||(279908-280005)
chr7 (94-131)||(41487361-41487398)
chr7 (14-112)||(8108599-8108696)
chr7 (65-128)||(21854550-21854614)
chr7 (9-57)||(32359225-32359273)
chr7 (9-53)||(33181164-33181208)
chr7 (17-104)||(42262057-42262145)
chr7 (17-61)||(48582799-48582843)
[»] chr4 (16 HSPs)
chr4 (17-130)||(28635696-28635810)
chr4 (3-130)||(13496241-13496369)
chr4 (9-131)||(51250476-51250599)
chr4 (9-130)||(51948480-51948602)
chr4 (17-131)||(7949416-7949531)
chr4 (65-130)||(47044717-47044783)
chr4 (67-130)||(9241037-9241101)
chr4 (14-130)||(19229167-19229283)
chr4 (9-123)||(21660098-21660213)
chr4 (9-123)||(21668862-21668977)
chr4 (66-130)||(19238588-19238653)
chr4 (38-130)||(37109334-37109427)
chr4 (14-130)||(55427159-55427276)
chr4 (89-132)||(27965545-27965588)
chr4 (9-87)||(13015471-13015549)
chr4 (23-130)||(46545711-46545819)
[»] scaffold0299 (1 HSPs)
scaffold0299 (35-123)||(11535-11624)
[»] scaffold0258 (1 HSPs)
scaffold0258 (17-130)||(15285-15399)
[»] scaffold0187 (2 HSPs)
scaffold0187 (97-130)||(12465-12498)
scaffold0187 (97-130)||(22793-22826)
[»] scaffold1367 (1 HSPs)
scaffold1367 (65-123)||(850-909)
[»] scaffold0126 (1 HSPs)
scaffold0126 (17-54)||(25309-25346)
[»] scaffold0070 (1 HSPs)
scaffold0070 (89-130)||(42555-42596)
[»] scaffold0417 (1 HSPs)
scaffold0417 (89-133)||(10216-10260)


Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 2074132 - 2073914
Alignment:
Q  1 tgaaaatgttttattt-aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgccagatcccaa 99  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||| |||||||||    
T  2074132 tgaaaatgtttttttttaagaagctaaattagctcatccaaattgacaccagagggatttgaatatgagacttcgaggaggagcacacgctagatcccaa 2074033  T
Q  100 gtcaataccaccaggccaacccaaatgggtttggtggttgaaagtgttaaagacacatttgcagttacagataaggttgacacttctttctatatggttt 199  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2074032 gtcaatacaaccaggccaacccaaatgggtttggtggttgaaagtgttaaagacacatttgcagttacagataaggttgacacttctttctgtatggttt 2073933  T
Q  200 tgcacaatgtgacagataa 218  Q
    |||||||||||||||||||    
T  2073932 tgcacaatgtgacagataa 2073914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 2069786 - 2069568
Alignment:
Q  1 tgaaaatgttttattt-aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgccagatcccaa 99  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||| ||||||||||||    
T  2069786 tgaaaatgtttttttttaagaagctaaattagctcatccaaattgacaccagagggatttgaatatgagacttcgaggaggagcacatgccagatcccaa 2069687  T
Q  100 gtcaataccaccaggccaacccaaatgggtttggtggttgaaagtgttaaagacacatttgcagttacagataaggttgacacttctttctatatggttt 199  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  2069686 gtcaatacaaccaggccaacccaaatgggtgtggtggttgaaagtgttaaagacacatttgcaattacagataaggttgacacttctttctgtatggttt 2069587  T
Q  200 tgcacaatgtgacagataa 218  Q
    |||||||||||||||||||    
T  2069586 tgcacaatgtgacagataa 2069568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 17745219 - 17745325
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggc 115  Q
    |||||||||||||| | || | |||||||||||||||||| | ||  ||||||| |||||||||||||||||| ||| ||||||| ||||||||| ||||    
T  17745219 aagaagctaaattaac-cacctaaattgacaccagagagaatcgaacatgagacctcgaggaggagcacacgctcaggtcccaagccaataccactaggc 17745317  T
Q  116 caacccaa 123  Q
    ||||||||    
T  17745318 caacccaa 17745325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 40257513 - 40257398
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggc 115  Q
    ||||||||||| |||| || ||||||||||||| || ||| ||||   |||||| ||||||||||||||||  |||| || |||| ||||||||||||||    
T  40257513 aagaagctaaactagcccacccaaattgacaccggatagaattgaacttgagacctcgaggaggagcacactcccaggtctcaagccaataccaccaggc 40257414  T
Q  116 caacccaaatgggttt 131  Q
    |||||||| |||||||    
T  40257413 caacccaagtgggttt 40257398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 51814605 - 51814493
Alignment:
Q  20 aagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggccaa 118  Q
    ||||||||||||| || |||||||| |||| |||||| | ||   |||||| | |||||||||||||| | |||||| ||||||||||||| ||||||||    
T  51814605 aagctaaattagcccacccaaattggcaccggagagaatcgaacctgagaccttgaggaggagcacactctcagatctcaagtcaataccatcaggccaa 51814506  T
Q  119 cccaaatgggttt 131  Q
    ||||| |||||||    
T  51814505 cccaagtgggttt 51814493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 11068797 - 11068919
Alignment:
Q  9 ttttatttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgccag-atcccaagtcaatac 107  Q
    |||| ||||||||||||||||||| |||  ||||||||||  |||||| |||| | ||||   || | ||||||||||| || | |||||||||||||||    
T  11068797 ttttttttaagaagctaaattagcccatttaaattgacactggagagaattgaatctgaggtctcaaagaggagcacactcctggatcccaagtcaatac 11068896  T
Q  108 caccaggccaacccaaatgggtt 130  Q
    ||||||  |||||||||||||||    
T  11068897 caccagatcaacccaaatgggtt 11068919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 28411444 - 28411343
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggc 115  Q
    |||||| ||||| |||||||  |||||| ||||||||||| |||| | |||||| || | ||||||||||| | || |||||||||||||||||||||||    
T  28411444 aagaagttaaatgagctcatttaaattggcaccagagagaattgaatctgagacctcaaagaggagcacactctcatatcccaagtcaataccaccaggc 28411345  T
Q  116 ca 117  Q
    ||    
T  28411344 ca 28411343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 10526937 - 10526823
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggc 115  Q
    |||||||||||||| | || |||||||||| ||||||||| | || | |||||| | ||||||||||| ||  |||| ||||||| |||||||||  | |    
T  10526937 aagaagctaaattaacccacccaaattgactccagagagaatcgaatctgagaccttgaggaggagcaaactcccaggtcccaagccaataccactggac 10526838  T
Q  116 caacccaaatgggtt 130  Q
    |||||||||||||||    
T  10526837 caacccaaatgggtt 10526823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 52116735 - 52116857
Alignment:
Q  9 ttttatttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgccaga-tcccaagtcaatac 107  Q
    |||| ||||||||||||||||||| || |  ||||| ||| || |||| ||||   |||||| | |||||||||||||| ||  | ||||||| ||||||    
T  52116735 ttttttttaagaagctaaattagcccaccttaattggcactagggagaattgaacctgagacattgaggaggagcacactcccaagtcccaagccaatac 52116834  T
Q  108 caccaggccaacccaaatgggtt 130  Q
    |||||||||||||||| ||||||    
T  52116835 caccaggccaacccaactgggtt 52116857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 6122908 - 6122791
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggc 115  Q
    |||||||||||||||| || |||||||||||| |||| || | ||   |||||| | ||||||||||||||  |||  ||||||| | ||||||| |||     
T  6122908 aagaagctaaattagcccacccaaattgacactagagggaatcgaacctgagaccttgaggaggagcacactcccaagtcccaagcctataccactaggg 6122809  T
Q  116 caacccaaatgggtttgg 133  Q
    ||||||||||||||||||    
T  6122808 caacccaaatgggtttgg 6122791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 9165178 - 9165271
Alignment:
Q  38 caaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    ||||||| ||||||||||| ||||   |||||| | |||||||||||||| || || ||||||| ||||||||| |||||||||||| ||||||    
T  9165178 caaattggcaccagagagaattgaacctgagactttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 9165271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 131
Target Start/End: Complemental strand, 41508947 - 41508830
Alignment:
Q  15 ttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccag 113  Q
    |||||||||||||||||| ||  ||| |||||||| ||  || || | | |||||| | |||||||||||||| || |||||||||  || |||||||||    
T  41508947 ttaagaagctaaattagcccactcaagttgacaccggatggaattaaatctgagaccttgaggaggagcacactcccagatcccaaaccagtaccaccag 41508848  T
Q  114 gccaacccaaatgggttt 131  Q
    |||||||||| |||||||    
T  41508847 gccaacccaagtgggttt 41508830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 44126509 - 44126396
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 115  Q
    ||||||||||||||||  | | |||||| ||| ||||||| |  | | |||||| ||| |||||||||||| || || ||||| ||||||||||||||||    
T  44126509 aagaagctaaattagcctacctaaattggcactagagagaatcaaatctgagacctcgtggaggagcacactcccaggtcccaggtcaataccaccaggc 44126410  T
Q  116 caacccaaatgggt 129  Q
    |||||||| |||||    
T  44126409 caacccaagtgggt 44126396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 50901703 - 50901581
Alignment:
Q  9 ttttatttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaa-ta 106  Q
    |||| ||||||||||||||||||| || | |||||| || | |||||| | || | |||||| ||||||||||||||||  |||| ||||||| ||| ||    
T  50901703 ttttttttaagaagctaaattagcccacctaaattggca-ctgagagaatcgaatttgagacctcgaggaggagcacactaccaggtcccaagccaatta 50901605  T
Q  107 ccaccaggccaacccaaatgggtt 130  Q
    |||| |||||||||||| ||||||    
T  50901604 ccactaggccaacccaagtgggtt 50901581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 6948031 - 6948109
Alignment:
Q  9 ttttatttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac 87  Q
    |||| ||||||||| ||||||| |||||| ||||||||||| | |||| ||||  ||||||| |||||||| |||||||    
T  6948031 ttttttttaagaagttaaattaactcatctaaattgacaccggtgagaattgaacatgagacctcgaggagcagcacac 6948109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 8177201 - 8177259
Alignment:
Q  74 gaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggttt 131  Q
    |||||||||||||| || |||||||||| ||||||||| |||||||| |||||||||||    
T  8177201 gaggaggagcacactcccagatcccaagccaataccactaggccaactcaaatgggttt 8177259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 131
Target Start/End: Complemental strand, 8904507 - 8904413
Alignment:
Q  38 caaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggccaacccaaatgggttt 131  Q
    ||||||| ||||||||||| | ||   |||||| | |||||||||||||| | || ||||||||||||||| || |||||||||||| |||||||    
T  8904507 caaattggcaccagagagaatcgaacttgagaccttgaggaggagcacactcacatatcccaagtcaatactactaggccaacccaagtgggttt 8904413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 130
Target Start/End: Original strand, 19528337 - 19528403
Alignment:
Q  65 tgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    |||||| | |||||||||||||| |  |||||||||| |||||||||||||||||||||| ||||||    
T  19528337 tgagaccttgaggaggagcacactcatagatcccaagccaataccaccaggccaacccaagtgggtt 19528403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 31794226 - 31794340
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggc 115  Q
    |||||||||||||||| || ||||||||||||||||| || | ||     |||| | ||||||||||||||  |||  ||||||| ||||||||| ||||    
T  31794226 aagaagctaaattagcccacccaaattgacaccagagggaatcgaactctagaccttgaggaggagcacactcccaagtcccaagccaataccactaggc 31794325  T
Q  116 caacccaaatgggtt 130  Q
    |||||||| ||||||    
T  31794326 caacccaagtgggtt 31794340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 42787330 - 42787208
Alignment:
Q  9 ttttatttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagtcaatac 107  Q
    |||| ||||| || |||||||| ||||| ||||||||||| ||||||| | || | |||||| | |||||||| | ||| | ||  ||||||||||||||    
T  42787330 ttttttttaataaactaaattaactcattcaaattgacactagagagactcgaatctgagactttgaggaggaacgcactctcaagtcccaagtcaatac 42787231  T
Q  108 caccaggccaacccaaatgggtt 130  Q
    ||| ||||||||| || ||||||    
T  42787230 cactaggccaacctaactgggtt 42787208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 12587383 - 12587287
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccag 113  Q
    |||||||||||||||| || | |||||| |||| |||||| | ||   |||||| |||||||||||||||| | ||||||||||||||||| ||||||    
T  12587383 aagaagctaaattagcccacctaaattg-caccggagagaatcgaacctgagacctcgaggaggagcacactcacagatcccaagtcaatatcaccag 12587287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 25297836 - 25297771
Alignment:
Q  67 agacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggccaacccaaatgggttt 131  Q
    |||| |||||||||||||||| | ||||||| ||||||||||||| || ||||||||| |||||||    
T  25297836 agacctcgaggaggagcacactctcagatcctaagtcaataccactagaccaacccaagtgggttt 25297771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 15065087 - 15065047
Alignment:
Q  9 ttttatttaagaagctaaattagctcatccaaattgacacc 49  Q
    |||||||||||||||||||||||| || |||||||||||||    
T  15065087 ttttatttaagaagctaaattagcccacccaaattgacacc 15065047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 44961887 - 44961840
Alignment:
Q  9 ttttatttaagaagctaaattagctcatccaaattgacaccagagaga 56  Q
    |||| ||||||||||||||||||| || |||||||||||| |||||||    
T  44961887 ttttttttaagaagctaaattagcccacccaaattgacactagagaga 44961840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 1094639 - 1094525
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggc 115  Q
    |||||| ||||||||| || | |||||| |||| |||||| | || | |||||| ||| |||||||||||| | ||| | |||||||||||||| ||  |    
T  1094639 aagaagttaaattagcccacctaaattggcaccggagagaatcgaatttgagacctcgtggaggagcacactcacaggttccaagtcaataccaacaaac 1094540  T
Q  116 caacccaaatgggtt 130  Q
    |||||||| ||||||    
T  1094539 caacccaagtgggtt 1094525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 9117185 - 9117119
Alignment:
Q  65 tgagacgtcgaggaggagcacacg-ccagatcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    |||||| || |||||||||||||  |||||||||||| | |||||| | ||||||||||||||||||    
T  9117185 tgagacctcaaggaggagcacacttccagatcccaagcccataccaaccggccaacccaaatgggtt 9117119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 16893508 - 16893394
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggc 115  Q
    |||||||||||||||| ||  |||||||||||| |||| | | ||   |||||| ||||||||||| ||||  ||| ||| |||| |||||||| ||||     
T  16893508 aagaagctaaattagcccactcaaattgacaccggagaaaatcgaacctgagacctcgaggaggagtacactcccaaatctcaagccaataccaacaggt 16893409  T
Q  116 caacccaaatgggtt 130  Q
    |||||||| ||||||    
T  16893408 caacccaagtgggtt 16893394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 130
Target Start/End: Complemental strand, 19480581 - 19480527
Alignment:
Q  77 gaggagcacacgcca-gatcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    ||||||||||| ||| ||||||||||||| ||||  |||||||||||||||||||    
T  19480581 gaggagcacactccaagatcccaagtcaacaccataaggccaacccaaatgggtt 19480527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 28428591 - 28428553
Alignment:
Q  9 ttttatttaagaagctaaattagctcatccaaattgaca 47  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  28428591 ttttttttaagaagctaaattagcccatccaaattgaca 28428553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 33700757 - 33700847
Alignment:
Q  39 aaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatggg 128  Q
    |||||| ||||||||||| | ||   |||||| | |||||||||||||| || |||| ||||| ||||||||| |||||||||||| ||||    
T  33700757 aaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactcccagattccaagccaataccactaggccaacccaagtggg 33700847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 38978897 - 38979018
Alignment:
Q  9 ttttatttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaatac 107  Q
    |||| ||||||| ||||||||||| | | ||||||| |||  |||||| ||||  ||||||| | | |||  ||||||| || || || |||||||||||    
T  38978897 ttttttttaagaggctaaattagcccgttcaaattggcactggagagagttgaacatgagaccttgtggaa-agcacactcctaggtctcaagtcaatac 38978995  T
Q  108 caccaggccaacccaaatgggtt 130  Q
    ||| |||||||||||||||||||    
T  38978996 cactaggccaacccaaatgggtt 38979018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 47753780 - 47753714
Alignment:
Q  65 tgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    |||||| | |||||||||||||  || ||||||||||||||||| |||||| ||||| |||||||||    
T  47753780 tgagaccttgaggaggagcacagtcctagatcccaagtcaatacgaccaggtcaacctaaatgggtt 47753714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 131
Target Start/End: Complemental strand, 6650687 - 6650594
Alignment:
Q  39 aaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggccaacccaaatgggttt 131  Q
    |||||||||||||||||| | ||   |||||| | ||||||||||| ||  || ||||||||| ||||||||| ||||||||| || |||||||    
T  6650687 aaattgacaccagagagaatcgaacctgagacattgaggaggagcatactccccgatcccaagccaataccactaggccaacctaattgggttt 6650594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 130
Target Start/End: Original strand, 16170013 - 16170054
Alignment:
Q  89 ccagatcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    |||| |||||||||||||||||||||| ||||||| ||||||    
T  16170013 ccaggtcccaagtcaataccaccaggctaacccaagtgggtt 16170054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 130
Target Start/End: Original strand, 42983409 - 42983450
Alignment:
Q  89 ccagatcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    ||||||| |||||||||||||||| |||||||||||| ||||    
T  42983409 ccagatctcaagtcaataccaccatgccaacccaaataggtt 42983450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 51703836 - 51703779
Alignment:
Q  74 gaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    |||||||||||||| || |||| ||||| ||||||||| || ||||||||||||||||    
T  51703836 gaggaggagcacactcccagattccaagccaataccactagaccaacccaaatgggtt 51703779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 42858590 - 42858638
Alignment:
Q  9 ttttattt-aagaagctaaattagctcatccaaattgacaccagagaga 56  Q
    |||||||| ||||| |||||||||| ||| |||||||||||||||||||    
T  42858590 ttttatttgaagaaactaaattagcccattcaaattgacaccagagaga 42858638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 14495767 - 14495881
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 115  Q
    ||||||||||| |||| |||| |||||| || | |||||| |  | | |||||| |||||||||||||||| || ||||||||||||||||||||||| |    
T  14495767 aagaagctaaactagcccatctaaattggcatcggagagaatcaaatctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagac 14495866  T
Q  116 caacccaaatgggtt 130  Q
    |||||||||||||||    
T  14495867 caacccaaatgggtt 14495881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 29075895 - 29075781
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggc 115  Q
    |||||||||||||||| |||| |||||| ||||||||||| | ||  ||||||  ||||||||||||||||  |||||||||||| ||||||||| ||||    
T  29075895 aagaagctaaattagcccatctaaattggcaccagagagaatcgaacatgagatctcgaggaggagcacactcccagatcccaagccaataccactaggc 29075796  T
Q  116 caacccaaatgggtt 130  Q
     ||||||| ||||||    
T  29075795 aaacccaagtgggtt 29075781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 16773921 - 16773807
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 115  Q
    |||||||||||||||| || | |||||| || |||||||| | ||   |||||| |||||||||||||||| || || |||||||||||||||||||| |    
T  16773921 aagaagctaaattagcccacctaaattggcatcagagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaataccaccagac 16773822  T
Q  116 caacccaaatgggtt 130  Q
    |||| ||| ||||||    
T  16773821 caactcaagtgggtt 16773807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 21086831 - 21086725
Alignment:
Q  14 tttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccacca 112  Q
    ||||||||| |||||||| ||||| |||||||||||||||| | | || | |||||  | |||||||||||||| ||||||||| || ||||||||| ||    
T  21086831 tttaagaagttaaattaggtcatctaaattgacaccagagataatcgaatctgagatcttgaggaggagcacactgccagatcctaaatcaataccatca 21086732  T
Q  113 ggccaac 119  Q
    | |||||    
T  21086731 gaccaac 21086725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 132
Target Start/End: Original strand, 29692396 - 29692464
Alignment:
Q  65 tgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggtttg 132  Q
    |||||| | |||||||||||||| || |||||||||  |||||||||||| ||||||||||||||||||    
T  29692396 tgagactttgaggaggagcacactcccagatcccaatccaataccaccagaccaacccaaatgggtttg 29692464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 1410669 - 1410728
Alignment:
Q  65 tgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaa 123  Q
    |||||| |||||||||||||||| || | ||||||||||||||||||||| |||||||||    
T  1410669 tgagacctcgaggaggagcacactcccatatcccaagtcaataccaccagaccaacccaa 1410728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 16457924 - 16457810
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcca-gatcccaagtcaataccaccaggc 115  Q
    ||||| ||||| |||| ||  ||||||| |||| | |||| ||||  ||||||| | |||||||||||||| ||| | ||||||| ||||||||||||||    
T  16457924 aagaacctaaactagcccacgcaaattggcaccggggagaattgaacatgagaccttgaggaggagcacactccaaggtcccaagccaataccaccaggc 16457825  T
Q  116 caacccaaatgggtt 130  Q
    ||||| || ||||||    
T  16457824 caacctaagtgggtt 16457810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 19949578 - 19949684
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgccagatcccaagtcaataccaccaggcc 116  Q
    |||||| ||||||||   ||||||||||||||| | || | ||||   |||||  |||||||||||||||| | ||||| |||||||||||||||| | |    
T  19949578 aagaagttaaattagtctatccaaattgacaccggtgaaaattgaacctgagagctcgaggaggagcacactctagatctcaagtcaataccaccaagtc 19949677  T
Q  117 aacccaa 123  Q
    |||||||    
T  19949678 aacccaa 19949684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 21589402 - 21589288
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 115  Q
    ||||||||||| |||| || | |||||| |||||||| || | ||   |||||| |||||||| |||| || || || ||||||| ||||||||||||||    
T  21589402 aagaagctaaactagcccacctaaattggcaccagagggaatcgaacctgagacatcgaggagtagcagactcccaggtcccaagccaataccaccaggc 21589303  T
Q  116 caacccaaatgggtt 130  Q
    |||||||| ||||||    
T  21589302 caacccaagtgggtt 21589288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 43230728 - 43230852
Alignment:
Q  9 ttttatttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagtca--at 105  Q
    |||| ||||||||| |||| || |||||| |||||||||| ||||||| |||| | |||||  |  ||||||||||||| | |||| |||||| ||  ||    
T  43230728 ttttttttaagaagttaaactaactcatctaaattgacacaagagagaattgaatctgagatcttaaggaggagcacactctcagaacccaagccaatat 43230827  T
Q  106 accaccaggccaacccaaatgggtt 130  Q
    ||||| |||||||||||| ||||||    
T  43230828 accactaggccaacccaagtgggtt 43230852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 16436684 - 16436625
Alignment:
Q  64 atgagacgtcgaggaggagcacacgccagatcccaagtcaataccaccaggccaacccaa 123  Q
    ||||||| | |||||||||||||| |||  ||||||| ||||||||| ||||||||||||    
T  16436684 atgagaccttgaggaggagcacactccaagtcccaagccaataccactaggccaacccaa 16436625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 27840981 - 27841020
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagaga 56  Q
    |||||||||||||||| |||||||||| ||||||||||||    
T  27840981 aagaagctaaattagcccatccaaattaacaccagagaga 27841020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 43442310 - 43442207
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggc 115  Q
    ||||| |||||||||| |||||||||||||| |||||||| | ||   |||||| | ||||||||||||||  ||||||| |||  ||||||||| | ||    
T  43442310 aagaaactaaattagcccatccaaattgacaacagagagaatcgaacctgagaccttgaggaggagcacactcccagatctcaaaccaataccactatgc 43442211  T
Q  116 caac 119  Q
    ||||    
T  43442210 caac 43442207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 29173612 - 29173534
Alignment:
Q  9 ttttatttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac 87  Q
    |||| ||||||||||||||||||| || | |||||||||||||||| | | ||   ||| || ||||||||||||||||    
T  29173612 ttttttttaagaagctaaattagcccacctaaattgacaccagagataatcgaacctgaaacctcgaggaggagcacac 29173534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 29210480 - 29210402
Alignment:
Q  9 ttttatttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac 87  Q
    |||| ||||||||||||||||||  || | ||||||| |||||||||| ||||   ||| || ||||||||||||||||    
T  29210480 ttttttttaagaagctaaattagtccacctaaattgataccagagagaattgaacttgaaacctcgaggaggagcacac 29210402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 130
Target Start/End: Original strand, 5390862 - 5390926
Alignment:
Q  65 tgagacgtcgaggaggagcacacgccagatcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    |||||| |||||||||||||| | | ||  |||||| ||||||||| |||||||||||||||||||    
T  5390862 tgagacctcgaggaggagcactcccaagc-cccaagccaataccactaggccaacccaaatgggtt 5390926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 130
Target Start/End: Complemental strand, 25627150 - 25627057
Alignment:
Q  38 caaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgccaga-tcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    ||||||||||||||||||| | ||   |||||| | |||||||||||||| ||  | | ||||| ||||||||| |||||||||||| ||||||    
T  25627150 caaattgacaccagagagaatcgaacctgagaccttgaggaggagcacactcccaagttccaagccaataccactaggccaacccaagtgggtt 25627057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 31306870 - 31306837
Alignment:
Q  24 taaattagctcatccaaattgacaccagagagat 57  Q
    |||||||| |||||||||||||||||||||||||    
T  31306870 taaattagttcatccaaattgacaccagagagat 31306837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 130
Target Start/End: Original strand, 892514 - 892550
Alignment:
Q  94 tcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  892514 tcccaagccaataccactaggccaacccaaatgggtt 892550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 6844793 - 6844729
Alignment:
Q  67 agacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    |||| |||||||||| ||||| || | || |||||||||||||||| ||||||||||| ||||||    
T  6844793 agacctcgaggaggaacacactcccaaattccaagtcaataccacctggccaacccaagtgggtt 6844729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 21549157 - 21549213
Alignment:
Q  75 aggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    ||||||||||||| || || ||||||| ||||||||| |||||||||||| ||||||    
T  21549157 aggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 21549213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 4844473 - 4844583
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 115  Q
    |||||||||||||||| ||  ||||||| |||| |||||| | ||   |||||| |||||||||||||||| || ||||||||||||||||||||||| |    
T  4844473 aagaagctaaattagcccacacaaattggcaccggagagaatcgatcctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagac 4844572  T
Q  116 caacccaaatg 126  Q
    |||||||||||    
T  4844573 caacccaaatg 4844583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 4870169 - 4870279
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 115  Q
    |||||||||||||||| ||  ||||||| |||| |||||| | ||   |||||| |||||||||||||||| || ||||||||||||||||||||||| |    
T  4870169 aagaagctaaattagcccacacaaattggcaccggagagaatcgatcctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagac 4870268  T
Q  116 caacccaaatg 126  Q
    |||||||||||    
T  4870269 caacccaaatg 4870279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 10499071 - 10499186
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 115  Q
    |||||||||||||||| || ||||||||||| | |||||| | ||   |||||| || |||| ||||| || || |||||||||| ||||||||||||||    
T  10499071 aagaagctaaattagcccacccaaattgacatcggagagaatcgaacctgagacctcaaggaagagcagactcccagatcccaagccaataccaccaggc 10499170  T
Q  116 caacccaaatgggttt 131  Q
    |||||||| |||||||    
T  10499171 caacccaagtgggttt 10499186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 13808847 - 13808954
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggc 115  Q
    ||||||||||||||   ||||||||||||||  ||||||| ||||   |||||| | |||||||||||||| |||||||||||||||||||  ||||| |    
T  13808847 aagaagctaaattaatccatccaaattgacattagagagaattgaacctgagacctagaggaggagcacactgccagatcccaagtcaataagaccagac 13808946  T
Q  116 caacccaa 123  Q
    ||||||||    
T  13808947 caacccaa 13808954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 2667976 - 2667866
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 115  Q
    ||||||||||| |||| || | |||||||||| ||||| | | ||   |||||| ||||||| |||||||| || |||||||||| ||||||||||||||    
T  2667976 aagaagctaaactagcccacctaaattgacactagagataatcgaacctgagacctcgaggaagagcacactcccagatcccaagccaataccaccaggc 2667877  T
Q  116 caacccaaatg 126  Q
    |||||||||||    
T  2667876 caacccaaatg 2667866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 28531023 - 28531111
Alignment:
Q  20 aagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaatac 107  Q
    ||||||||||||| || |||||||||||||||||||| |||||  | |||| ||||||||||||| ||  |||||||||||| ||||||    
T  28531023 aagctaaattagcccacccaaattgacaccagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 28531111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 130
Target Start/End: Complemental strand, 14186739 - 14186648
Alignment:
Q  39 aaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgccagatcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    ||||||||||| |||||| | ||   |||||| | |||||||||||||| |||| ||||||| ||||||||| |||||||||||| ||||||    
T  14186739 aaattgacaccggagagaatcgaacctgagaccttgaggaggagcacactccaggtcccaagacaataccactaggccaacccaagtgggtt 14186648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 131
Target Start/End: Complemental strand, 36720503 - 36720380
Alignment:
Q  9 ttttatttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaatac 107  Q
    |||| ||||||||||||||  ||| || | |||||||||| ||||||| | ||   ||| || |||||||||||||||| || | |||||||| ||||||    
T  36720503 ttttttttaagaagctaaaccagcccacctaaattgacactagagagaatcgaacctgaaacctcgaggaggagcacactcccatatcccaagccaatac 36720404  T
Q  108 caccaggccaacccaaatgggttt 131  Q
    |||||| ||||||||| |||||||    
T  36720403 caccagaccaacccaagtgggttt 36720380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 4222263 - 4222141
Alignment:
Q  9 ttttatttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaatac 107  Q
    |||| ||||||||| |||| || |||| | |||||||||||||||||| | ||   | |||| | |||||||||||||| || |||||||||| ||||||    
T  4222263 ttttttttaagaagttaaactaactcacctaaattgacaccagagagaatcgaacctaagactttgaggaggagcacactcccagatcccaagccaatac 4222164  T
Q  108 caccaggccaacccaaatgggtt 130  Q
    ||| | |||||||||| ||||||    
T  4222163 cactaagccaacccaagtgggtt 4222141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 51903840 - 51903946
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggc 115  Q
    |||||||||||||||| ||  |||||||||||| |||||| | ||   ||||||  |||||||||||||||  |||||||||||| |||||||| ||||     
T  51903840 aagaagctaaattagcccactcaaattgacaccggagagaatcgaacctgagaccacgaggaggagcacactcccagatcccaagccaataccaacaggt 51903939  T
Q  116 caaccca 122  Q
    |||||||    
T  51903940 caaccca 51903946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 5499427 - 5499484
Alignment:
Q  75 aggaggagcacacgc-cagatcccaagtcaataccaccaggccaacccaaatgggttt 131  Q
    ||||||||||||| | |||||| ||||||||||||||||||||||||||| |||||||    
T  5499427 aggaggagcacactctcagatctcaagtcaataccaccaggccaacccaagtgggttt 5499484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 130
Target Start/End: Complemental strand, 16991583 - 16991542
Alignment:
Q  89 ccagatcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  16991583 ccagatcccaagccaataccaccaggccaacccaaatgggtt 16991542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 31520617 - 31520682
Alignment:
Q  67 agacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggttt 131  Q
    |||| |||||||||||||||| || |||||||||| |||| ||||||||||||||||| |||||||    
T  31520617 agacctcgaggaggagcacactcccagatcccaagccaatgccaccaggccaacccaagtgggttt 31520682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 38550366 - 38550475
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggc 115  Q
    ||||||||||||||||||||||||||| ||||   ||||| ||||   | |||| || |||||||||||||  ||| | || |||||||||||| |||||    
T  38550366 aagaagctaaattagctcatccaaattaacacagaagagaattgaacctcagacctcaaggaggagcacactcccaaaccctaagtcaataccaacaggc 38550465  T
Q  116 caacccaaat 125  Q
    ||||||||||    
T  38550466 caacccaaat 38550475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 8051280 - 8051213
Alignment:
Q  65 tgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggccaacccaaatgggttt 131  Q
    |||||| |||||||| |||| || ||||| ||||||| |||||||||||||||||||||| |||||||    
T  8051280 tgagacctcgaggagaagcatactgccaggtcccaagccaataccaccaggccaacccaagtgggttt 8051213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 10445101 - 10445216
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaa-taccaccagg 114  Q
    |||||||||||||||| ||  ||||||  ||||||||||| | ||   |||||| ||||||||||||||||  |||| ||||||| ||| | |||| |||    
T  10445101 aagaagctaaattagcccactcaaattagcaccagagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaattgccactagg 10445200  T
Q  115 ccaacccaaatgggtt 130  Q
    ||||||||| ||||||    
T  10445201 ccaacccaagtgggtt 10445216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 31788987 - 31789046
Alignment:
Q  72 tcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    |||||||||||||||| || |||||||||| ||||| ||| |||||||||||| ||||||    
T  31788987 tcgaggaggagcacactcccagatcccaagccaataacactaggccaacccaagtgggtt 31789046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 130
Target Start/End: Complemental strand, 203128 - 203090
Alignment:
Q  92 gatcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  203128 gatcccaagtcaataccactaggccaacccaagtgggtt 203090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 7975475 - 7975417
Alignment:
Q  74 gaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggttt 131  Q
    |||||||||||||| || |||||||||| | ||||||| ||||||||| ||||||||||    
T  7975475 gaggaggagcacactcccagatcccaagcctataccactaggccaacctaaatgggttt 7975417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 14339676 - 14339610
Alignment:
Q  65 tgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    |||||| | |||||||||||||| || | |||||||| ||||||||||||||||| |||| ||||||    
T  14339676 tgagacattgaggaggagcacactcccaaatcccaagccaataccaccaggccaatccaactgggtt 14339610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 21960617 - 21960551
Alignment:
Q  65 tgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    |||||| |||||||||||||||| | ||| ||||||| ||||||||||||  |||||||| ||||||    
T  21960617 tgagacctcgaggaggagcacactctcaggtcccaagccaataccaccagcgcaacccaattgggtt 21960551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 33899736 - 33899658
Alignment:
Q  9 ttttatttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac 87  Q
    |||| ||||| ||||||||||||| || |||||||||||||| ||||| | ||   |||||| | ||||||||||||||    
T  33899736 ttttttttaataagctaaattagcacacccaaattgacaccaaagagaatcgaacctgagacctagaggaggagcacac 33899658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 37788420 - 37788541
Alignment:
Q  9 ttttatttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaatac 107  Q
    |||| ||||||||||||||||| | | || |||||| ||| ||||||| | ||   |||||| | |||||||||||||| || || | ||||||||||||    
T  37788420 ttttttttaagaagctaaattaacccctc-aaattggcactagagagaatcgaacctgagaccttgaggaggagcacactcctaggttccaagtcaatac 37788518  T
Q  108 caccaggccaacccaaatgggtt 130  Q
    |||  ||||||||||| ||||||    
T  37788519 cactgggccaacccaagtgggtt 37788541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 130
Target Start/End: Complemental strand, 42430388 - 42430335
Alignment:
Q  77 gaggagcacacgcca-gatcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    ||||||||||| ||| ||||||||||||||||||||| |||||||||| ||||||    
T  42430388 gaggagcacactccaagatcccaagtcaataccacca-gccaacccaagtgggtt 42430335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 46518685 - 46518627
Alignment:
Q  74 gaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggttt 131  Q
    |||||||||||||| || |||||||||| ||||||||| | |||||||||| |||||||    
T  46518685 gaggaggagcacactcccagatcccaagccaataccactatgccaacccaagtgggttt 46518627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 11612355 - 11612307
Alignment:
Q  75 aggaggagcacacgcc-agatcccaagtcaataccaccaggccaaccca 122  Q
    ||||||||||||| || || |||||||| ||||||||||||||||||||    
T  11612355 aggaggagcacactcccagctcccaagtgaataccaccaggccaaccca 11612307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 17155035 - 17155079
Alignment:
Q  12 tatttaagaagctaaattagctcatccaaattgacaccagagaga 56  Q
    |||| |||| |||||||| |||||||||||||| |||||||||||    
T  17155035 tattgaagatgctaaattggctcatccaaattggcaccagagaga 17155079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 126
Target Start/End: Complemental strand, 17554486 - 17554454
Alignment:
Q  94 tcccaagtcaataccaccaggccaacccaaatg 126  Q
    ||||||||||||| |||||||||||||||||||    
T  17554486 tcccaagtcaatatcaccaggccaacccaaatg 17554454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 32651407 - 32651503
Alignment:
Q  24 taaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggccaac 119  Q
    |||| |||| |||| |||||||||| ||||||| | || | |||||  | ||||||||||||||  |||| ||||||| ||||||||| ||||||||    
T  32651407 taaactagcccatctaaattgacactagagagaatcgaatctgagatcttgaggaggagcacactcccaggtcccaagccaataccactaggccaac 32651503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 130
Target Start/End: Original strand, 23361617 - 23361725
Alignment:
Q  23 ctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaaccc 121  Q
    |||||||||| || | |||||||||||||||||| ||||   |||||| | |||||||||||||| || | |||||||||||||||||||||| ||||||    
T  23361617 ctaaattagcccacctaaattgacaccagagagaattgaacctgagaccttgaggaggagcacactcccatatcccaagtcaataccaccaggtcaaccc 23361716  T
Q  122 aaatgggtt 130  Q
    || ||||||    
T  23361717 aagtgggtt 23361725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 968485 - 968362
Alignment:
Q  8 gttttatttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaata 106  Q
    ||||| ||||||||||||||||||| || | |||||| || | |||||| | ||   |||||| |||||||||||||||| || || ||||||| |||||    
T  968485 gttttttttaagaagctaaattagcccacctaaattggcatcggagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaata 968386  T
Q  107 ccaccaggccaacccaaatgggtt 130  Q
    ||||||||||||| ||| ||||||    
T  968385 ccaccaggccaactcaagtgggtt 968362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 20994416 - 20994534
Alignment:
Q  14 tttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgagg-aggagcacacgcc-agatcccaagtcaataccacc 111  Q
    ||||||||||||||||||| |||||||||||  |||||||| | | ||   |||||| | |||| |||||||||| || || |||||||||||||||||     
T  20994416 tttaagaagctaaattagcccatccaaattggtaccagagataatcgatcctgagactttgagggaggagcacactcccaggtcccaagtcaataccact 20994515  T
Q  112 aggccaacccaaatgggtt 130  Q
    |||||||||||| ||||||    
T  20994516 aggccaacccaagtgggtt 20994534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 14701377 - 14701449
Alignment:
Q  15 ttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac 87  Q
    |||||||| ||||||||||||||||||||||||||| ||||| |||| | |||||| | ||| ||||||||||    
T  14701377 ttaagaagttaaattagctcatccaaattgacaccaaagagaattgaatctgagactttgagaaggagcacac 14701449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 4830601 - 4830486
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggc 115  Q
    ||||||||||||||   ||||||||||||||||  | | ||||||   |||||| |||||||||| ||||| | ||||||||||   |||||||||||||    
T  4830601 aagaagctaaattaatccatccaaattgacaccgtataaatttgaacctgagacctcgaggaggaacacactctcagatcccaaacaaataccaccaggc 4830502  T
Q  116 caacccaaatgggttt 131  Q
    |||||||| |||||||    
T  4830501 caacccaagtgggttt 4830486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 8485113 - 8484998
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggc 115  Q
    |||||||||||||||| || | |||||| |||| |||||| | ||  ||||||| || | ||||||||||| | ||| |||||||  |||||||||||||    
T  8485113 aagaagctaaattagcccacctaaattggcaccggagagaatcgaaaatgagacctcaaagaggagcacactcacaggtcccaagcaaataccaccaggc 8485014  T
Q  116 caacccaaatgggttt 131  Q
    |||||||| |||||||    
T  8485013 caacccaagtgggttt 8484998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 26688987 - 26688865
Alignment:
Q  9 ttttatttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcca-gatcccaagtcaatac 107  Q
    |||| |||||||||||||| |||| || |||||||||||| ||  |||  |||   |||||| | |||||||||||||| ||| | ||||||| ||| ||    
T  26688987 ttttttttaagaagctaaactagcccacccaaattgacactaggaagaactgaacctgagaccttgaggaggagcacactccaaggtcccaagccaacac 26688888  T
Q  108 caccaggccaacccaaatgggtt 130  Q
    |||||||||||||||| ||||||    
T  26688887 caccaggccaacccaagtgggtt 26688865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 27750852 - 27750730
Alignment:
Q  9 ttttatttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaatac 107  Q
    |||| ||||||||||||||||||  ||||||||||||||| |||| || | ||   |||||| | ||||||||||||||  |||  ||||||| | ||||    
T  27750852 ttttttttaagaagctaaattagtccatccaaattgacactagagggaatcgaacctgagaccttgaggaggagcacactcccaagtcccaagcctatac 27750753  T
Q  108 caccaggccaacccaaatgggtt 130  Q
    ||| ||| |||||||||||||||    
T  27750752 cacgagggcaacccaaatgggtt 27750730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 2203603 - 2203494
Alignment:
Q  20 aagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaa 118  Q
    ||||||||||||| || |||||||| |||| | |||| ||||   |||||| | |||||||||||||| || || ||||||| ||||||||| |||||||    
T  2203603 aagctaaattagcccacccaaattggcaccggggagaattgaccctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaa 2203504  T
Q  119 cccaaatggg 128  Q
    ||||| ||||    
T  2203503 cccaagtggg 2203494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 32157248 - 32157191
Alignment:
Q  74 gaggaggagcacacgcca-gatcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    ||||||||||| || ||| | |||||||||||||||||||||||||||||||||||||    
T  32157248 gaggaggagcatactccaaggtcccaagtcaataccaccaggccaacccaaatgggtt 32157191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 16852406 - 16852339
Alignment:
Q  65 tgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggttt 131  Q
    |||||| |||||||||||||||| || || ||||||| ||||||||| |||||||||||| |||||||    
T  16852406 tgagacctcgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggttt 16852339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 28783174 - 28783059
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 115  Q
    |||||||||||||||| || |||||||| ||||   |||| | ||  ||||||| | |||||||||||||| || || || |||| ||||||||||| ||    
T  28783174 aagaagctaaattagcccacccaaattggcaccgaggagaatcgaacatgagaccttgaggaggagcacactcccaggtctcaagccaataccaccaagc 28783075  T
Q  116 caacccaaatgggttt 131  Q
    |||||||| |||||||    
T  28783074 caacccaagtgggttt 28783059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 7140822 - 7140725
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccagg 114  Q
    |||||| ||||||||| || ||||||||| ||| |||||| | || | |||||  |||||||||||||||| || |||||||||| |||||||||||||    
T  7140822 aagaaggtaaattagcccacccaaattgatacc-gagagaatcgaatctgagagctcgaggaggagcacacacccagatcccaagccaataccaccagg 7140725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 8059746 - 8059632
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggc 115  Q
    ||||||||||| |||||||  |||||||||| ||| |||| | ||   |||||| | |||||||| ||||| | || || |||||||||||||| |||||    
T  8059746 aagaagctaaactagctcactcaaattgacatcagggagaatggaacctgagaccttgaggaggatcacactctcacatgccaagtcaataccatcaggc 8059647  T
Q  116 caacccaaatgggtt 130  Q
    |||||||| ||||||    
T  8059646 caacccaagtgggtt 8059632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 11819890 - 11819776
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggc 115  Q
    |||||||||||||||| || |||||||||||| |||| || | ||   |||||| | ||||||||||||||  |||  ||||||| | ||||||| |||     
T  11819890 aagaagctaaattagcccacccaaattgacactagagtgaatcgaacctgagaccttgaggaggagcacactcccaagtcccaagcctataccactaggg 11819791  T
Q  116 caacccaaatgggtt 130  Q
    |||||||||||||||    
T  11819790 caacccaaatgggtt 11819776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 33727827 - 33727905
Alignment:
Q  9 ttttatttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac 87  Q
    |||| ||||||||||||||||||| ||||||||||||||| |||| || | ||   |||||| | ||||||||||||||    
T  33727827 ttttttttaagaagctaaattagcccatccaaattgacactagagggaatcgaacctgagaccttgaggaggagcacac 33727905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 127
Target Start/End: Original strand, 35690048 - 35690137
Alignment:
Q  39 aaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgg 127  Q
    |||||||||||||||||| | ||   |||||| | ||||||||||| || || |||||||||| ||||||||| |||||||| |||||||    
T  35690048 aaattgacaccagagagaatcgaacctgagaccttgaggaggagcaaacacccagatcccaagccaataccactaggccaacacaaatgg 35690137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 43292390 - 43292442
Alignment:
Q  9 ttttatttaagaagctaaattagctcatccaaattgacaccagagagatttga 61  Q
    |||| |||||||||||||||||| ||||| ||||||||||| |||||| ||||    
T  43292390 ttttttttaagaagctaaattagttcatctaaattgacaccggagagaattga 43292442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 2691426 - 2691391
Alignment:
Q  9 ttttatttaagaagctaaattagctcatccaaattg 44  Q
    |||| |||||||||||||||||||||||||||||||    
T  2691426 ttttttttaagaagctaaattagctcatccaaattg 2691391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 5801113 - 5801046
Alignment:
Q  65 tgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggttt 131  Q
    ||||||||||||  ||||||||| || ||||||||||  |||||||||||| |||||||| |||||||    
T  5801113 tgagacgtcgagacggagcacactcctagatcccaagctaataccaccaggtcaacccaagtgggttt 5801046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 19703497 - 19703564
Alignment:
Q  65 tgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggccaacccaaatgggttt 131  Q
    |||||| | |||||||||||||| | ||| ||||||| ||||||||| |||||||||||| |||||||    
T  19703497 tgagaccttgaggaggagcacactctcaggtcccaagccaataccactaggccaacccaagtgggttt 19703564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 43594272 - 43594319
Alignment:
Q  9 ttttatttaagaagctaaattagctcatccaaattgacaccagagaga 56  Q
    |||| |||||||| |||||||||| ||||||||||||||| |||||||    
T  43594272 ttttttttaagaaactaaattagcccatccaaattgacactagagaga 43594319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 6536634 - 6536540
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccac 110  Q
    |||||||||||||| | || | |||||| ||||||||||| ||||   |||||| | |||||||||||||| || || ||||||| |||||||||    
T  6536634 aagaagctaaattaacccacctaaattggcaccagagagaattgaacctgagaccttgaggaggagcacactcctaggtcccaagccaataccac 6536540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 24351690 - 24351760
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac 87  Q
    ||||||||||||||||||||||||||||| |||  ||||| ||||   |||||| || |||||||| ||||    
T  24351690 aagaagctaaattagctcatccaaattgataccgaagagaattgaacttgagacctcaaggaggagtacac 24351760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 30483846 - 30483960
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 115  Q
    |||||| ||||||||  ||| ||||||| ||| ||||||| ||||   ||||||   |||||||||||||| || | |||||||| |||||||||  |||    
T  30483846 aagaagataaattagtccattcaaattggcacaagagagaattgaacctgagactctgaggaggagcacactcccatatcccaagccaataccactgggc 30483945  T
Q  116 caacccaaatgggtt 130  Q
    |||||||| ||||||    
T  30483946 caacccaagtgggtt 30483960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 29858059 - 29858124
Alignment:
Q  65 tgagacgtcgaggaggagcacacgcca-gatcccaagtcaataccaccaggccaacccaaatgggt 129  Q
    |||||| |||||||||||||||| ||  | ||||||| ||||||||||||||||| |||| |||||    
T  29858059 tgagacctcgaggaggagcacactccctggtcccaagccaataccaccaggccaatccaagtgggt 29858124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 22268973 - 22269013
Alignment:
Q  94 tcccaagtcaataccaccaggccaacccaaatgggtttggt 134  Q
    ||||||| ||| |||||||||||||||||| ||||||||||    
T  22268973 tcccaagccaacaccaccaggccaacccaagtgggtttggt 22269013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 30774695 - 30774795
Alignment:
Q  14 tttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccacca 112  Q
    ||||||||||||||||||||||   |||||| || | |||| | | || | |||||| |||||||||| |||||  |||||||||||  |||||||||||    
T  30774695 tttaagaagctaaattagctcacttaaattggcatcggagaaaatcgaatctgagacctcgaggaggaacacacttccagatcccaaaccaataccacca 30774794  T
Q  113 g 113  Q
    |    
T  30774795 g 30774795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 131
Target Start/End: Complemental strand, 33549226 - 33549103
Alignment:
Q  9 ttttatttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaatac 107  Q
    |||| |||||||||||||||||||||| | |||||| || | |||||| | ||   |||||| |||||||||||||||| || || ||||||| ||||||    
T  33549226 ttttttttaagaagctaaattagctcacctaaattggcatccgagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaatac 33549127  T
Q  108 caccaggccaacccaaatgggttt 131  Q
    |||||| ||||||||| |||||||    
T  33549126 caccagaccaacccaagtgggttt 33549103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 131
Target Start/End: Original strand, 12234461 - 12234584
Alignment:
Q  9 ttttatttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaatac 107  Q
    |||| ||||||||||||||||| | |||| ||||||||||  |||||| | ||   |||||| |||||  ||||||||| || || ||||||||||||||    
T  12234461 ttttttttaagaagctaaattatcccatctaaattgacactggagagaatcgaacctgagacctcgagagggagcacactcccaggtcccaagtcaatac 12234560  T
Q  108 caccaggccaacccaaatgggttt 131  Q
    ||||||||||||| || |||||||    
T  12234561 caccaggccaacctaagtgggttt 12234584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 24641207 - 24641266
Alignment:
Q  72 tcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    |||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||    
T  24641207 tcgaggaggagcacactcccagatcccaagtcaataccaccaagccaacccaaatgggtt 24641266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 31622953 - 31623068
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggc 115  Q
    |||||||||||||||| || ||||||||||||| ||| ||||  |   |||||| ||||||||||||||||  |||| ||||||| |||||||||| | |    
T  31622953 aagaagctaaattagcccacccaaattgacaccggagtgattcaaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccggac 31623052  T
Q  116 caacccaaatgggttt 131  Q
    |||||||| |||||||    
T  31623053 caacccaagtgggttt 31623068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 123
Target Start/End: Original strand, 6776586 - 6776676
Alignment:
Q  34 catccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaa 123  Q
    |||||||||||| |||||||||| |  |   |||||| |||||||||||||||| || |||||||||| ||||||||||||||||||||||    
T  6776586 catccaaattgaaaccagagagaatcaaacttgagacatcgaggaggagcacacccccagatcccaagccaataccaccaggccaacccaa 6776676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 6758384 - 6758497
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggc 115  Q
    ||||||||||||| || || | |||||||||||||||||| | ||   |||||| |||||| |||||||||  ||| |||| ||| ||||||||||||||    
T  6758384 aagaagctaaatttgcccacctaaattgacaccagagagaatcgatcttgagacctcgaggtggagcacactcccaaatcctaagccaataccaccaggc 6758483  T
Q  116 caacccaaatgggt 129  Q
    |||| ||| |||||    
T  6758484 caacacaagtgggt 6758497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 119
Target Start/End: Complemental strand, 28364044 - 28363948
Alignment:
Q  24 taaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggccaac 119  Q
    ||||||||| ||||||||||||||||||||| | | || | |||||| | |||||||||||||| | ||||||||||  ||||||||| | ||||||    
T  28364044 taaattagcccatccaaattgacaccagagataatcgaatctgagaccttgaggaggagcacactcgcagatcccaaaccaataccactatgccaac 28363948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 3715574 - 3715452
Alignment:
Q  9 ttttatttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaatac 107  Q
    |||||||||||||||||||| ||| || | ||||||||||  |||||| | ||   |||||| |||| ||| |||| || || ||||| |||||||||||    
T  3715574 ttttatttaagaagctaaatcagcccacctaaattgacactggagagaatcgaacttgagacctcgacgagaagcatactcccagatctcaagtcaatac 3715475  T
Q  108 caccaggccaacccaaatgggtt 130  Q
    ||| || |||||| |||||||||    
T  3715474 cactagcccaaccaaaatgggtt 3715452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 12188322 - 12188381
Alignment:
Q  74 gaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggtttg 132  Q
    |||||||||||||| || || ||||||| ||||||||| |||||||||||| ||||||||    
T  12188322 gaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtttg 12188381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 128
Target Start/End: Original strand, 32613175 - 32613214
Alignment:
Q  89 ccagatcccaagtcaataccaccaggccaacccaaatggg 128  Q
    ||||| ||||||||||||||||||||||||||||| ||||    
T  32613175 ccagaccccaagtcaataccaccaggccaacccaagtggg 32613214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 346597 - 346551
Alignment:
Q  64 atgagacgtcgaggaggagcacacgccagatcccaagtcaataccac 110  Q
    ||||||| |||||||| ||||||| |||| |||||||||||||||||    
T  346597 atgagacctcgaggagaagcacactccaggtcccaagtcaataccac 346551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 8268755 - 8268641
Alignment:
Q  14 tttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccacca 112  Q
    ||||||||| ||||||| |||||||||||| |||| ||| ||| | ||  ||| ||| | ||||||||||||||  ||| ||| |||| ||| |||| ||    
T  8268755 tttaagaagttaaattaactcatccaaattcacactagatagaatcgaacatgtgactttgaggaggagcacactcccaaatctcaaggcaacaccatca 8268656  T
Q  113 ggccaacccaaatgg 127  Q
    | |||||||||||||    
T  8268655 gaccaacccaaatgg 8268641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 12253823 - 12253789
Alignment:
Q  14 tttaagaagctaaattagctcatccaaattgacac 48  Q
    ||||||||| |||||||||||||||||||||||||    
T  12253823 tttaagaagataaattagctcatccaaattgacac 12253789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 21418536 - 21418470
Alignment:
Q  65 tgagacgtcgaggaggagcacacgccaga-tcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    |||||| | |||||||||||||| ||  | ||||||| |||||||||||||||||||||| ||||||    
T  21418536 tgagacatggaggaggagcacactcccaagtcccaagccaataccaccaggccaacccaactgggtt 21418470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 30127466 - 30127400
Alignment:
Q  65 tgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    |||||| |||| ||||||||||| || ||| |||||| |||||||||||| ||||||||| ||||||    
T  30127466 tgagacctcgaagaggagcacactcccagaccccaagccaataccaccagaccaacccaagtgggtt 30127400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 31282556 - 31282523
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacacca 50  Q
    ||||||||||||||||||| ||||||||||||||    
T  31282556 aagaagctaaattagctcacccaaattgacacca 31282523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 123
Target Start/End: Complemental strand, 34444839 - 34444810
Alignment:
Q  94 tcccaagtcaataccaccaggccaacccaa 123  Q
    ||||||||||||||||||||||||||||||    
T  34444839 tcccaagtcaataccaccaggccaacccaa 34444810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 130
Target Start/End: Complemental strand, 28028566 - 28028530
Alignment:
Q  94 tcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  28028566 tcccaagtcaacaccaccaggccaacccaagtgggtt 28028530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 32201905 - 32201961
Alignment:
Q  75 aggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    ||||||||||||| |  |||||||||| ||||||||||| | |||||||||||||||    
T  32201905 aggaggagcacactctgagatcccaagccaataccaccaagtcaacccaaatgggtt 32201961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 33931982 - 33932014
Alignment:
Q  91 agatcccaagtcaataccaccaggccaacccaa 123  Q
    |||||||||||||||||||||||| ||||||||    
T  33931982 agatcccaagtcaataccaccaggtcaacccaa 33932014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 25931120 - 25931005
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggc 115  Q
    ||||| |||||||| ||||||||||||||||||| ||||| | || | |||||| |||||||  | ||||| | ||| ||||||  ||||||||||||||    
T  25931120 aagaaactaaattaactcatccaaattgacaccaaagagaatcgaatctgagacttcgaggataaacacactctcaggtcccaaaccaataccaccaggc 25931021  T
Q  116 caacccaaatgggttt 131  Q
    ||||||||||||||||    
T  25931020 caacccaaatgggttt 25931005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 37480189 - 37480073
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggc 115  Q
    |||||||||||||||| || ||||||||  ||| | |||| | ||   |||||| | |||||||||||||| | ||| ||||||| ||||||||||||||    
T  37480189 aagaagctaaattagcccacccaaattgggaccggggagaatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaataccaccaggc 37480090  T
Q  116 caacccaaatgggtttg 132  Q
    |||||||| ||||||||    
T  37480089 caacccaagtgggtttg 37480073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 131
Target Start/End: Original strand, 21195630 - 21195753
Alignment:
Q  9 ttttatttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaatac 107  Q
    |||| ||||||||||||||||||| ||||||||||||||| |||| || | ||   |||||| | ||||||||||||||  |||  | ||||| | ||||    
T  21195630 ttttttttaagaagctaaattagcccatccaaattgacactagagggaatcgaacctgagaccttgaggaggagcacactcccaagttccaagcctatac 21195729  T
Q  108 caccaggccaacccaaatgggttt 131  Q
    ||| ||| ||||||||||||||||    
T  21195730 cactagggcaacccaaatgggttt 21195753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 39715058 - 39714991
Alignment:
Q  65 tgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggttt 131  Q
    |||||| |||||||||||||||| || || ||||||||||||||||||| |||||||||| |||||||    
T  39715058 tgagacctcgaggaggagcacactcccaggtcccaagtcaataccaccatgccaacccaagtgggttt 39714991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 42327349 - 42327471
Alignment:
Q  9 ttttatttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaatac 107  Q
    |||| ||||||| ||||||||||| || |||||||| ||||  ||||| | ||   |||||| | |||||||||||||| || || ||||||| ||||||    
T  42327349 ttttttttaagatgctaaattagcccacccaaattggcaccgaagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaatac 42327448  T
Q  108 caccaggccaacccaaatgggtt 130  Q
    ||| |||||||||||| ||||||    
T  42327449 cactaggccaacccaagtgggtt 42327471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 34041598 - 34041665
Alignment:
Q  65 tgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggccaacccaaatgggttt 131  Q
    |||||| | |||||||||||||| | ||||||| ||||||||||||| |||||||||||| |||||||    
T  34041598 tgagaccttgaggaggagcacactctcagatcctaagtcaataccactaggccaacccaagtgggttt 34041665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 130
Target Start/End: Complemental strand, 41202357 - 41202250
Alignment:
Q  24 taaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaaccca 122  Q
    ||||||||  |||||||||||||| |||||| | ||||   | |||| ||||||||||||| || || ||||| || |||||||||||||| ||||||||    
T  41202357 taaattagtccatccaaattgacatcagagaaaattgaacctaagacttcgaggaggagcatactcccagatctcaggtcaataccaccagaccaaccca 41202258  T
Q  123 aatgggtt 130  Q
    ||| ||||    
T  41202257 aataggtt 41202250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 1435177 - 1435064
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 115  Q
    |||||||||||||||| || |||||||||||||||||||| | ||   |||||| | |||||| ||||||| || | |||||||| || |||||| | ||    
T  1435177 aagaagctaaattagcccacccaaattgacaccagagagaatcga-actgagaccttgaggagaagcacactcctaaatcccaagccagtaccactatgc 1435079  T
Q  116 caacccaaatgggtt 130  Q
    |||||||| ||||||    
T  1435078 caacccaagtgggtt 1435064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 133
Target Start/End: Original strand, 29197385 - 29197455
Alignment:
Q  64 atgagacgtcgaggaggagcacacgccaga-tcccaagtcaataccaccaggccaacccaaatgggtttgg 133  Q
    ||||||| || ||||||||||||| ||  | ||||||||||||||||||| |||||||||| |||||||||    
T  29197385 atgagacatcaaggaggagcacactcccaagtcccaagtcaataccaccaagccaacccaagtgggtttgg 29197455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 23230567 - 23230681
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggc 115  Q
    |||||| |||||||||||||||||||||||||  |||||| ||||   ||  || | ||||||||||||||  |||| |||||| ||||||||| | | |    
T  23230567 aagaagttaaattagctcatccaaattgacactggagagaattgaacctggaactttgaggaggagcacactcccagttcccaaatcaatacca-ctgac 23230665  T
Q  116 caacccaaatgggttt 131  Q
    |||||||| |||||||    
T  23230666 caacccaattgggttt 23230681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 3001435 - 3001386
Alignment:
Q  75 aggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaa 123  Q
    ||||||||||||| || ||||| |||||||||||||| ||||||||||||    
T  3001435 aggaggagcacactcctagatctcaagtcaataccactaggccaacccaa 3001386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 4438998 - 4439055
Alignment:
Q  74 gaggaggagcacacgc-cagatcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    |||||||||||||| | |||||||||||| |||||||  |||||||||||| ||||||    
T  4438998 gaggaggagcacactctcagatcccaagttaataccattaggccaacccaagtgggtt 4439055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 19244222 - 19244109
Alignment:
Q  18 agaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggcc 116  Q
    |||| |||||||||| ||  ||||||| ||||||||||| | ||   |||||| | | |||||||||||| | ||| ||||||||||||||||  || ||    
T  19244222 agaaactaaattagcccactcaaattggcaccagagagaatcgaacctgagaccttggggaggagcacactctcaggtcccaagtcaataccagtagacc 19244123  T
Q  117 aacccaaatgggtt 130  Q
    ||||||| ||||||    
T  19244122 aacccaagtgggtt 19244109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 37755933 - 37756046
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 115  Q
    |||||||||||||||| ||  ||||||| || ||||| || | ||   |||||| ||||| |||||||||  || || ||||||| ||||||||||| ||    
T  37755933 aagaagctaaattagcccactcaaattggcatcagagggagtcgaacttgagacctcgagtaggagcacattcccaggtcccaagccaataccaccaagc 37756032  T
Q  116 caacccaaatgggt 129  Q
    |||||||| |||||    
T  37756033 caacccaagtgggt 37756046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 7799052 - 7799112
Alignment:
Q  72 tcgaggaggagcacacgccaga-tcccaagtcaataccaccaggccaacccaaatgggttt 131  Q
    |||||||||||||||| ||  | ||||||| ||||||||||||| |||||||| |||||||    
T  7799052 tcgaggaggagcacactcccaagtcccaagccaataccaccaggacaacccaagtgggttt 7799112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 11127965 - 11128001
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagag 53  Q
    |||||||||||||||| |||| |||||||||||||||    
T  11127965 aagaagctaaattagcacatctaaattgacaccagag 11128001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 15825670 - 15825710
Alignment:
Q  9 ttttatttaagaagctaaattagctcatccaaattgacacc 49  Q
    |||| ||||||||||||||||||||||  ||||||||||||    
T  15825670 ttttttttaagaagctaaattagctcaatcaaattgacacc 15825710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 16918597 - 16918653
Alignment:
Q  74 gaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggt 129  Q
    |||||||||||||| || |||||||||  ||||||||| |||||||||||| |||||    
T  16918597 gaggaggagcacactcccagatcccaaaccaataccactaggccaacccaagtgggt 16918653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 130
Target Start/End: Complemental strand, 18259786 - 18259730
Alignment:
Q  75 aggaggagcacacgc-cagatcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    ||||||||||||| | || ||| |||| |||||||||||||||||| ||||||||||    
T  18259786 aggaggagcacactctcaaatctcaagccaataccaccaggccaactcaaatgggtt 18259730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 130
Target Start/End: Complemental strand, 32106602 - 32106566
Alignment:
Q  94 tcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  32106602 tcccaagtcaacaccaccaggccaacccaagtgggtt 32106566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 41595 - 41709
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggc 115  Q
    |||| ||||||||||| || ||||||||||| |||||||| ||||   |||||| ||||||||||||| || | |||||| |||| ||||||||| ||||    
T  41595 aagaggctaaattagcccacccaaattgacatcagagagaattgaacctgagacctcgaggaggagcatactctcagatctcaagccaataccactaggc 41694  T
Q  116 caacccaaatgggtt 130  Q
    |||||||| ||||||    
T  41695 caacccaagtgggtt 41709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 15137667 - 15137553
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 115  Q
    ||||| |||||||||| || |||||||||||||||||||| |  |   |||||| | |||||||||||||| || | ||||||||||| |||||||||||    
T  15137667 aagaaactaaattagcccacccaaattgacaccagagagaatctaacctgagaccttgaggaggagcacactcctaaatcccaagtcagtaccaccaggc 15137568  T
Q  116 caacccaaatgggtt 130  Q
    |||||||| ||||||    
T  15137567 caacccaagtgggtt 15137553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 89 - 132
Target Start/End: Complemental strand, 35119424 - 35119381
Alignment:
Q  89 ccagatcccaagtcaataccaccaggccaacccaaatgggtttg 132  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  35119424 ccagatcccaagtcaataccactaggccaacccaaatgggtttg 35119381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 45709718 - 45709785
Alignment:
Q  65 tgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggccaacccaaatgggttt 131  Q
    |||||| |||||||||||||||| | |||||||||||  |||||||| ||||||||||||||||||||    
T  45709718 tgagacctcgaggaggagcacactctcagatcccaagctaataccactaggccaacccaaatgggttt 45709785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 24438201 - 24438248
Alignment:
Q  9 ttttatttaagaagctaaattagctcatccaaattgacaccagagaga 56  Q
    |||| ||||||||||||||||||| ||| |||||||||||||||||||    
T  24438201 ttttttttaagaagctaaattagcccattcaaattgacaccagagaga 24438248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 41519227 - 41519333
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 115  Q
    |||||||||||||||| || | |||||||||| |||||||   ||   |||||| | |||||||||||||| || | |||||||||||||||||| ||||    
T  41519227 aagaagctaaattagcccacctaaattgacac-agagagaagcgaacctgagaccttgaggaggagcacactcctaaatcccaagtcaataccactaggc 41519325  T
Q  116 caacccaa 123  Q
    ||||||||    
T  41519326 caacccaa 41519333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 43663057 - 43663164
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 115  Q
    |||||||||||||||  || ||||||||| ||| |||||||| ||   |||||  |||||||||| ||| | || || |||||||||||||||| |||||    
T  43663057 aagaagctaaattagtccacccaaattgataccggagagattcgaacctgagatctcgaggaggaccacgctcctaggtcccaagtcaataccatcaggc 43663156  T
Q  116 caacccaa 123  Q
    ||||||||    
T  43663157 caacccaa 43663164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 22760929 - 22760863
Alignment:
Q  65 tgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    |||||| | |||||||||||||| || || |||||||||||||||||||| ||||||||| ||||||    
T  22760929 tgagaccttgaggaggagcacactcccaggtcccaagtcaataccaccagaccaacccaagtgggtt 22760863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 130
Target Start/End: Original strand, 23301612 - 23301678
Alignment:
Q  65 tgagacgtcgaggaggagcacacgccaga-tcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    |||||| || ||||||||||||| ||  | |||||||||||||||||||||||||||||| ||||||    
T  23301612 tgagacctcaaggaggagcacactcccaagtcccaagtcaataccaccaggccaacccaagtgggtt 23301678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 26459372 - 26459486
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 115  Q
    ||||||||||| || | | | ||||||| ||||||||||| | ||   |||||| | |||||||||||||| || || ||||||| ||||||||| ||||    
T  26459372 aagaagctaaactaaccccttcaaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggc 26459471  T
Q  116 caacccaaatgggtt 130  Q
    |||||||| ||||||    
T  26459472 caacccaagtgggtt 26459486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 48772004 - 48771938
Alignment:
Q  65 tgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    |||||| || ||||||||||||| || |||||||||| ||||||||||| |||||||||| ||||||    
T  48772004 tgagacctcaaggaggagcacactcccagatcccaagccaataccaccaagccaacccaagtgggtt 48771938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 25021343 - 25021411
Alignment:
Q  63 tatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    |||||||| | |||||||||||||| || || ||||||| ||||||||| |||||||||||| ||||||    
T  25021343 tatgagactttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 25021411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 130
Target Start/End: Complemental strand, 4161327 - 4161288
Alignment:
Q  91 agatcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    |||||||||| |||||||||||| ||||||||||||||||    
T  4161327 agatcccaagccaataccaccagaccaacccaaatgggtt 4161288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 7721483 - 7721372
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggc 115  Q
    ||||||||||||||   ||||||||||||||||||||||| | ||  ||||||| | ||||||||| ||||  |||| ||||||  |||||||||  | |    
T  7721483 aagaagctaaattattccatccaaattgacaccagagagaatcgaacatgagaccttgaggaggagtacactcccaggtcccaaaccaataccacttgac 7721384  T
Q  116 caacccaaatgg 127  Q
    || |||||||||    
T  7721383 caccccaaatgg 7721372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 23552184 - 23552117
Alignment:
Q  65 tgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggttt 131  Q
    |||||| | |||||||||||||| || || ||||||||||||| ||| |||||||||||| |||||||    
T  23552184 tgagaccttgaggaggagcacactcccaggtcccaagtcaatagcactaggccaacccaagtgggttt 23552117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 130
Target Start/End: Complemental strand, 7801234 - 7801180
Alignment:
Q  77 gaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    ||||||||||| || || ||||||||||||||||||||||||| |||| ||||||    
T  7801234 gaggagcacactcccaggtcccaagtcaataccaccaggccaaaccaagtgggtt 7801180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 20335793 - 20335907
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggc 115  Q
    |||||| ||||||||| |||||||||||||| | | |||| | ||   |||||| ||||||||||||||||  |||  ||||||| ||||||| | || |    
T  20335793 aagaagttaaattagcccatccaaattgacatcggtgagaatcgaacctgagacctcgaggaggagcacactcccaagtcccaagccaatacctctagac 20335892  T
Q  116 caacccaaatgggtt 130  Q
    |||||||| ||||||    
T  20335893 caacccaagtgggtt 20335907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 23595786 - 23595736
Alignment:
Q  74 gaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaa 123  Q
    |||||||||||||| || ||||| ||||||||||||||||| |||||||||    
T  23595786 gaggaggagcacactccgagatctcaagtcaataccaccagaccaacccaa 23595736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 25590725 - 25590611
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggc 115  Q
    |||||||||||||||| ||  ||||||||||||  ||| | | ||    ||||| ||||||||||||||||  ||||||| |||| |||||||| ||||     
T  25590725 aagaagctaaattagcccactcaaattgacaccgaagaaaatcgaacccgagacctcgaggaggagcacactcccagatctcaagccaataccaacaggt 25590626  T
Q  116 caacccaaatgggtt 130  Q
    |||||||| ||||||    
T  25590625 caacccaagtgggtt 25590611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 130
Target Start/End: Original strand, 25956314 - 25956368
Alignment:
Q  77 gaggagcacacgcca-gatcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    ||||||||||| ||| | ||||||| ||||||||| |||||||||||||||||||    
T  25956314 gaggagcacactccaaggtcccaagccaataccactaggccaacccaaatgggtt 25956368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 26526347 - 26526289
Alignment:
Q  74 gaggaggagcacacgc-cagatcccaagtcaataccaccaggccaacccaaatgggttt 131  Q
    |||||||||||||| | || |||| |||||||||||||||| |||| ||||||||||||    
T  26526347 gaggaggagcacactctcaaatcctaagtcaataccaccagaccaatccaaatgggttt 26526289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 41519068 - 41519142
Alignment:
Q  13 atttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac 87  Q
    |||||||||||||||||||| || ||||||||||||| |||| | | || | |||||| | ||| ||||||||||    
T  41519068 atttaagaagctaaattagcccacccaaattgacaccggagataatcgaatctgagaccttgagaaggagcacac 41519142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 43590973 - 43590907
Alignment:
Q  65 tgagacgtcgaggaggagcacacgccaga-tcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    |||||| | |||||||||||||| ||  | ||||||| |||||||||||||||||||||| ||||||    
T  43590973 tgagacattgaggaggagcacactcccaagtcccaagccaataccaccaggccaacccaactgggtt 43590907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 106
Target Start/End: Original strand, 279908 - 280005
Alignment:
Q  9 ttttatttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgccagatcccaagtcaata 106  Q
    |||| ||||||||||||||||||| || |||||||| |||| |||||| ||||   |||||| |  |||||||| |||| ||  |||||||| |||||    
T  279908 ttttttttaagaagctaaattagcccacccaaattggcaccggagagaattgaacctgagaccttaaggaggagtacactcccaatcccaagccaata 280005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 41487398 - 41487361
Alignment:
Q  94 tcccaagtcaataccaccaggccaacccaaatgggttt 131  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  41487398 tcccaagccaataccaccaggccaacccaagtgggttt 41487361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 8108696 - 8108599
Alignment:
Q  14 tttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccacca 112  Q
    ||||| ||||||||||| |||||||||||||||  |||| ||| | ||   |||||| || ||||||||| ||| || | ||||||||||||||||||||    
T  8108696 tttaaaaagctaaattaactcatccaaattgac--cagacagaatcgaacctgagacctcaaggaggagcgcactcccatatcccaagtcaataccacca 8108599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 128
Target Start/End: Complemental strand, 21854614 - 21854550
Alignment:
Q  65 tgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatggg 128  Q
    |||||| | |||||||||||||| || ||||||| || |||||||| ||||||||||||| ||||    
T  21854614 tgagactttgaggaggagcacactcccagatccctagccaataccatcaggccaacccaagtggg 21854550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 32359273 - 32359225
Alignment:
Q  9 ttttatttaagaagctaaattagctcatccaaattgacaccagagagat 57  Q
    |||| |||| ||| |||||||| |||||||||||||||||| |||||||    
T  32359273 ttttttttatgaatctaaattacctcatccaaattgacacctgagagat 32359225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 33181164 - 33181208
Alignment:
Q  9 ttttatttaagaagctaaattagctcatccaaattgacaccagag 53  Q
    |||| ||||||||||||||||||| || |||||||||||| ||||    
T  33181164 ttttttttaagaagctaaattagcccacccaaattgacactagag 33181208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 42262057 - 42262145
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagtcaa 104  Q
    |||||| ||||||| | ||||||| ||| ||| ||||||| |||| | |||||| |  ||||||||||||| | |||||||||||||||    
T  42262057 aagaaggtaaattaacccatccaatttggcacaagagagaattgaatctgagacctttaggaggagcacactctcagatcccaagtcaa 42262145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 48582799 - 48582843
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttga 61  Q
    ||||||||||||||||||| |||||||| || |||||||| ||||    
T  48582799 aagaagctaaattagctcacccaaattggcatcagagagagttga 48582843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 28635810 - 28635696
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 115  Q
    |||||||||||||||| || |||||||| ||||||||||| | ||   | |||| || ||||||||||||| || ||||||||||||| ||||||||||     
T  28635810 aagaagctaaattagcccacccaaattggcaccagagagaatcgaacctaagacctccaggaggagcacactcccagatcccaagtcagtaccaccagga 28635711  T
Q  116 caacccaaatgggtt 130  Q
    |||||||| ||||||    
T  28635710 caacccaagtgggtt 28635696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 130
Target Start/End: Complemental strand, 13496369 - 13496241
Alignment:
Q  3 aaaatgttttatttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagt 101  Q
    ||||| |||| || ||||||||||||||||||||||||||||  |||||| ||| | ||  | ||||| |||| ||||| ||||| | ||  ||||||||    
T  13496369 aaaatatttttttgaagaagctaaattagctcatccaaattgttaccagaaagaatcgaacacgagacctcgaagaggaacacactcacatgtcccaagt 13496270  T
Q  102 caataccaccaggccaacccaaatgggtt 130  Q
    ||||||||||| |||||||||| ||||||    
T  13496269 caataccaccatgccaacccaagtgggtt 13496241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 131
Target Start/End: Original strand, 51250476 - 51250599
Alignment:
Q  9 ttttatttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaatac 107  Q
    |||| ||||||||||||||||||| || |||||||| |||| ||| || | ||   |||||  | |||| ||||||||| || |||||||||| ||||||    
T  51250476 ttttttttaagaagctaaattagcccacccaaattggcaccggagggaatcgaacttgagatcttgaggcggagcacactcccagatcccaagccaatac 51250575  T
Q  108 caccaggccaacccaaatgggttt 131  Q
    |||||||||||||||| |||||||    
T  51250576 caccaggccaacccaagtgggttt 51250599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 51948602 - 51948480
Alignment:
Q  9 ttttatttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaatac 107  Q
    |||| ||||||||| ||||||||  |||  ||||||||||  |||||| ||||   |||||| ||||||||| |||||| || |||||||||||||||||    
T  51948602 ttttttttaagaagttaaattagtccatttaaattgacactggagagaattgaacctgagacctcgaggaggggcacactcctagatcccaagtcaatac 51948503  T
Q  108 caccaggccaacccaaatgggtt 130  Q
     |||||| |||||||| ||||||    
T  51948502 taccaggacaacccaagtgggtt 51948480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 7949416 - 7949531
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 115  Q
    |||||||||||||||| || | |||||||||||||||||| | ||   |||||| | |||||||||||||| || || ||||||| ||||||| | ||||    
T  7949416 aagaagctaaattagcccacctaaattgacaccagagagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaataccgctaggc 7949515  T
Q  116 caacccaaatgggttt 131  Q
    || ||||| |||||||    
T  7949516 cagcccaagtgggttt 7949531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 47044783 - 47044717
Alignment:
Q  65 tgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    |||||| ||||||||||||| || | ||||||||||||||||||||||||||||| |||| ||||||    
T  47044783 tgagacctcgaggaggagcaaactctcagatcccaagtcaataccaccaggccaatccaagtgggtt 47044717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 9241037 - 9241101
Alignment:
Q  67 agacgtcgaggaggagcacacg-ccagatcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    |||| ||||| ||||||||||  |||||||||||| |||||||||||||||||||||| ||||||    
T  9241037 agacctcgagcaggagcacactaccagatcccaagccaataccaccaggccaacccaagtgggtt 9241101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 19229167 - 19229283
Alignment:
Q  14 tttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgccagatcccaagtcaataccaccag 113  Q
    ||||| ||||||||| ||| || ||||||||  ||||| |||| | ||   |||||| |||||||||||||||  | |  ||||| | ||||||||||||    
T  19229167 tttaataagctaaataagcccacccaaattggtaccagggagaatcgaacctgagacctcgaggaggagcacattctaagtcccaggccaataccaccag 19229266  T
Q  114 gccaacccaaatgggtt 130  Q
    |||||||||||||||||    
T  19229267 gccaacccaaatgggtt 19229283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 21660098 - 21660213
Alignment:
Q  9 ttttatttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaatac 107  Q
    |||| ||||||||||||||||||   | | |||||||||| ||||| | | ||   |||||| ||||||| |||||||| || ||||| |||||||||||    
T  21660098 ttttttttaagaagctaaattagtctacctaaattgacactagagataatcgaacttgagacctcgaggaagagcacactcccagatctcaagtcaatac 21660197  T
Q  108 caccaggccaacccaa 123  Q
    |||||| |||||||||    
T  21660198 caccagaccaacccaa 21660213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 21668862 - 21668977
Alignment:
Q  9 ttttatttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaatac 107  Q
    |||| ||||||||||||||||||   | | |||||||||| ||||| | | ||   |||||| ||||||| |||||||| || ||||| |||||||||||    
T  21668862 ttttttttaagaagctaaattagtctacctaaattgacactagagataatcgaacttgagacctcgaggaagagcacactcccagatctcaagtcaatac 21668961  T
Q  108 caccaggccaacccaa 123  Q
    |||||| |||||||||    
T  21668962 caccagaccaacccaa 21668977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 19238588 - 19238653
Alignment:
Q  66 gagacgtcgaggaggagcacacgccaga-tcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    ||||| |||||||||||||||| ||  | ||||||| |||||||||||||||||||||| ||||||    
T  19238588 gagacctcgaggaggagcacactcccaagtcccaagccaataccaccaggccaacccaagtgggtt 19238653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 37109334 - 37109427
Alignment:
Q  38 caaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    ||||||| ||||||||||| | ||   |||||| | |||||||||||||| || || ||||||| ||||||||| |||||||||||| ||||||    
T  37109334 caaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 37109427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 55427159 - 55427276
Alignment:
Q  14 tttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccacca 112  Q
    ||||| ||||||||||||| || |||||||| ||||   |||| | ||   |||||| ||||| ||||||| || || || ||||||| |||||||||||    
T  55427159 tttaataagctaaattagcccacccaaattggcaccgcggagaatcgaacctgagacctcgagcaggagcagactcccaggtcccaagccaataccacca 55427258  T
Q  113 ggccaacccaaatgggtt 130  Q
    ||||||||||| ||||||    
T  55427259 ggccaacccaagtgggtt 55427276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 132
Target Start/End: Original strand, 27965545 - 27965588
Alignment:
Q  89 ccagatcccaagtcaataccaccaggccaacccaaatgggtttg 132  Q
    |||||||||||| ||||||||| |||||||||||| ||||||||    
T  27965545 ccagatcccaagccaataccactaggccaacccaagtgggtttg 27965588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 13015549 - 13015471
Alignment:
Q  9 ttttatttaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac 87  Q
    |||| ||||| ||||||||||| | || | ||||||||||| |||||| | ||  ||||||| ||||||||||||||||    
T  13015549 ttttttttaataagctaaattaacccacctaaattgacacctgagagaatcgaacatgagacttcgaggaggagcacac 13015471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 130
Target Start/End: Complemental strand, 46545819 - 46545711
Alignment:
Q  23 ctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggccaaccc 121  Q
    |||||||||  |||| ||||||||| |||||| | | || | |||||  | |||||||||||||| | ||| || |||| ||||||||| ||||||||||    
T  46545819 ctaaattagtccatctaaattgacatcagagaaaatcgaatctgagatcttgaggaggagcacactctcaggtctcaagccaataccactaggccaaccc 46545720  T
Q  122 aaatgggtt 130  Q
    || ||||||    
T  46545719 aagtgggtt 46545711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 123
Target Start/End: Complemental strand, 11624 - 11535
Alignment:
Q  35 atccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaa 123  Q
    ||||||||| |||||||||||| | ||   |||||| |||||||||||||||| || |||||||||| |||||||||||||||| |||||    
T  11624 atccaaattaacaccagagagaatcgaacctgagacctcgaggaggagcacactcccagatcccaagccaataccaccaggccatcccaa 11535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 15285 - 15399
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 115  Q
    |||||||||||||||| || | |||||| || | |||||| | ||   |||||| |||||||||||||||| || || ||||||| |||||||||||| |    
T  15285 aagaagctaaattagcccacctaaattggcatccgagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagac 15384  T
Q  116 caacccaaatgggtt 130  Q
    |||||||| ||||||    
T  15385 caacccaagtgggtt 15399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 130
Target Start/End: Original strand, 12465 - 12498
Alignment:
Q  97 caagtcaataccaccaggccaacccaaatgggtt 130  Q
    ||||||||||||||||||||||||||||||||||    
T  12465 caagtcaataccaccaggccaacccaaatgggtt 12498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 130
Target Start/End: Original strand, 22793 - 22826
Alignment:
Q  97 caagtcaataccaccaggccaacccaaatgggtt 130  Q
    ||||||||||||||||||||||||||||||||||    
T  22793 caagtcaataccaccaggccaacccaaatgggtt 22826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1367 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1367
Description:

Target: scaffold1367; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 850 - 909
Alignment:
Q  65 tgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaa 123  Q
    |||||| |||||||||||||||  || |||||||||| |||||||||||||||| |||||    
T  850 tgagacttcgaggaggagcacattcccagatcccaagccaataccaccaggccaccccaa 909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 25309 - 25346
Alignment:
Q  17 aagaagctaaattagctcatccaaattgacaccagaga 54  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  25309 aagaagctaaaatagctcattcaaattgacaccagaga 25346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 130
Target Start/End: Original strand, 42555 - 42596
Alignment:
Q  89 ccagatcccaagtcaataccaccaggccaacccaaatgggtt 130  Q
    |||||| ||||||||||||||| |||||||||||| ||||||    
T  42555 ccagattccaagtcaataccactaggccaacccaactgggtt 42596  T

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Target: scaffold0417 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 10260 - 10216
Alignment:
Q  89 ccagatcccaagtcaataccaccaggccaacccaaatgggtttgg 133  Q
    |||||||||||| ||||| || ||||||||||||| |||||||||    
T  10260 ccagatcccaagccaatatcatcaggccaacccaagtgggtttgg 10216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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